Wall clock time and date at job start Tue Mar 31 2020 20:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47125 * 239.99668 * 2 1 3 5 5 N 1.46501 * 109.46876 * 185.00172 * 4 2 1 6 6 C 1.46502 * 120.00128 * 270.00226 * 5 4 2 7 7 C 1.34778 * 120.00175 * 89.99984 * 5 4 2 8 8 O 1.21577 * 119.99726 * 5.05978 * 7 5 4 9 9 C 1.47730 * 120.00376 * 185.05485 * 7 5 4 10 10 C 1.40145 * 120.52656 * 321.63969 * 9 7 5 11 11 C 1.38166 * 118.32073 * 179.97438 * 10 9 7 12 12 C 1.38742 * 119.28037 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.49097 * 180.02562 * 12 11 10 14 14 N 1.32154 * 121.02063 * 359.97438 * 12 11 10 15 15 C 1.31684 * 121.83705 * 0.02562 * 14 12 11 16 16 N 1.46903 * 109.46873 * 119.99785 * 2 1 3 17 17 C 1.46906 * 110.99963 * 275.00382 * 16 2 1 18 18 C 1.50700 * 109.47089 * 180.02562 * 17 16 2 19 19 O 1.21292 * 119.99978 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99934 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99990 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99862 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00145 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99916 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99851 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47193 * 90.00380 * 25 23 21 27 27 H 1.48502 * 109.46636 * 209.99942 * 25 23 21 28 28 H 1.48495 * 109.47109 * 329.99651 * 25 23 21 29 29 H 1.09004 * 109.47476 * 300.00355 * 1 2 3 30 30 H 1.09008 * 109.46962 * 60.00198 * 1 2 3 31 31 H 1.08994 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47070 * 65.00495 * 4 2 1 33 33 H 1.09000 * 109.46980 * 304.99744 * 4 2 1 34 34 H 1.08999 * 109.46999 * 264.90391 * 6 5 4 35 35 H 1.08998 * 109.46725 * 24.89958 * 6 5 4 36 36 H 1.08998 * 109.47036 * 144.90744 * 6 5 4 37 37 H 1.07997 * 120.84308 * 0.25225 * 10 9 7 38 38 H 1.07999 * 120.35738 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.70191 * 179.97438 * 15 14 12 40 40 H 1.00898 * 111.00292 * 151.04948 * 16 2 1 41 41 H 1.09000 * 109.46742 * 299.99707 * 17 16 2 42 42 H 1.08994 * 109.47129 * 59.99360 * 17 16 2 43 43 H 0.96996 * 119.99930 * 359.97438 * 20 18 17 44 44 H 0.96996 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.3344 0.2340 -1.7611 7 6 4.0757 -1.8987 -0.6113 8 8 3.3872 -2.8212 -0.2203 9 6 5.5434 -1.9531 -0.4519 10 6 6.3873 -1.4593 -1.4558 11 6 7.7529 -1.5326 -1.2589 12 6 8.2403 -2.0881 -0.0847 13 9 9.5749 -2.1614 0.1125 14 7 7.4194 -2.5457 0.8443 15 6 6.1113 -2.4970 0.7005 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2227 2.3470 18 6 2.5883 -0.5214 3.5559 19 8 2.8686 -1.6984 3.4701 20 7 2.7283 0.1207 4.7325 21 6 3.1881 -0.5563 5.8324 22 1 3.4377 -1.6043 5.7560 23 6 3.3330 0.1058 7.0454 24 7 3.0297 1.3811 7.1381 25 14 3.9589 -0.8169 8.5442 26 1 5.4398 -0.7238 8.6000 27 1 3.3785 -0.2172 9.7725 28 1 3.5556 -2.2430 8.4515 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 4.6176 -0.0346 -2.7788 35 1 3.7745 1.1691 -1.7746 36 1 5.2317 0.3563 -1.1546 37 1 5.9805 -1.0281 -2.3586 38 1 8.4335 -1.1622 -2.0112 39 1 5.4724 -2.8815 1.4818 40 1 2.9172 -1.1205 1.0289 41 1 2.7587 1.0462 2.1183 42 1 1.0869 0.6164 2.5525 43 1 2.5038 1.0618 4.8012 44 1 3.1305 1.8432 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676318350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:21 Heat of formation + Delta-G solvation = -51.924922 kcal Electronic energy + Delta-G solvation = -29710.663399 eV Core-core repulsion = 25385.760337 eV Total energy + Delta-G solvation = -4324.903062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.30843 -41.10339 -39.49766 -38.18885 -36.73402 -35.29061 -33.85512 -33.10028 -31.58225 -31.19241 -30.69792 -27.85882 -26.60476 -26.28967 -24.25641 -24.08959 -23.75923 -20.82654 -19.97767 -19.20325 -18.41158 -17.90510 -17.81286 -17.37341 -16.70710 -16.33824 -16.25387 -15.65869 -15.21059 -14.96314 -14.80465 -14.67800 -14.38631 -14.15245 -13.81613 -13.67364 -13.55699 -13.35986 -13.10629 -12.96440 -12.80983 -12.47808 -12.46417 -12.07311 -11.83901 -11.65308 -11.56712 -11.37136 -11.07304 -10.87906 -10.41836 -10.34787 -10.30351 -10.16724 -9.83332 -9.45565 -9.32429 -8.94460 -8.36296 -7.98135 -7.90029 -6.37028 -3.77306 0.27808 0.72317 2.43725 2.63848 3.22190 3.24001 3.30419 3.32681 3.37212 3.95766 3.97859 4.13042 4.21403 4.36281 4.37160 4.49157 4.68077 4.76328 4.90845 4.98636 5.05303 5.21114 5.23351 5.27908 5.31432 5.33368 5.36163 5.41866 5.63068 5.71377 5.72967 5.81633 6.00814 6.02568 6.12055 6.23555 6.31147 6.40539 6.97413 7.31924 7.32945 7.60285 7.74390 7.92952 8.11843 8.66898 9.23363 9.59517 10.11583 10.80914 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.003922 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.318213 B = 7137.556400 C = 9742.478838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.041 0.959 4 C 0.113 3.887 5 N -0.619 5.619 6 C 0.069 3.931 7 C 0.559 3.441 8 O -0.491 6.491 9 C -0.198 4.198 10 C -0.025 4.025 11 C -0.205 4.205 12 C 0.327 3.673 13 F -0.108 7.108 14 N -0.510 5.510 15 C 0.205 3.795 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.186 0.814 40 H 0.349 0.651 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 2.796 -23.428 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.059 0.941 4 C -0.010 4.010 5 N -0.354 5.354 6 C -0.074 4.074 7 C 0.346 3.654 8 O -0.364 6.364 9 C -0.203 4.203 10 C -0.051 4.051 11 C -0.226 4.226 12 C 0.174 3.826 13 F -0.087 7.087 14 N -0.224 5.224 15 C 0.047 3.953 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.193 1.193 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.203 0.797 40 H 0.172 0.828 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.224 0.776 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.509 0.988 -22.187 22.484 hybrid contribution 0.990 1.368 0.003 1.689 sum 4.499 2.356 -22.184 22.758 Atomic orbital electron populations 1.21743 0.93831 1.02827 1.01228 1.21949 0.96562 0.95726 0.90378 0.94132 1.21827 0.78203 1.03435 0.97500 1.47782 1.07280 1.21175 1.59139 1.22182 0.96228 0.90943 0.98059 1.18003 0.86767 0.82561 0.78085 1.90952 1.63463 1.35377 1.46615 1.20989 0.94863 1.06152 0.98334 1.21991 0.92070 0.92614 0.98432 1.21749 0.96880 1.05446 0.98568 1.18519 0.79133 0.94195 0.90790 1.91652 1.28426 1.93436 1.95226 1.67213 1.05334 1.19148 1.30659 1.22973 0.88418 0.88788 0.95076 1.60179 1.35610 1.31360 1.02332 1.21742 1.01055 0.93820 0.91718 1.19825 0.84973 0.88283 0.84425 1.90546 1.54858 1.15917 1.84651 1.41860 1.58007 1.12376 1.07971 1.19709 1.39681 0.96444 0.86786 0.87910 1.25239 0.97726 0.95770 0.99190 1.69611 1.48938 1.08879 1.27123 0.85874 0.78777 0.79598 0.80179 1.20438 1.20962 1.19350 0.92193 0.92819 0.91544 0.89636 0.88385 0.91990 0.90405 0.90692 0.82552 0.82839 0.79723 0.82767 0.94527 0.89651 0.77592 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.41 37.16 0.35 -1.17 16 2 C 0.07 0.80 2.95 -67.71 -0.20 0.60 16 3 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.11 1.14 5.20 -4.04 -0.02 1.11 16 5 N -0.62 -6.29 2.66 -182.74 -0.49 -6.77 16 6 C 0.07 0.42 8.87 59.85 0.53 0.95 16 7 C 0.56 7.53 5.56 -12.38 -0.07 7.46 16 8 O -0.49 -8.70 15.39 5.30 0.08 -8.62 16 9 C -0.20 -2.38 5.27 -104.83 -0.55 -2.93 16 10 C -0.03 -0.21 7.69 -38.89 -0.30 -0.51 16 11 C -0.21 -1.70 10.07 -39.42 -0.40 -2.10 16 12 C 0.33 3.94 8.41 -17.23 -0.14 3.80 16 13 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 14 N -0.51 -7.57 10.36 -13.22 -0.14 -7.71 16 15 C 0.21 2.99 10.80 -17.14 -0.19 2.80 16 16 N -0.66 -11.46 5.89 -107.99 -0.64 -12.10 16 17 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 18 C 0.44 10.81 7.82 -10.98 -0.09 10.72 16 19 O -0.58 -16.26 15.78 5.55 0.09 -16.17 16 20 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 21 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 22 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 25 Si 0.93 21.64 29.55 -169.99 -5.02 16.61 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.10 1.17 7.36 -51.93 -0.38 0.79 16 34 H 0.06 0.21 6.88 -51.93 -0.36 -0.14 16 35 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 36 H 0.07 0.48 5.82 -51.93 -0.30 0.18 16 37 H 0.16 0.73 5.28 -52.49 -0.28 0.45 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.19 3.00 8.05 -52.49 -0.42 2.58 16 40 H 0.35 6.52 4.33 -39.29 -0.17 6.35 16 41 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 42 H 0.09 1.47 7.43 -51.93 -0.39 1.08 16 43 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.80 372.02 -6.59 -42.39 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.44 Total: 13.61 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -1.34 Total: 13.51 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.59 Total: -65.67 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.80 -6.59 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676318350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.531 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds