Wall clock time and date at job start Tue Mar 31 2020 20:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47125 * 239.99668 * 2 1 3 5 5 N 1.46501 * 109.46876 * 185.00172 * 4 2 1 6 6 C 1.46502 * 120.00128 * 270.00226 * 5 4 2 7 7 C 1.34778 * 120.00175 * 89.99984 * 5 4 2 8 8 O 1.21577 * 119.99726 * 5.05978 * 7 5 4 9 9 C 1.47730 * 120.00376 * 185.05485 * 7 5 4 10 10 C 1.40145 * 120.52656 * 321.63969 * 9 7 5 11 11 C 1.38166 * 118.32073 * 179.97438 * 10 9 7 12 12 C 1.38742 * 119.28037 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.49097 * 180.02562 * 12 11 10 14 14 N 1.32154 * 121.02063 * 359.97438 * 12 11 10 15 15 C 1.31684 * 121.83705 * 0.02562 * 14 12 11 16 16 N 1.46903 * 109.46873 * 119.99785 * 2 1 3 17 17 C 1.46906 * 110.99963 * 275.00382 * 16 2 1 18 18 C 1.50700 * 109.47089 * 180.02562 * 17 16 2 19 19 O 1.21292 * 119.99978 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99934 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99990 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99862 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00145 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99916 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99851 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47193 * 90.00380 * 25 23 21 27 27 H 1.48502 * 109.46636 * 209.99942 * 25 23 21 28 28 H 1.48495 * 109.47109 * 329.99651 * 25 23 21 29 29 H 1.09004 * 109.47476 * 300.00355 * 1 2 3 30 30 H 1.09008 * 109.46962 * 60.00198 * 1 2 3 31 31 H 1.08994 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47070 * 65.00495 * 4 2 1 33 33 H 1.09000 * 109.46980 * 304.99744 * 4 2 1 34 34 H 1.08999 * 109.46999 * 264.90391 * 6 5 4 35 35 H 1.08998 * 109.46725 * 24.89958 * 6 5 4 36 36 H 1.08998 * 109.47036 * 144.90744 * 6 5 4 37 37 H 1.07997 * 120.84308 * 0.25225 * 10 9 7 38 38 H 1.07999 * 120.35738 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.70191 * 179.97438 * 15 14 12 40 40 H 1.00898 * 111.00292 * 151.04948 * 16 2 1 41 41 H 1.09000 * 109.46742 * 299.99707 * 17 16 2 42 42 H 1.08994 * 109.47129 * 59.99360 * 17 16 2 43 43 H 0.96996 * 119.99930 * 359.97438 * 20 18 17 44 44 H 0.96996 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.3344 0.2340 -1.7611 7 6 4.0757 -1.8987 -0.6113 8 8 3.3872 -2.8212 -0.2203 9 6 5.5434 -1.9531 -0.4519 10 6 6.3873 -1.4593 -1.4558 11 6 7.7529 -1.5326 -1.2589 12 6 8.2403 -2.0881 -0.0847 13 9 9.5749 -2.1614 0.1125 14 7 7.4194 -2.5457 0.8443 15 6 6.1113 -2.4970 0.7005 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2227 2.3470 18 6 2.5883 -0.5214 3.5559 19 8 2.8686 -1.6984 3.4701 20 7 2.7283 0.1207 4.7325 21 6 3.1881 -0.5563 5.8324 22 1 3.4377 -1.6043 5.7560 23 6 3.3330 0.1058 7.0454 24 7 3.0297 1.3811 7.1381 25 14 3.9589 -0.8169 8.5442 26 1 5.4398 -0.7238 8.6000 27 1 3.3785 -0.2172 9.7725 28 1 3.5556 -2.2430 8.4515 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 4.6176 -0.0346 -2.7788 35 1 3.7745 1.1691 -1.7746 36 1 5.2317 0.3563 -1.1546 37 1 5.9805 -1.0281 -2.3586 38 1 8.4335 -1.1622 -2.0112 39 1 5.4724 -2.8815 1.4818 40 1 2.9172 -1.1205 1.0289 41 1 2.7587 1.0462 2.1183 42 1 1.0869 0.6164 2.5525 43 1 2.5038 1.0618 4.8012 44 1 3.1305 1.8432 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676318350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:20 Heat of formation + Delta-G solvation = -80.628832 kcal Electronic energy + Delta-G solvation = -29711.908094 eV Core-core repulsion = 25385.760337 eV Total energy + Delta-G solvation = -4326.147757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.21383 -42.02112 -40.52942 -40.01726 -37.88587 -36.36727 -35.88064 -34.03484 -33.31302 -32.52052 -31.83593 -28.53471 -28.03404 -27.41351 -25.83826 -25.03684 -24.79718 -21.81415 -21.19365 -20.78927 -19.95055 -19.29567 -18.73557 -18.29188 -18.05727 -17.36036 -17.20736 -17.16125 -16.49741 -16.37388 -16.03256 -15.79565 -15.67672 -15.44690 -15.07785 -15.00042 -14.52536 -14.29645 -14.24758 -14.03792 -13.88517 -13.71715 -13.51028 -13.35851 -13.08870 -12.94801 -12.89690 -12.58936 -12.48097 -12.41592 -12.14412 -11.95499 -11.54124 -11.36556 -11.15517 -10.79450 -10.37030 -10.25586 -10.04185 -9.73151 -9.28212 -8.49705 -5.98113 -0.62538 -0.08798 1.34518 1.38109 1.47330 1.51183 1.82767 2.01488 2.26713 2.35605 2.41197 2.93081 3.17098 3.20688 3.38361 3.48774 3.57756 3.74179 3.91400 4.13719 4.17680 4.24441 4.28928 4.39968 4.43405 4.49862 4.52483 4.55553 4.58773 4.66885 4.76362 4.90259 4.90940 4.96773 5.09800 5.32659 5.37724 5.38921 5.54324 5.89815 6.11739 6.18649 6.38123 6.45036 6.57832 6.99011 7.10153 7.52529 8.09366 8.67851 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.003922 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.318213 B = 7137.556400 C = 9742.478838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.063 0.937 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.055 3.945 7 C 0.553 3.447 8 O -0.551 6.551 9 C -0.199 4.199 10 C -0.003 4.003 11 C -0.173 4.173 12 C 0.304 3.696 13 F -0.114 7.114 14 N -0.551 5.551 15 C 0.175 3.825 16 N -0.683 5.683 17 C 0.065 3.935 18 C 0.432 3.568 19 O -0.620 6.620 20 N -0.571 5.571 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.266 1.266 28 H -0.276 1.276 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.206 0.794 38 H 0.203 0.797 39 H 0.144 0.856 40 H 0.339 0.661 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 5.796 -26.706 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.081 0.919 4 C -0.008 4.008 5 N -0.342 5.342 6 C -0.086 4.086 7 C 0.341 3.659 8 O -0.429 6.429 9 C -0.204 4.204 10 C -0.028 4.028 11 C -0.194 4.194 12 C 0.151 3.849 13 F -0.093 7.093 14 N -0.266 5.266 15 C 0.017 3.983 16 N -0.321 5.321 17 C -0.067 4.067 18 C 0.220 3.780 19 O -0.507 6.507 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.092 0.908 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.191 1.191 28 H -0.201 1.201 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.223 0.777 38 H 0.220 0.780 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.884 4.072 -25.499 26.112 hybrid contribution 0.868 0.481 0.950 1.374 sum 4.752 4.553 -24.549 25.416 Atomic orbital electron populations 1.21740 0.92955 1.02011 1.02577 1.22179 0.97214 0.96505 0.88996 0.91928 1.21914 0.78010 1.02615 0.98266 1.47880 1.07836 1.20834 1.57675 1.22597 0.95867 0.90510 0.99649 1.18284 0.87089 0.82837 0.77709 1.90918 1.64685 1.37945 1.49307 1.20926 0.94808 1.06285 0.98419 1.22485 0.91345 0.90603 0.98334 1.22225 0.97537 1.02343 0.97270 1.18932 0.78729 0.95343 0.91881 1.91637 1.28605 1.93627 1.95403 1.66944 1.05746 1.20853 1.33071 1.22414 0.88311 0.91497 0.96053 1.60193 1.35394 1.32363 1.04117 1.21585 1.01975 0.93590 0.89554 1.20968 0.83377 0.88089 0.85573 1.90524 1.56339 1.18246 1.85545 1.41901 1.58371 1.12498 1.08120 1.19624 1.42212 0.95827 0.88692 0.90791 1.25986 0.97152 0.96634 1.01171 1.69658 1.48534 1.09567 1.28188 0.84978 0.78514 0.78012 0.77145 1.19663 1.19053 1.20073 0.93325 0.88923 0.93481 0.84571 0.90979 0.87996 0.88189 0.90994 0.77690 0.77963 0.83874 0.83816 0.92172 0.87859 0.76991 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.41 71.98 0.68 -2.00 16 2 C 0.06 1.36 2.95 44.91 0.13 1.49 16 3 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 4 C 0.11 2.00 5.20 86.38 0.45 2.44 16 5 N -0.61 -10.84 2.66 -850.32 -2.26 -13.10 16 6 C 0.05 0.37 8.87 127.77 1.13 1.51 16 7 C 0.55 15.08 5.56 86.75 0.48 15.56 16 8 O -0.55 -21.06 15.39 -3.96 -0.06 -21.12 16 9 C -0.20 -4.81 5.27 -20.00 -0.11 -4.92 16 10 C 0.00 -0.03 7.69 22.72 0.17 0.14 16 11 C -0.17 -2.27 10.07 22.37 0.23 -2.04 16 12 C 0.30 7.23 8.41 84.76 0.71 7.94 16 13 F -0.11 -2.72 17.29 44.97 0.78 -1.94 16 14 N -0.55 -17.69 10.36 -195.73 -2.03 -19.71 16 15 C 0.17 5.66 10.80 85.02 0.92 6.58 16 16 N -0.68 -24.08 5.89 -495.58 -2.92 -27.00 16 17 C 0.07 2.44 5.97 85.56 0.51 2.95 16 18 C 0.43 22.25 7.82 87.66 0.69 22.94 16 19 O -0.62 -37.56 15.78 -3.07 -0.05 -37.61 16 20 N -0.57 -30.94 5.29 -306.98 -1.62 -32.56 16 21 C -0.33 -19.96 9.68 84.04 0.81 -19.15 16 22 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.92 -50.85 13.05 21.66 0.28 -50.57 16 25 Si 0.99 44.94 29.55 68.60 2.03 46.97 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 29 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 1.03 8.07 -2.39 -0.02 1.01 16 33 H 0.07 1.69 7.36 -2.39 -0.02 1.67 16 34 H 0.10 -0.04 6.88 -2.39 -0.02 -0.06 16 35 H 0.10 0.34 8.03 -2.39 -0.02 0.32 16 36 H 0.07 0.59 5.82 -2.39 -0.01 0.57 16 37 H 0.21 0.57 5.28 -2.91 -0.02 0.55 16 38 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.14 5.63 8.05 -2.91 -0.02 5.61 16 40 H 0.34 13.19 4.33 -89.70 -0.39 12.81 16 41 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 42 H 0.10 3.47 7.43 -2.39 -0.02 3.45 16 43 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 44 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -87.76 372.02 1.37 -86.39 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.05 Total: 36.86 kcal Atomic # 6 Polarization: 26.10 SS G_CDS: 7.28 Total: 33.38 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -8.55 Total: -142.94 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -0.11 Total: -58.72 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -87.76 1.37 -86.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676318350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -87.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds