Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47346 * 2 1 4 4 C 1.53001 * 109.47204 * 120.00389 * 2 1 3 5 5 C 1.52999 * 109.47090 * 185.00196 * 4 2 1 6 6 N 1.46500 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00201 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.47995 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.39903 * 120.94601 * 0.23534 * 9 7 6 11 11 C 1.38041 * 119.03426 * 180.27832 * 10 9 7 12 12 N 1.31859 * 120.98258 * 359.72512 * 11 10 9 13 13 C 1.31716 * 122.09710 * 0.02562 * 12 11 10 14 14 C 1.38538 * 120.84601 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.53935 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47230 * 240.00276 * 2 1 3 17 17 C 1.46902 * 111.00106 * 85.00042 * 16 2 1 18 18 C 1.50702 * 109.47043 * 180.02562 * 17 16 2 19 19 O 1.21287 * 120.00069 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99576 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99676 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00291 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00108 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00395 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46737 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47061 * 119.99829 * 25 23 21 28 28 H 1.48493 * 109.47123 * 240.00526 * 25 23 21 29 29 H 1.08998 * 109.47144 * 299.99851 * 1 2 3 30 30 H 1.09003 * 109.47179 * 59.99875 * 1 2 3 31 31 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47038 * 64.99820 * 4 2 1 33 33 H 1.09005 * 109.46976 * 305.00051 * 4 2 1 34 34 H 1.08994 * 109.47487 * 59.99900 * 5 4 2 35 35 H 1.08999 * 109.46833 * 299.99422 * 5 4 2 36 36 H 0.97008 * 119.99993 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.48201 * 0.02562 * 10 9 7 38 38 H 1.08005 * 119.50718 * 179.75268 * 11 10 9 39 39 H 1.07998 * 119.58275 * 180.02562 * 13 12 11 40 40 H 1.00900 * 111.00269 * 208.95310 * 16 2 1 41 41 H 1.08998 * 109.47166 * 300.00420 * 17 16 2 42 42 H 1.09002 * 109.47014 * 60.00188 * 17 16 2 43 43 H 0.96996 * 120.00022 * 0.02562 * 20 18 17 44 44 H 0.97008 * 119.99617 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3739 -1.3387 2.7759 8 8 6.1599 -0.7984 2.0228 9 6 5.8672 -2.0364 3.9843 10 6 4.9804 -2.6701 4.8614 11 6 5.4829 -3.3043 5.9799 12 7 6.7785 -3.3234 6.2247 13 6 7.6505 -2.7448 5.4249 14 6 7.2352 -2.0844 4.2801 15 9 8.1351 -1.4927 3.4643 16 7 2.0196 -0.6924 -1.1994 17 6 2.0824 0.2227 -2.3469 18 6 2.5873 -0.5217 -3.5560 19 8 2.8677 -1.6986 -3.4703 20 7 2.7273 0.1205 -4.7327 21 6 3.1871 -0.5566 -5.8326 22 1 3.4376 -1.6044 -5.7561 23 6 3.3309 0.1052 -7.0459 24 7 3.0266 1.3803 -7.1389 25 14 3.9567 -0.8174 -8.5448 26 1 4.2267 -2.2310 -8.1787 27 1 2.9319 -0.7706 -9.6184 28 1 5.2097 -0.1840 -9.0284 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -1.7715 1.2055 33 1 1.6053 -0.2619 2.1370 34 1 3.8531 0.4369 1.3574 35 1 3.9994 -1.0728 0.4259 36 1 3.4256 -1.7345 3.1114 37 1 3.9178 -2.6598 4.6685 38 1 4.8049 -3.7925 6.6643 39 1 8.7028 -2.7858 5.6645 40 1 2.9173 -1.1204 -1.0288 41 1 1.0871 0.6165 -2.5525 42 1 2.7589 1.0463 -2.1181 43 1 2.5034 1.0617 -4.8012 44 1 3.1273 1.8424 -7.9858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674177157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -109.516305 kcal Electronic energy + Delta-G solvation = -27846.571163 eV Core-core repulsion = 23519.170751 eV Total energy + Delta-G solvation = -4327.400412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.11442 -41.61947 -40.40782 -40.16646 -38.42506 -36.17546 -35.84045 -34.03620 -33.32677 -32.48583 -31.99160 -29.95972 -28.09615 -26.42808 -25.74895 -24.73161 -23.81270 -22.20584 -21.31648 -21.11721 -19.95155 -19.46902 -18.50795 -18.40602 -17.85776 -17.26828 -17.15839 -16.84913 -16.76547 -16.51743 -16.30733 -16.07633 -15.61967 -15.43602 -15.27371 -15.02447 -14.73307 -14.61997 -14.43726 -14.28157 -14.08398 -13.53719 -13.36539 -13.21857 -13.16729 -12.89138 -12.59818 -12.44075 -12.29156 -12.21894 -12.12608 -11.83307 -11.54398 -11.52637 -11.16635 -10.73091 -10.38171 -10.30794 -10.12679 -10.04062 -9.33909 -8.49217 -5.98033 -0.64757 -0.21793 1.34543 1.39559 1.54090 1.61079 1.78392 2.02292 2.27244 2.55432 2.80923 2.91873 3.17759 3.27539 3.38150 3.49465 3.53225 3.63537 3.76369 3.94777 4.07669 4.26286 4.28586 4.41972 4.46890 4.48614 4.52836 4.59941 4.60842 4.68276 4.72467 4.96170 4.98527 5.03569 5.16880 5.22047 5.38627 5.41538 5.48895 5.89682 6.11714 6.27559 6.39631 6.57424 6.63736 6.95338 7.10045 7.53332 8.08715 8.68431 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.002004 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.312140 B =13966.038871 C =15387.527275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.696 5.696 7 C 0.547 3.453 8 O -0.570 6.570 9 C -0.142 4.142 10 C -0.093 4.093 11 C 0.093 3.907 12 N -0.456 5.456 13 C 0.074 3.926 14 C 0.073 3.927 15 F -0.130 7.130 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.271 1.271 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.421 0.579 37 H 0.191 0.809 38 H 0.213 0.787 39 H 0.191 0.809 40 H 0.340 0.660 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -3.667 30.773 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.155 4.155 5 C -0.010 4.010 6 N -0.349 5.349 7 C 0.334 3.666 8 O -0.449 6.449 9 C -0.153 4.153 10 C -0.113 4.113 11 C -0.063 4.063 12 N -0.165 5.165 13 C -0.084 4.084 14 C 0.050 3.950 15 F -0.108 7.108 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.196 1.196 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.208 0.792 38 H 0.229 0.771 39 H 0.208 0.792 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.157 -4.565 30.659 31.072 hybrid contribution 0.981 1.191 -1.896 2.444 sum -1.176 -3.374 28.763 28.984 Atomic orbital electron populations 1.21775 0.92987 1.02442 1.02137 1.21653 0.97086 0.96109 0.87982 0.93013 1.21910 0.91401 1.03372 0.98790 1.21458 0.95930 0.96934 0.86653 1.45596 1.06226 1.56130 1.26961 1.18389 0.83263 0.79986 0.84953 1.90875 1.56652 1.47014 1.50400 1.20630 0.93528 1.03327 0.97861 1.22765 1.02220 0.93637 0.92680 1.23586 0.91489 0.95437 0.95824 1.67700 1.04611 1.15082 1.29116 1.23236 1.02320 0.94166 0.88652 1.19341 0.86602 0.97212 0.91821 1.91574 1.66349 1.81290 1.71597 1.60264 1.34531 1.32638 1.04039 1.21581 1.02172 0.93711 0.89342 1.20944 0.83203 0.88025 0.85497 1.90484 1.56671 1.18279 1.85625 1.41946 1.58282 1.12577 1.08273 1.19695 1.42116 0.95948 0.88585 0.90445 1.26067 0.97234 0.96680 1.01425 1.69682 1.48602 1.09669 1.28113 0.84860 0.78204 0.77972 0.77226 1.19890 1.19338 1.19618 0.89707 0.93668 0.92415 0.89416 0.86696 0.91820 0.93796 0.73916 0.79212 0.77084 0.79172 0.83949 0.87643 0.92094 0.76972 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.41 71.98 0.68 -1.69 16 2 C 0.08 1.63 2.65 44.91 0.12 1.74 16 3 H 0.05 1.00 7.80 -2.38 -0.02 0.98 16 4 C -0.12 -1.60 4.92 30.59 0.15 -1.45 16 5 C 0.11 2.22 5.50 86.38 0.48 2.70 16 6 N -0.70 -10.81 5.51 -465.84 -2.57 -13.37 16 7 C 0.55 12.80 7.79 86.83 0.68 13.47 16 8 O -0.57 -19.92 15.48 -3.81 -0.06 -19.97 16 9 C -0.14 -2.47 5.91 -19.85 -0.12 -2.58 16 10 C -0.09 -0.66 9.61 22.63 0.22 -0.44 16 11 C 0.09 0.62 11.17 84.64 0.95 1.57 16 12 N -0.46 -5.85 10.33 -195.82 -2.02 -7.87 16 13 C 0.07 1.09 11.17 84.78 0.95 2.04 16 14 C 0.07 1.48 7.33 22.78 0.17 1.64 16 15 F -0.13 -3.54 15.72 44.97 0.71 -2.83 16 16 N -0.68 -20.96 5.93 -495.58 -2.94 -23.90 16 17 C 0.06 2.26 5.97 85.56 0.51 2.77 16 18 C 0.44 21.47 7.82 87.66 0.69 22.15 16 19 O -0.62 -35.76 15.78 -3.05 -0.05 -35.81 16 20 N -0.57 -30.41 5.29 -306.98 -1.62 -32.03 16 21 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 25 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 0.78 8.14 -2.38 -0.02 0.77 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.18 6.43 -2.39 -0.02 1.16 16 36 H 0.42 2.56 6.61 -92.70 -0.61 1.94 16 37 H 0.19 -0.35 6.54 -2.91 -0.02 -0.37 16 38 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.34 11.50 6.17 -89.69 -0.55 10.95 16 41 H 0.11 3.32 7.44 -2.39 -0.02 3.30 16 42 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 43 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 44 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -84.81 379.09 -0.33 -85.14 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.82 Total: 32.04 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 6.74 Total: 22.88 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -8.87 Total: -127.55 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.11 Total: -55.78 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.71 Total: -2.83 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -84.81 -0.33 -85.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674177157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.380 kcal (2) G-P(sol) polarization free energy of solvation -84.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds