Wall clock time and date at job start Tue Mar 31 2020 20:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46744 * 2 1 4 4 C 1.50699 * 109.47059 * 119.99769 * 2 1 3 5 5 O 1.21280 * 119.99542 * 119.99953 * 4 2 1 6 6 N 1.34775 * 120.00093 * 300.00354 * 4 2 1 7 7 C 1.46494 * 119.99916 * 174.84782 * 6 4 2 8 8 C 1.52998 * 109.50076 * 63.45233 * 7 6 4 9 9 O 1.42894 * 109.47255 * 54.10634 * 8 7 6 10 10 C 1.53044 * 109.49956 * 303.38530 * 7 6 4 11 11 C 1.53036 * 109.53607 * 301.41807 * 10 7 6 12 12 C 1.53196 * 109.31347 * 298.63159 * 11 10 7 13 13 N 1.46925 * 108.77515 * 54.63626 * 12 11 10 14 14 C 1.36931 * 120.63073 * 126.41546 * 13 12 11 15 15 H 1.07995 * 120.00132 * 323.78607 * 14 13 12 16 16 C 1.38810 * 120.00032 * 143.78468 * 14 13 12 17 17 N 1.31618 * 120.00118 * 2.36503 * 16 14 13 18 18 Si 1.86803 * 120.00175 * 182.36470 * 16 14 13 19 19 H 1.48500 * 109.46835 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46869 * 120.00011 * 18 16 14 21 21 H 1.48498 * 109.47170 * 240.00123 * 18 16 14 22 22 C 1.46997 * 118.75176 * 306.38990 * 13 12 11 23 23 C 1.50695 * 109.46836 * 240.00120 * 2 1 3 24 24 C 1.38420 * 122.54301 * 120.00275 * 23 2 1 25 25 C 1.33384 * 114.92743 * 180.02562 * 24 23 2 26 26 S 1.75890 * 109.59110 * 0.02562 * 25 24 23 27 27 C 1.33392 * 122.54044 * 300.02112 * 23 2 1 28 28 H 1.09001 * 109.47124 * 59.99919 * 1 2 3 29 29 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46972 * 300.00444 * 1 2 3 31 31 H 0.96996 * 119.99912 * 354.83982 * 6 4 2 32 32 H 1.09004 * 109.47108 * 174.10768 * 8 7 6 33 33 H 1.09000 * 109.47019 * 294.10573 * 8 7 6 34 34 H 0.96707 * 113.99987 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.45472 * 61.43468 * 10 7 6 36 36 H 1.08992 * 109.46350 * 181.39567 * 10 7 6 37 37 H 1.08998 * 109.50191 * 58.58323 * 11 10 7 38 38 H 1.09000 * 109.49892 * 178.64619 * 11 10 7 39 39 H 1.09003 * 109.58609 * 174.42679 * 12 11 10 40 40 H 1.09000 * 109.58281 * 294.70415 * 12 11 10 41 41 H 0.96995 * 120.00374 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58756 * 293.83108 * 22 13 12 43 43 H 1.09002 * 109.62613 * 173.37879 * 22 13 12 44 44 H 1.08001 * 122.53708 * 0.04069 * 24 23 2 45 45 H 1.07994 * 125.20957 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20307 * 359.94629 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.0993 -1.0025 3.6485 8 6 3.6257 -1.0543 3.7406 9 8 4.1515 0.2733 3.6860 10 6 1.5443 -2.4260 3.5606 11 6 0.0200 -2.3740 3.4346 12 6 -0.5686 -1.7016 4.6789 13 7 0.0675 -0.3887 4.8526 14 6 -0.6921 0.7442 4.9728 15 1 -1.6068 0.8435 4.4073 16 6 -0.2865 1.7651 5.8214 17 7 0.8515 1.6644 6.4750 18 14 -1.3557 3.2818 6.0358 19 1 -2.5738 3.1513 5.1965 20 1 -1.7481 3.4131 7.4619 21 1 -0.5947 4.4869 5.6188 22 6 1.5350 -0.3141 4.8954 23 6 2.0323 -0.7104 -1.2305 24 6 2.8306 -0.0890 -2.1753 25 6 3.1874 -0.8594 -3.2040 26 16 2.4968 -2.4649 -3.0060 27 6 1.7410 -1.9856 -1.4919 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2125 0.5798 2.5449 32 1 3.9173 -1.5222 4.6809 33 1 4.0203 -1.6360 2.9076 34 1 5.1161 0.3168 3.7397 35 1 1.9640 -2.9260 2.6877 36 1 1.8157 -2.9778 4.4605 37 1 -0.2526 -1.8012 2.5483 38 1 -0.3726 -3.3872 3.3479 39 1 -1.6434 -1.5729 4.5508 40 1 -0.3768 -2.3217 5.5546 41 1 1.1348 2.3776 7.0682 42 1 1.9006 -0.8198 5.7891 43 1 1.8483 0.7298 4.9098 44 1 3.1412 0.9415 -2.0861 45 1 3.8058 -0.5455 -4.0319 46 1 1.1338 -2.6258 -0.8691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672495871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:31 Heat of formation + Delta-G solvation = -50.061396 kcal Electronic energy + Delta-G solvation = -29141.838150 eV Core-core repulsion = 25350.936321 eV Total energy + Delta-G solvation = -3790.901829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56912 -39.70278 -38.17252 -37.32654 -35.31478 -34.49483 -33.73382 -31.86766 -31.18236 -29.51346 -27.30521 -26.59307 -26.23900 -24.25856 -23.87122 -22.34210 -21.32984 -20.03157 -19.55071 -18.77012 -18.54972 -18.16184 -17.91706 -16.87642 -16.46722 -16.08875 -15.93160 -15.76107 -15.28261 -15.08283 -14.77703 -14.61227 -14.37755 -14.07199 -14.02592 -13.81977 -13.62020 -13.50904 -13.20338 -13.09106 -12.97618 -12.78940 -12.75453 -12.57972 -12.46743 -12.28111 -12.20271 -11.90133 -11.65254 -11.56456 -11.44771 -11.17863 -10.97652 -10.51129 -10.24943 -9.70506 -9.59954 -9.23317 -8.50206 -7.81552 -5.38647 0.18696 0.82787 1.13376 1.49370 1.52648 1.61173 1.77946 1.86692 2.52419 2.54654 3.34639 3.38319 3.69948 3.80245 3.86198 4.11203 4.15054 4.24074 4.27125 4.35159 4.39830 4.40129 4.50637 4.55864 4.65997 4.77392 4.84025 4.87944 4.89939 4.90715 4.97811 5.01861 5.15241 5.19410 5.23122 5.25943 5.37128 5.51785 5.53082 5.64042 5.69885 5.84496 5.85878 6.50502 6.87578 6.94108 7.21760 7.48565 7.87505 8.44661 9.22168 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003688 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.182504 B = 7590.227670 C = 7949.453252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 H 0.111 0.889 4 C 0.520 3.480 5 O -0.569 6.569 6 N -0.684 5.684 7 C 0.161 3.839 8 C 0.077 3.923 9 O -0.577 6.577 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.141 3.859 13 N -0.603 5.603 14 C -0.260 4.260 15 H 0.067 0.933 16 C -0.037 4.037 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.292 1.292 22 C 0.191 3.809 23 C -0.093 4.093 24 C -0.139 4.139 25 C -0.213 4.213 26 S 0.092 5.908 27 C -0.191 4.191 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.401 0.599 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.387 0.613 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.249 0.751 42 H -0.002 1.002 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.188 0.812 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -5.258 -16.709 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 H 0.129 0.871 4 C 0.306 3.694 5 O -0.450 6.450 6 N -0.332 5.332 7 C 0.072 3.928 8 C -0.002 4.002 9 O -0.383 6.383 10 C -0.153 4.153 11 C -0.155 4.155 12 C 0.016 3.984 13 N -0.326 5.326 14 C -0.390 4.390 15 H 0.085 0.915 16 C -0.233 4.233 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.224 1.224 21 H -0.219 1.219 22 C 0.064 3.936 23 C -0.105 4.105 24 C -0.169 4.169 25 C -0.348 4.348 26 S 0.356 5.644 27 C -0.327 4.327 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.095 0.905 44 H 0.171 0.829 45 H 0.205 0.795 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.516 -7.056 -17.561 19.250 hybrid contribution 0.070 2.261 1.835 2.913 sum 3.586 -4.795 -15.726 16.827 Atomic orbital electron populations 1.21728 0.91089 1.02641 1.03439 1.19984 0.98180 1.00051 0.88970 0.87086 1.20715 0.79463 0.84424 0.84756 1.90565 1.39100 1.28247 1.87040 1.45739 1.56630 1.26428 1.04447 1.21014 0.91727 0.92662 0.87358 1.22478 0.94078 0.84066 0.99613 1.86519 1.26755 1.27775 1.97235 1.21677 0.96679 0.94970 1.01996 1.21798 0.94670 1.00185 0.98810 1.21073 0.96272 0.86435 0.94616 1.44153 1.01142 1.02095 1.85216 1.19408 1.05491 0.95278 1.18802 0.91492 1.25987 0.98228 1.02532 0.96540 1.70078 1.22146 1.33902 1.31201 0.85291 0.79055 0.79552 0.77042 1.18891 1.22417 1.21943 1.20749 0.83100 0.99942 0.89785 1.18488 1.00994 0.94202 0.96866 1.20248 1.00109 1.02292 0.94251 1.25817 1.08061 0.96134 1.04795 1.84057 1.47847 1.13897 1.18635 1.25367 1.07249 0.99258 1.00807 0.89862 0.92658 0.91851 0.76398 0.93546 0.92618 0.76549 0.90960 0.92023 0.92651 0.90807 0.92600 0.97041 0.94189 0.98354 0.90466 0.82870 0.79465 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.93 71.98 0.64 -2.42 16 2 C -0.05 -1.25 2.97 -12.29 -0.04 -1.28 16 3 H 0.11 2.61 8.03 -2.39 -0.02 2.59 16 4 C 0.52 16.93 6.34 87.66 0.56 17.48 16 5 O -0.57 -20.85 11.56 -3.03 -0.04 -20.88 16 6 N -0.68 -24.29 3.80 -422.57 -1.60 -25.89 16 7 C 0.16 6.12 0.45 3.68 0.00 6.12 16 8 C 0.08 2.73 5.68 71.98 0.41 3.14 16 9 O -0.58 -20.44 13.09 -148.98 -1.95 -22.39 16 10 C -0.11 -4.03 4.42 30.62 0.14 -3.89 16 11 C -0.12 -3.92 5.93 30.67 0.18 -3.74 16 12 C 0.14 5.67 6.52 86.36 0.56 6.23 16 13 N -0.60 -28.44 2.91 -698.91 -2.03 -30.47 16 14 C -0.26 -13.28 9.54 84.03 0.80 -12.48 16 15 H 0.07 3.34 7.83 -2.91 -0.02 3.31 16 16 C -0.04 -1.93 5.29 84.86 0.45 -1.48 16 17 N -0.93 -52.64 10.75 21.65 0.23 -52.40 16 18 Si 0.96 42.93 29.55 68.60 2.03 44.96 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 C 0.19 8.89 3.80 86.35 0.33 9.22 16 23 C -0.09 -2.35 4.28 -20.92 -0.09 -2.44 16 24 C -0.14 -3.00 9.92 21.21 0.21 -2.79 16 25 C -0.21 -4.05 11.23 66.72 0.75 -3.30 16 26 S 0.09 1.93 23.34 -56.49 -1.32 0.61 16 27 C -0.19 -4.87 9.26 66.72 0.62 -4.26 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.32 7.74 -2.39 -0.02 1.31 16 30 H 0.06 1.60 7.69 -2.38 -0.02 1.58 16 31 H 0.40 15.14 8.06 -92.71 -0.75 14.39 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.99 6.43 -2.39 -0.02 1.98 16 34 H 0.39 9.77 9.12 -74.05 -0.68 9.09 16 35 H 0.07 2.57 6.15 -2.39 -0.01 2.56 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.91 7.42 -2.39 -0.02 1.89 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 42 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.08 4.17 5.92 -2.39 -0.01 4.15 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.15 4.02 7.94 -2.91 -0.02 3.99 16 Total: -1.00 -63.55 374.42 0.42 -63.13 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.42 Total: 39.22 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.52 Total: 4.12 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.41 Total: -108.77 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.98 Total: -43.27 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Total: -63.55 0.42 -63.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672495871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.068 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds