Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46744 * 2 1 4 4 C 1.50699 * 109.47059 * 119.99769 * 2 1 3 5 5 O 1.21280 * 119.99542 * 119.99953 * 4 2 1 6 6 N 1.34775 * 120.00093 * 300.00354 * 4 2 1 7 7 C 1.46494 * 119.99916 * 174.84782 * 6 4 2 8 8 C 1.52998 * 109.50076 * 63.45233 * 7 6 4 9 9 O 1.42894 * 109.47255 * 54.10634 * 8 7 6 10 10 C 1.53044 * 109.49956 * 303.38530 * 7 6 4 11 11 C 1.53036 * 109.53607 * 301.41807 * 10 7 6 12 12 C 1.53196 * 109.31347 * 298.63159 * 11 10 7 13 13 N 1.46925 * 108.77515 * 54.63626 * 12 11 10 14 14 C 1.36931 * 120.63073 * 126.41546 * 13 12 11 15 15 H 1.07995 * 120.00132 * 323.78607 * 14 13 12 16 16 C 1.38810 * 120.00032 * 143.78468 * 14 13 12 17 17 N 1.31618 * 120.00118 * 2.36503 * 16 14 13 18 18 Si 1.86803 * 120.00175 * 182.36470 * 16 14 13 19 19 H 1.48500 * 109.46835 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46869 * 120.00011 * 18 16 14 21 21 H 1.48498 * 109.47170 * 240.00123 * 18 16 14 22 22 C 1.46997 * 118.75176 * 306.38990 * 13 12 11 23 23 C 1.50695 * 109.46836 * 240.00120 * 2 1 3 24 24 C 1.38420 * 122.54301 * 120.00275 * 23 2 1 25 25 C 1.33384 * 114.92743 * 180.02562 * 24 23 2 26 26 S 1.75890 * 109.59110 * 0.02562 * 25 24 23 27 27 C 1.33392 * 122.54044 * 300.02112 * 23 2 1 28 28 H 1.09001 * 109.47124 * 59.99919 * 1 2 3 29 29 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46972 * 300.00444 * 1 2 3 31 31 H 0.96996 * 119.99912 * 354.83982 * 6 4 2 32 32 H 1.09004 * 109.47108 * 174.10768 * 8 7 6 33 33 H 1.09000 * 109.47019 * 294.10573 * 8 7 6 34 34 H 0.96707 * 113.99987 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.45472 * 61.43468 * 10 7 6 36 36 H 1.08992 * 109.46350 * 181.39567 * 10 7 6 37 37 H 1.08998 * 109.50191 * 58.58323 * 11 10 7 38 38 H 1.09000 * 109.49892 * 178.64619 * 11 10 7 39 39 H 1.09003 * 109.58609 * 174.42679 * 12 11 10 40 40 H 1.09000 * 109.58281 * 294.70415 * 12 11 10 41 41 H 0.96995 * 120.00374 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58756 * 293.83108 * 22 13 12 43 43 H 1.09002 * 109.62613 * 173.37879 * 22 13 12 44 44 H 1.08001 * 122.53708 * 0.04069 * 24 23 2 45 45 H 1.07994 * 125.20957 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20307 * 359.94629 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.0993 -1.0025 3.6485 8 6 3.6257 -1.0543 3.7406 9 8 4.1515 0.2733 3.6860 10 6 1.5443 -2.4260 3.5606 11 6 0.0200 -2.3740 3.4346 12 6 -0.5686 -1.7016 4.6789 13 7 0.0675 -0.3887 4.8526 14 6 -0.6921 0.7442 4.9728 15 1 -1.6068 0.8435 4.4073 16 6 -0.2865 1.7651 5.8214 17 7 0.8515 1.6644 6.4750 18 14 -1.3557 3.2818 6.0358 19 1 -2.5738 3.1513 5.1965 20 1 -1.7481 3.4131 7.4619 21 1 -0.5947 4.4869 5.6188 22 6 1.5350 -0.3141 4.8954 23 6 2.0323 -0.7104 -1.2305 24 6 2.8306 -0.0890 -2.1753 25 6 3.1874 -0.8594 -3.2040 26 16 2.4968 -2.4649 -3.0060 27 6 1.7410 -1.9856 -1.4919 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2125 0.5798 2.5449 32 1 3.9173 -1.5222 4.6809 33 1 4.0203 -1.6360 2.9076 34 1 5.1161 0.3168 3.7397 35 1 1.9640 -2.9260 2.6877 36 1 1.8157 -2.9778 4.4605 37 1 -0.2526 -1.8012 2.5483 38 1 -0.3726 -3.3872 3.3479 39 1 -1.6434 -1.5729 4.5508 40 1 -0.3768 -2.3217 5.5546 41 1 1.1348 2.3776 7.0682 42 1 1.9006 -0.8198 5.7891 43 1 1.8483 0.7298 4.9098 44 1 3.1412 0.9415 -2.0861 45 1 3.8058 -0.5455 -4.0319 46 1 1.1338 -2.6258 -0.8691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672495871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = -31.076602 kcal Electronic energy + Delta-G solvation = -29141.014907 eV Core-core repulsion = 25350.936321 eV Total energy + Delta-G solvation = -3790.078586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20817 -38.46459 -36.85357 -35.83643 -33.66809 -33.19244 -32.27236 -30.14330 -29.67182 -28.52012 -25.43600 -25.23471 -25.00903 -23.12736 -22.16940 -20.88618 -19.93379 -18.57452 -18.51350 -17.64002 -16.97228 -16.71682 -16.52405 -15.34017 -15.07161 -14.75931 -14.50808 -14.10867 -13.95272 -13.70131 -13.36110 -13.18839 -12.97734 -12.89408 -12.65307 -12.41692 -12.30993 -12.29556 -12.04976 -11.81698 -11.54033 -11.39050 -11.24911 -11.12353 -10.90221 -10.79730 -10.63658 -10.47251 -10.17468 -9.95480 -9.81928 -9.57188 -9.49879 -8.84460 -8.69234 -8.52335 -8.31388 -8.25210 -6.58370 -5.83313 -3.37971 1.10341 1.72048 2.03374 2.74821 3.18117 3.32967 3.41294 3.42355 3.87455 4.43088 4.73435 4.81194 4.96526 5.16585 5.31485 5.32982 5.36387 5.44129 5.45638 5.65005 5.67085 5.74701 5.80451 5.87062 5.88607 5.90223 6.01133 6.10573 6.15749 6.25326 6.36148 6.42883 6.45210 6.52471 6.54593 6.58759 6.71036 6.84289 7.00785 7.12631 7.39900 7.73659 7.76776 8.11775 8.29280 8.48436 8.86096 9.18841 9.77609 10.38988 11.22579 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003688 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.182504 B = 7590.227670 C = 7949.453252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 H 0.100 0.900 4 C 0.518 3.482 5 O -0.550 6.550 6 N -0.682 5.682 7 C 0.157 3.843 8 C 0.071 3.929 9 O -0.559 6.559 10 C -0.121 4.121 11 C -0.128 4.128 12 C 0.143 3.857 13 N -0.590 5.590 14 C -0.260 4.260 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.898 5.898 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.173 3.827 23 C -0.085 4.085 24 C -0.121 4.121 25 C -0.221 4.221 26 S 0.076 5.924 27 C -0.169 4.169 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.407 0.593 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.366 0.634 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.016 0.984 41 H 0.255 0.745 42 H 0.027 0.973 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.160 0.840 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -5.146 -14.614 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 H 0.118 0.882 4 C 0.303 3.697 5 O -0.429 6.429 6 N -0.331 5.331 7 C 0.069 3.931 8 C -0.009 4.009 9 O -0.362 6.362 10 C -0.159 4.159 11 C -0.167 4.167 12 C 0.017 3.983 13 N -0.313 5.313 14 C -0.389 4.389 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.541 5.541 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.047 3.953 23 C -0.097 4.097 24 C -0.152 4.152 25 C -0.356 4.356 26 S 0.339 5.661 27 C -0.304 4.304 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.242 0.758 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.211 0.789 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.178 0.822 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.762 -6.922 -15.438 17.332 hybrid contribution -0.041 2.278 1.214 2.582 sum 3.722 -4.644 -14.223 15.418 Atomic orbital electron populations 1.21784 0.92042 1.02782 1.03012 1.20004 0.97474 0.99902 0.90380 0.88237 1.20239 0.80183 0.84713 0.84525 1.90581 1.38236 1.27289 1.86784 1.45775 1.56392 1.26694 1.04251 1.21236 0.90990 0.92454 0.88469 1.22584 0.94925 0.83972 0.99400 1.86566 1.24623 1.27790 1.97232 1.21727 0.96497 0.95803 1.01895 1.21925 0.95104 0.99122 1.00557 1.20972 0.96035 0.87762 0.93532 1.43974 1.00908 1.01339 1.85075 1.19142 1.05604 0.94672 1.19501 0.91842 1.25348 0.97229 0.99773 0.96287 1.69895 1.20676 1.33287 1.30243 0.86256 0.80236 0.82767 0.77719 1.20234 1.21562 1.21625 1.21165 0.83147 1.02006 0.88982 1.18380 1.00479 0.94040 0.96752 1.20061 0.99775 1.01236 0.94137 1.25424 1.08831 0.96816 1.04523 1.84126 1.48404 1.13537 1.20034 1.25303 1.06461 0.99019 0.99628 0.91777 0.92236 0.90888 0.75778 0.94094 0.92617 0.78918 0.91078 0.92284 0.92440 0.93405 0.92966 0.96620 0.93455 0.95505 0.87143 0.84458 0.82205 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.93 37.16 0.33 -1.38 16 2 C -0.05 -0.73 2.97 -92.92 -0.28 -1.01 16 3 H 0.10 1.25 8.03 -51.93 -0.42 0.83 16 4 C 0.52 8.65 6.34 -10.99 -0.07 8.58 16 5 O -0.55 -10.31 11.56 5.56 0.06 -10.24 16 6 N -0.68 -12.19 3.80 -47.50 -0.18 -12.37 16 7 C 0.16 2.98 0.45 -131.70 -0.06 2.92 16 8 C 0.07 1.26 5.68 37.16 0.21 1.47 16 9 O -0.56 -9.93 13.09 -35.23 -0.46 -10.39 16 10 C -0.12 -2.17 4.42 -26.69 -0.12 -2.29 16 11 C -0.13 -2.25 5.93 -26.61 -0.16 -2.41 16 12 C 0.14 2.92 6.52 -3.71 -0.02 2.89 16 13 N -0.59 -13.81 2.91 -172.26 -0.50 -14.31 16 14 C -0.26 -6.62 9.54 -15.06 -0.14 -6.77 16 15 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 16 C 0.01 0.35 5.29 -17.43 -0.09 0.26 16 17 N -0.90 -24.81 10.75 55.49 0.60 -24.22 16 18 Si 0.90 20.72 29.55 -169.99 -5.02 15.70 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.17 3.95 3.80 -3.67 -0.01 3.94 16 23 C -0.08 -1.13 4.28 -106.25 -0.46 -1.59 16 24 C -0.12 -1.45 9.92 -41.21 -0.41 -1.86 16 25 C -0.22 -2.41 11.23 29.04 0.33 -2.08 16 26 S 0.08 0.87 23.34 -107.50 -2.51 -1.64 16 27 C -0.17 -2.25 9.26 29.04 0.27 -1.98 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.75 7.74 -51.93 -0.40 0.34 16 30 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 31 H 0.41 7.64 8.06 -40.82 -0.33 7.31 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 34 H 0.37 4.73 9.12 45.56 0.42 5.15 16 35 H 0.07 1.31 6.15 -51.93 -0.32 0.99 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.03 7.42 -51.93 -0.39 0.65 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.11 2.88 5.92 -51.93 -0.31 2.58 16 44 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.16 2.16 7.94 -52.49 -0.42 1.74 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -29.69 374.42 -9.29 -38.98 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.24 Total: 14.17 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.68 Total: -1.32 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.08 Total: -50.90 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.40 Total: -20.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.69 -9.29 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672495871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.907 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds