Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47346 * 2 1 4 4 C 1.53001 * 109.47204 * 120.00389 * 2 1 3 5 5 C 1.52999 * 109.47090 * 185.00196 * 4 2 1 6 6 N 1.46500 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00201 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.47995 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.39903 * 120.94601 * 0.23534 * 9 7 6 11 11 C 1.38041 * 119.03426 * 180.27832 * 10 9 7 12 12 N 1.31859 * 120.98258 * 359.72512 * 11 10 9 13 13 C 1.31716 * 122.09710 * 0.02562 * 12 11 10 14 14 C 1.38538 * 120.84601 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.53935 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47230 * 240.00276 * 2 1 3 17 17 C 1.46902 * 111.00106 * 85.00042 * 16 2 1 18 18 C 1.50702 * 109.47043 * 180.02562 * 17 16 2 19 19 O 1.21287 * 120.00069 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99576 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99676 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00291 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00108 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00395 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46737 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47061 * 119.99829 * 25 23 21 28 28 H 1.48493 * 109.47123 * 240.00526 * 25 23 21 29 29 H 1.08998 * 109.47144 * 299.99851 * 1 2 3 30 30 H 1.09003 * 109.47179 * 59.99875 * 1 2 3 31 31 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47038 * 64.99820 * 4 2 1 33 33 H 1.09005 * 109.46976 * 305.00051 * 4 2 1 34 34 H 1.08994 * 109.47487 * 59.99900 * 5 4 2 35 35 H 1.08999 * 109.46833 * 299.99422 * 5 4 2 36 36 H 0.97008 * 119.99993 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.48201 * 0.02562 * 10 9 7 38 38 H 1.08005 * 119.50718 * 179.75268 * 11 10 9 39 39 H 1.07998 * 119.58275 * 180.02562 * 13 12 11 40 40 H 1.00900 * 111.00269 * 208.95310 * 16 2 1 41 41 H 1.08998 * 109.47166 * 300.00420 * 17 16 2 42 42 H 1.09002 * 109.47014 * 60.00188 * 17 16 2 43 43 H 0.96996 * 120.00022 * 0.02562 * 20 18 17 44 44 H 0.97008 * 119.99617 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3739 -1.3387 2.7759 8 8 6.1599 -0.7984 2.0228 9 6 5.8672 -2.0364 3.9843 10 6 4.9804 -2.6701 4.8614 11 6 5.4829 -3.3043 5.9799 12 7 6.7785 -3.3234 6.2247 13 6 7.6505 -2.7448 5.4249 14 6 7.2352 -2.0844 4.2801 15 9 8.1351 -1.4927 3.4643 16 7 2.0196 -0.6924 -1.1994 17 6 2.0824 0.2227 -2.3469 18 6 2.5873 -0.5217 -3.5560 19 8 2.8677 -1.6986 -3.4703 20 7 2.7273 0.1205 -4.7327 21 6 3.1871 -0.5566 -5.8326 22 1 3.4376 -1.6044 -5.7561 23 6 3.3309 0.1052 -7.0459 24 7 3.0266 1.3803 -7.1389 25 14 3.9567 -0.8174 -8.5448 26 1 4.2267 -2.2310 -8.1787 27 1 2.9319 -0.7706 -9.6184 28 1 5.2097 -0.1840 -9.0284 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -1.7715 1.2055 33 1 1.6053 -0.2619 2.1370 34 1 3.8531 0.4369 1.3574 35 1 3.9994 -1.0728 0.4259 36 1 3.4256 -1.7345 3.1114 37 1 3.9178 -2.6598 4.6685 38 1 4.8049 -3.7925 6.6643 39 1 8.7028 -2.7858 5.6645 40 1 2.9173 -1.1204 -1.0288 41 1 1.0871 0.6165 -2.5525 42 1 2.7589 1.0463 -2.1181 43 1 2.5034 1.0617 -4.8012 44 1 3.1273 1.8424 -7.9858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674177157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -79.891507 kcal Electronic energy + Delta-G solvation = -27845.286536 eV Core-core repulsion = 23519.170751 eV Total energy + Delta-G solvation = -4326.115784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.34369 -40.95604 -39.59228 -38.48978 -37.22741 -35.08082 -33.90715 -33.35312 -31.57980 -31.45207 -31.06597 -29.14525 -26.47021 -25.64198 -24.29988 -23.92444 -23.04356 -21.38448 -20.42410 -19.28194 -18.76827 -17.89043 -17.85052 -17.71907 -16.50069 -16.44449 -16.09556 -15.92892 -15.75227 -15.23973 -14.99482 -14.95667 -14.48970 -14.28717 -14.03540 -13.89253 -13.86896 -13.67377 -13.57144 -13.13976 -12.70049 -12.53309 -12.21917 -11.89652 -11.75266 -11.61389 -11.36689 -11.31163 -11.08342 -10.88956 -10.71325 -10.53917 -10.32668 -10.20611 -10.08206 -9.59628 -9.50302 -9.45962 -8.44275 -8.08730 -7.94252 -6.40019 -3.80627 -0.02090 0.28448 2.38698 2.53846 3.12392 3.18005 3.28391 3.35911 3.37913 3.80075 3.91989 3.92756 4.02642 4.08459 4.14924 4.31134 4.49953 4.68885 4.77753 4.84945 4.98138 5.09445 5.11770 5.14810 5.26397 5.32634 5.33526 5.48324 5.64952 5.73627 5.78021 5.83643 5.90333 5.97702 5.99351 6.01843 6.24009 6.33577 6.97253 7.13378 7.21452 7.57297 7.63577 7.71505 8.08355 8.63024 9.19823 9.56174 10.07538 10.77803 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.002004 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.312140 B =13966.038871 C =15387.527275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.046 0.954 4 C -0.132 4.132 5 C 0.112 3.888 6 N -0.717 5.717 7 C 0.553 3.447 8 O -0.509 6.509 9 C -0.125 4.125 10 C -0.112 4.112 11 C 0.083 3.917 12 N -0.441 5.441 13 C 0.072 3.928 14 C 0.107 3.893 15 F -0.103 7.103 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.349 0.651 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -3.366 28.529 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.171 4.171 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.338 3.662 8 O -0.384 6.384 9 C -0.137 4.137 10 C -0.133 4.133 11 C -0.073 4.073 12 N -0.150 5.150 13 C -0.087 4.087 14 C 0.084 3.916 15 F -0.081 7.081 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.167 0.833 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.170 0.830 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.021 -4.277 28.371 28.691 hybrid contribution 0.408 1.135 -1.311 1.781 sum 0.429 -3.142 27.060 27.245 Atomic orbital electron populations 1.21783 0.94159 1.02545 1.01210 1.21454 0.96339 0.95826 0.88853 0.93655 1.21992 0.93296 1.03007 0.98770 1.21582 0.94576 0.97662 0.87312 1.45798 1.06741 1.57082 1.27374 1.17910 0.82918 0.80652 0.84742 1.90909 1.55042 1.44229 1.48200 1.20636 0.93130 1.02085 0.97852 1.22345 1.00897 0.95892 0.94139 1.22845 0.91811 0.96867 0.95760 1.67604 1.03431 1.14867 1.29079 1.23046 1.01306 0.94834 0.89520 1.18944 0.86314 0.95461 0.90832 1.91651 1.65394 1.80446 1.70610 1.60209 1.34920 1.32185 1.02799 1.21729 1.01310 0.93935 0.91326 1.19813 0.84921 0.88207 0.84447 1.90521 1.55298 1.16164 1.84758 1.41869 1.57776 1.12431 1.07991 1.19753 1.39760 0.96480 0.86755 0.87878 1.25269 0.97705 0.95800 0.99263 1.69626 1.48780 1.08864 1.27059 0.85797 0.78217 0.79638 0.80679 1.19221 1.20755 1.20765 0.92861 0.92330 0.91819 0.89893 0.90505 0.90989 0.90447 0.76450 0.83277 0.81128 0.80671 0.82976 0.89545 0.93807 0.77469 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.15 0.35 -1.06 16 2 C 0.09 0.95 2.65 -67.72 -0.18 0.77 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 4 C -0.13 -1.10 4.92 -26.73 -0.13 -1.23 16 5 C 0.11 1.13 5.50 -4.04 -0.02 1.10 16 6 N -0.72 -6.08 5.51 -61.20 -0.34 -6.42 16 7 C 0.55 6.36 7.79 -12.26 -0.10 6.27 16 8 O -0.51 -8.28 15.48 5.34 0.08 -8.20 16 9 C -0.13 -1.12 5.91 -104.60 -0.62 -1.74 16 10 C -0.11 -0.58 9.61 -39.03 -0.38 -0.96 16 11 C 0.08 0.43 11.17 -17.61 -0.20 0.23 16 12 N -0.44 -3.28 10.33 -13.24 -0.14 -3.42 16 13 C 0.07 0.54 11.17 -17.49 -0.20 0.35 16 14 C 0.11 1.04 7.33 -38.79 -0.28 0.76 16 15 F -0.10 -1.27 15.72 2.25 0.04 -1.23 16 16 N -0.67 -10.41 5.93 -107.99 -0.64 -11.05 16 17 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 18 C 0.44 10.57 7.82 -10.98 -0.09 10.49 16 19 O -0.58 -16.09 15.78 5.55 0.09 -16.01 16 20 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.99 6.43 -51.93 -0.33 0.66 16 36 H 0.40 1.91 6.61 -40.82 -0.27 1.64 16 37 H 0.15 0.26 6.54 -52.49 -0.34 -0.09 16 38 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 39 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.35 5.77 6.17 -39.29 -0.24 5.52 16 41 H 0.09 1.41 7.44 -51.93 -0.39 1.02 16 42 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 43 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -36.36 379.09 -7.24 -43.60 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.58 Total: 11.66 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.11 Total: 7.70 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.45 Total: -59.63 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.21 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.36 -7.24 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674177157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.293 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds