Wall clock time and date at job start Tue Mar 31 2020 20:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47121 * 2 1 4 4 C 1.53000 * 109.47273 * 240.00339 * 2 1 3 5 5 N 1.46499 * 109.47398 * 184.99982 * 4 2 1 6 6 C 1.46502 * 119.99714 * 269.99886 * 5 4 2 7 7 C 1.34775 * 119.99897 * 89.99908 * 5 4 2 8 8 O 1.21514 * 120.00225 * 4.63859 * 7 5 4 9 9 C 1.48155 * 119.99700 * 184.64288 * 7 5 4 10 10 C 1.39897 * 120.91042 * 329.98538 * 9 7 5 11 11 C 1.38040 * 119.07121 * 179.97438 * 10 9 7 12 12 N 1.31875 * 120.93263 * 0.02618 * 11 10 9 13 13 C 1.31966 * 122.01545 * 359.68143 * 12 11 10 14 14 F 1.35097 * 119.58972 * 180.31573 * 13 12 11 15 15 C 1.38525 * 120.82105 * 0.57969 * 13 12 11 16 16 N 1.46902 * 109.47362 * 120.00067 * 2 1 3 17 17 C 1.46894 * 110.99927 * 275.00178 * 16 2 1 18 18 C 1.50709 * 109.47140 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99576 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99736 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99604 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99558 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00223 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99719 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47148 * 60.00040 * 25 23 21 27 27 H 1.48494 * 109.46942 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47230 * 300.00251 * 25 23 21 29 29 H 1.08998 * 109.47111 * 59.99663 * 1 2 3 30 30 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46875 * 299.99682 * 1 2 3 32 32 H 1.09003 * 109.47124 * 64.99198 * 4 2 1 33 33 H 1.09004 * 109.46488 * 305.00334 * 4 2 1 34 34 H 1.09004 * 109.47073 * 272.47693 * 6 5 4 35 35 H 1.08997 * 109.47477 * 32.48289 * 6 5 4 36 36 H 1.08998 * 109.46771 * 152.48216 * 6 5 4 37 37 H 1.08008 * 120.46393 * 0.02562 * 10 9 7 38 38 H 1.07995 * 119.53050 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.51094 * 179.73075 * 15 13 12 40 40 H 1.00898 * 110.99741 * 151.04732 * 16 2 1 41 41 H 1.09004 * 109.47045 * 299.99662 * 17 16 2 42 42 H 1.08996 * 109.47629 * 59.99595 * 17 16 2 43 43 H 0.96998 * 120.00111 * 359.97438 * 20 18 17 44 44 H 0.96997 * 119.99728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6117 8 8 3.3870 -2.8173 -0.2140 9 6 5.5484 -1.9572 -0.4602 10 6 6.3911 -1.3202 -1.3773 11 6 7.7577 -1.3989 -1.1993 12 7 8.2718 -2.0631 -0.1826 13 6 7.5143 -2.6736 0.7090 14 9 8.0930 -3.3348 1.7352 15 6 6.1333 -2.6496 0.6027 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5875 -0.5219 3.5560 19 8 2.8679 -1.6988 3.4701 20 7 2.7283 0.1204 4.7325 21 6 3.1882 -0.5567 5.8323 22 1 3.4371 -1.6049 5.7560 23 6 3.3340 0.1055 7.0451 24 7 3.0316 1.3810 7.1378 25 14 3.9599 -0.8172 8.5438 26 1 5.3153 -1.3551 8.2636 27 1 4.0239 0.1079 9.7036 28 1 3.0373 -1.9383 8.8558 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 4.5059 0.0322 -2.8186 35 1 3.8280 1.1932 -1.6521 36 1 5.2898 0.2661 -1.2378 37 1 5.9782 -0.7739 -2.2125 38 1 8.4151 -0.9096 -1.9027 39 1 5.5183 -3.1546 1.3328 40 1 2.9174 -1.1205 1.0286 41 1 2.7589 1.0462 2.1182 42 1 1.0872 0.6163 2.5525 43 1 2.5051 1.0619 4.8008 44 1 3.1337 1.8434 7.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676319278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:26 Heat of formation + Delta-G solvation = -40.694056 kcal Electronic energy + Delta-G solvation = -29836.898597 eV Core-core repulsion = 25512.482542 eV Total energy + Delta-G solvation = -4324.416055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.11376 -41.17777 -39.56143 -38.21739 -36.80950 -35.36050 -33.87268 -33.08448 -31.46877 -31.19567 -30.75195 -27.87110 -26.92029 -26.34629 -24.40688 -23.83596 -23.78913 -20.90033 -20.09342 -19.24107 -18.36396 -17.86044 -17.65908 -16.74733 -16.69739 -16.36345 -16.14119 -16.09744 -15.56662 -15.17660 -14.71012 -14.68078 -14.41463 -13.92804 -13.80550 -13.71820 -13.60261 -13.48078 -13.16899 -12.97965 -12.80786 -12.48623 -12.14881 -11.90866 -11.85392 -11.66874 -11.57092 -11.39062 -11.07466 -10.89363 -10.52794 -10.41048 -10.28573 -10.17754 -9.80707 -9.46048 -9.29055 -8.98687 -8.38050 -8.00147 -7.91530 -6.38277 -3.78760 0.34360 0.60133 2.41233 2.59184 3.23446 3.28370 3.28981 3.33573 3.34417 3.90085 3.94833 4.12241 4.25474 4.33559 4.38952 4.59189 4.70609 4.73890 4.94317 4.98147 5.10512 5.15422 5.21233 5.24103 5.27865 5.31768 5.38018 5.41327 5.64675 5.68499 5.71133 5.79746 5.98961 6.00625 6.09176 6.26210 6.29265 6.38427 6.92719 7.27791 7.29973 7.58608 7.70646 7.85972 8.10092 8.65543 9.21805 9.57955 10.10213 10.79556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.004061 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.623209 B = 6893.719547 C = 9356.883771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.041 0.959 4 C 0.112 3.888 5 N -0.615 5.615 6 C 0.055 3.945 7 C 0.550 3.450 8 O -0.487 6.487 9 C -0.057 4.057 10 C -0.176 4.176 11 C 0.130 3.870 12 N -0.501 5.501 13 C 0.311 3.689 14 F -0.104 7.104 15 C -0.130 4.130 16 N -0.658 5.658 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.349 0.651 41 H 0.037 0.963 42 H 0.086 0.914 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 2.747 -22.855 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.059 0.941 4 C -0.010 4.010 5 N -0.350 5.350 6 C -0.087 4.087 7 C 0.337 3.663 8 O -0.359 6.359 9 C -0.068 4.068 10 C -0.196 4.196 11 C -0.027 4.027 12 N -0.216 5.216 13 C 0.158 3.842 14 F -0.082 7.082 15 C -0.152 4.152 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.524 1.225 -22.212 22.523 hybrid contribution 0.229 0.898 0.837 1.249 sum 3.753 2.123 -21.375 21.806 Atomic orbital electron populations 1.21743 0.93770 1.02840 1.01272 1.21954 0.96617 0.95747 0.90313 0.94067 1.21845 0.78019 1.03496 0.97624 1.47735 1.07399 1.21042 1.58782 1.22542 0.96812 0.90944 0.98413 1.18169 0.86834 0.82825 0.78424 1.90942 1.63268 1.35648 1.46037 1.20154 0.94169 0.97070 0.95406 1.23005 0.94821 1.00443 1.01304 1.22511 0.92901 0.94026 0.93263 1.66875 1.41903 1.09184 1.03688 1.17971 0.87375 0.92842 0.85997 1.91678 1.85318 1.76938 1.54312 1.22102 0.93914 0.99572 0.99643 1.60177 1.35605 1.31392 1.02359 1.21742 1.01079 0.93807 0.91700 1.19826 0.85003 0.88287 0.84439 1.90546 1.54850 1.15964 1.84645 1.41851 1.58017 1.12336 1.07968 1.19658 1.39871 0.96398 0.86833 0.88005 1.25240 0.97698 0.95770 0.99176 1.69606 1.48852 1.08830 1.27225 0.85932 0.79478 0.78865 0.80062 1.19898 1.20983 1.19861 0.92768 0.91547 0.92161 0.89474 0.88372 0.91568 0.90666 0.89231 0.81882 0.80962 0.81639 0.82795 0.94502 0.89625 0.77572 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.42 37.16 0.35 -1.17 16 2 C 0.07 0.80 2.95 -67.71 -0.20 0.60 16 3 H 0.04 0.47 7.80 -51.92 -0.40 0.06 16 4 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 5 N -0.61 -6.29 2.66 -182.57 -0.49 -6.78 16 6 C 0.06 0.33 8.80 59.85 0.53 0.85 16 7 C 0.55 7.55 5.70 -12.19 -0.07 7.48 16 8 O -0.49 -8.75 15.25 5.35 0.08 -8.67 16 9 C -0.06 -0.69 5.54 -104.66 -0.58 -1.27 16 10 C -0.18 -1.42 7.58 -39.03 -0.30 -1.72 16 11 C 0.13 1.10 11.17 -17.61 -0.20 0.90 16 12 N -0.50 -6.27 10.35 -13.65 -0.14 -6.41 16 13 C 0.31 4.41 8.41 -17.39 -0.15 4.26 16 14 F -0.10 -1.58 17.29 2.25 0.04 -1.54 16 15 C -0.13 -1.87 9.68 -38.93 -0.38 -2.24 16 16 N -0.66 -11.59 5.88 -107.99 -0.63 -12.23 16 17 C 0.05 0.93 5.96 -4.97 -0.03 0.90 16 18 C 0.44 10.89 7.82 -10.98 -0.09 10.80 16 19 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 20 N -0.56 -14.77 5.29 -10.96 -0.06 -14.83 16 21 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 32 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.10 1.18 7.36 -51.93 -0.38 0.80 16 34 H 0.07 0.21 7.41 -51.93 -0.38 -0.17 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.09 0.53 4.76 -51.93 -0.25 0.29 16 37 H 0.16 0.73 4.69 -52.48 -0.25 0.48 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.17 2.66 7.99 -52.49 -0.42 2.24 16 40 H 0.35 6.62 4.31 -39.29 -0.17 6.45 16 41 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 42 H 0.09 1.48 7.44 -51.93 -0.39 1.09 16 43 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -36.39 370.98 -6.57 -42.96 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.39 Total: 13.62 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -1.36 Total: 12.34 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.60 Total: -64.53 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.17 Total: -25.03 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.39 -6.57 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676319278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.264 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds