Wall clock time and date at job start Tue Mar 31 2020 20:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47527 * 2 1 4 4 C 1.50707 * 109.47147 * 120.00150 * 2 1 3 5 5 O 1.21275 * 119.99798 * 120.00228 * 4 2 1 6 6 N 1.34773 * 120.00093 * 299.99835 * 4 2 1 7 7 C 1.46498 * 120.00330 * 185.19554 * 6 4 2 8 8 C 1.52996 * 109.52435 * 297.40158 * 7 6 4 9 9 O 1.42904 * 109.47109 * 305.47448 * 8 7 6 10 10 C 1.53045 * 109.49571 * 57.47885 * 7 6 4 11 11 C 1.53041 * 109.52585 * 58.58125 * 10 7 6 12 12 C 1.53199 * 109.31286 * 61.37053 * 11 10 7 13 13 N 1.46923 * 108.77319 * 305.36477 * 12 11 10 14 14 C 1.36935 * 120.63252 * 233.62646 * 13 12 11 15 15 H 1.08001 * 120.00374 * 149.68273 * 14 13 12 16 16 C 1.38821 * 119.99945 * 329.68448 * 14 13 12 17 17 N 1.31617 * 119.99482 * 343.60019 * 16 14 13 18 18 Si 1.86797 * 120.00140 * 163.59619 * 16 14 13 19 19 H 1.48508 * 109.46926 * 60.00142 * 18 16 14 20 20 H 1.48497 * 109.47280 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47249 * 300.00148 * 18 16 14 22 22 C 1.46931 * 118.74148 * 53.60913 * 13 12 11 23 23 C 1.50706 * 109.47191 * 240.00196 * 2 1 3 24 24 C 1.38414 * 122.53952 * 119.73966 * 23 2 1 25 25 C 1.33390 * 114.92210 * 179.76222 * 24 23 2 26 26 S 1.75888 * 109.58964 * 0.47286 * 25 24 23 27 27 C 1.33384 * 122.53454 * 300.02485 * 23 2 1 28 28 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46944 * 300.00296 * 1 2 3 30 30 H 1.08994 * 109.47315 * 59.99659 * 1 2 3 31 31 H 0.97003 * 119.99386 * 5.19639 * 6 4 2 32 32 H 1.09007 * 109.47172 * 65.47133 * 8 7 6 33 33 H 1.08998 * 109.47441 * 185.47776 * 8 7 6 34 34 H 0.96696 * 114.00164 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46285 * 298.56884 * 10 7 6 36 36 H 1.08998 * 109.45998 * 178.59260 * 10 7 6 37 37 H 1.08994 * 109.49928 * 181.32237 * 11 10 7 38 38 H 1.09001 * 109.49958 * 301.42368 * 11 10 7 39 39 H 1.08996 * 109.58465 * 65.14927 * 12 11 10 40 40 H 1.08994 * 109.58548 * 185.43323 * 12 11 10 41 41 H 0.97006 * 119.99483 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.58313 * 66.17326 * 22 13 12 43 43 H 1.09000 * 109.58778 * 186.45670 * 22 13 12 44 44 H 1.08003 * 122.54253 * 359.97438 * 24 23 2 45 45 H 1.08000 * 125.20861 * 180.20298 * 25 24 23 46 46 H 1.07999 * 125.20738 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2501 2.4546 7 6 2.2861 -0.8704 3.6486 8 6 1.8448 -2.3331 3.7301 9 8 0.4185 -2.4040 3.6765 10 6 3.8130 -0.8013 3.5703 11 6 4.2536 0.6598 3.4555 12 6 3.7981 1.4258 4.7016 13 7 2.3495 1.2435 4.8654 14 6 1.5193 2.3258 4.9861 15 1 0.5022 2.2689 4.6273 16 6 1.9850 3.4962 5.5695 17 7 3.0872 3.4796 6.2887 18 14 1.0474 5.0945 5.3339 19 1 -0.3276 4.9463 5.8752 20 1 1.7467 6.1893 6.0534 21 1 0.9773 5.4186 3.8864 22 6 1.8084 -0.1222 4.8970 23 6 2.0323 -0.7104 -1.2305 24 6 2.8262 -0.0874 -2.1779 25 6 3.1884 -0.8596 -3.2035 26 16 2.4983 -2.4653 -3.0051 27 6 1.7410 -1.9855 -1.4919 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.0888 0.4922 2.5450 32 1 2.2679 -2.8875 2.8923 33 1 2.1951 -2.7667 4.6668 34 1 0.0674 -3.3038 3.7230 35 1 4.1573 -1.3541 2.6963 36 1 4.2430 -1.2405 4.4704 37 1 5.3397 0.7072 3.3761 38 1 3.8038 1.1069 2.5690 39 1 4.3167 1.0384 5.5785 40 1 4.0240 2.4854 4.5820 41 1 3.4124 4.2973 6.6967 42 1 2.1648 -0.6358 5.7899 43 1 0.7191 -0.0835 4.9079 44 1 3.1323 0.9447 -2.0915 45 1 3.8068 -0.5457 -4.0314 46 1 1.1327 -2.6254 -0.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672495870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:29 Heat of formation + Delta-G solvation = -30.758437 kcal Electronic energy + Delta-G solvation = -28913.758570 eV Core-core repulsion = 25123.693781 eV Total energy + Delta-G solvation = -3790.064790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31744 -38.55841 -36.93660 -36.02412 -33.83859 -33.27627 -31.91241 -30.50025 -29.76221 -28.58162 -25.43707 -25.30174 -25.04968 -23.20468 -22.17694 -21.01000 -20.05376 -18.63529 -18.56259 -17.69694 -17.01631 -16.78163 -16.63519 -15.41774 -15.01830 -14.91129 -14.71845 -14.16602 -14.02577 -13.76325 -13.42236 -13.28848 -13.02991 -12.90422 -12.70980 -12.63592 -12.37720 -12.30289 -12.03609 -11.90223 -11.63377 -11.46062 -11.32783 -11.14771 -11.04328 -10.74951 -10.68224 -10.43351 -10.17122 -10.09991 -9.79908 -9.66751 -9.51794 -8.98116 -8.72483 -8.49984 -8.41119 -8.33944 -6.68471 -5.83112 -3.28683 1.06950 1.68769 1.99949 2.70505 3.08716 3.34982 3.41354 3.41511 3.72062 4.44419 4.52744 4.75250 4.88659 5.09225 5.24279 5.28099 5.32573 5.36940 5.38309 5.55548 5.61103 5.66823 5.68909 5.77965 5.79745 5.80975 5.96758 6.04369 6.07012 6.13406 6.30556 6.38862 6.42878 6.49912 6.54858 6.65467 6.70619 6.81066 6.89271 7.15387 7.35969 7.62728 7.74758 7.86788 8.12927 8.40916 8.73179 9.16645 9.78781 10.37304 11.25019 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.003672 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.666772 B = 7622.579899 C = 8347.045779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.546 6.546 6 N -0.686 5.686 7 C 0.168 3.832 8 C 0.067 3.933 9 O -0.564 6.564 10 C -0.120 4.120 11 C -0.135 4.135 12 C 0.172 3.828 13 N -0.587 5.587 14 C -0.259 4.259 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.899 5.899 18 Si 0.901 3.099 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.148 3.852 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.219 4.219 26 S 0.076 5.924 27 C -0.170 4.170 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.405 0.595 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.369 0.631 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.030 0.970 43 H 0.066 0.934 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 -10.381 -14.572 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 H 0.121 0.879 4 C 0.307 3.693 5 O -0.425 6.425 6 N -0.336 5.336 7 C 0.080 3.920 8 C -0.012 4.012 9 O -0.368 6.368 10 C -0.158 4.158 11 C -0.175 4.175 12 C 0.046 3.954 13 N -0.309 5.309 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.542 5.542 18 Si 0.731 3.269 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.021 3.979 23 C -0.096 4.096 24 C -0.152 4.152 25 C -0.354 4.354 26 S 0.339 5.661 27 C -0.306 4.306 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.240 0.760 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.214 0.786 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.179 0.821 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.712 -11.592 -15.413 19.361 hybrid contribution -0.603 1.919 0.957 2.228 sum -2.315 -9.673 -14.455 17.546 Atomic orbital electron populations 1.21758 0.92180 1.02717 1.02828 1.20023 0.97431 1.00080 0.90301 0.87903 1.20218 0.80277 0.84382 0.84424 1.90588 1.38971 1.26193 1.86737 1.45730 1.47118 1.36363 1.04346 1.20934 0.93347 0.90387 0.87315 1.22661 0.80940 0.97620 0.99968 1.86506 1.20920 1.31988 1.97392 1.21738 0.93654 0.98521 1.01934 1.22091 0.98723 0.95051 1.01596 1.20756 0.83427 0.99703 0.91466 1.44008 1.03136 0.99618 1.84182 1.19075 0.95604 0.90729 1.33421 0.91805 1.25094 0.97963 0.99332 0.96727 1.70028 1.23869 1.26976 1.33324 0.86401 0.79328 0.83388 0.77784 1.20842 1.21695 1.20972 1.21095 0.98026 0.86994 0.91803 1.18364 1.00573 0.94015 0.96678 1.20078 0.99732 1.01306 0.94114 1.25438 1.08685 0.96679 1.04595 1.84124 1.48282 1.13629 1.20043 1.25281 1.06568 0.99017 0.99711 0.92143 0.91366 0.91642 0.75960 0.92000 0.93833 0.78629 0.91107 0.92167 0.93382 0.92824 0.96449 0.89987 0.93550 0.95270 0.91574 0.84346 0.82142 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.92 37.16 0.33 -1.20 16 2 C -0.05 -0.71 2.98 -92.92 -0.28 -0.99 16 3 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 4 C 0.52 8.28 6.39 -10.98 -0.07 8.21 16 5 O -0.55 -9.82 11.56 5.56 0.06 -9.76 16 6 N -0.69 -11.37 3.87 -47.50 -0.18 -11.56 16 7 C 0.17 2.94 0.45 -131.70 -0.06 2.88 16 8 C 0.07 1.04 5.67 37.16 0.21 1.25 16 9 O -0.56 -8.17 13.08 -35.23 -0.46 -8.63 16 10 C -0.12 -2.16 4.43 -26.69 -0.12 -2.28 16 11 C -0.14 -2.64 5.93 -26.61 -0.16 -2.80 16 12 C 0.17 3.99 5.28 -3.71 -0.02 3.97 16 13 N -0.59 -13.85 2.90 -172.32 -0.50 -14.35 16 14 C -0.26 -6.68 9.56 -15.06 -0.14 -6.83 16 15 H 0.06 1.60 7.88 -52.49 -0.41 1.19 16 16 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 17 N -0.90 -25.35 11.33 55.49 0.63 -24.72 16 18 Si 0.90 20.91 29.58 -169.99 -5.03 15.89 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.15 3.01 5.06 -3.71 -0.02 2.99 16 23 C -0.08 -1.09 4.28 -106.25 -0.46 -1.55 16 24 C -0.12 -1.44 9.92 -41.21 -0.41 -1.85 16 25 C -0.22 -2.36 11.23 29.04 0.33 -2.03 16 26 S 0.08 0.84 23.34 -107.50 -2.51 -1.67 16 27 C -0.17 -2.17 9.26 29.04 0.27 -1.90 16 28 H 0.06 0.68 7.74 -51.93 -0.40 0.27 16 29 H 0.07 0.77 7.46 -51.93 -0.39 0.38 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 6.87 7.76 -40.82 -0.32 6.55 16 32 H 0.06 1.01 6.36 -51.93 -0.33 0.68 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.37 3.63 9.12 45.56 0.42 4.05 16 35 H 0.07 1.31 6.21 -51.93 -0.32 0.99 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.07 7.46 -51.93 -0.39 0.69 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 2.13 6.22 -51.93 -0.32 1.81 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.38 7.79 -51.93 -0.40 0.97 16 44 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.16 2.01 7.94 -52.49 -0.42 1.59 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -30.22 374.52 -9.25 -39.47 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.22 Total: 11.67 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.68 Total: -1.99 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.05 Total: -50.63 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.40 Total: -18.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.22 -9.25 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672495870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.708 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds