Wall clock time and date at job start Tue Mar 31 2020 20:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47121 * 2 1 4 4 C 1.53000 * 109.47273 * 240.00339 * 2 1 3 5 5 N 1.46499 * 109.47398 * 184.99982 * 4 2 1 6 6 C 1.46502 * 119.99714 * 269.99886 * 5 4 2 7 7 C 1.34775 * 119.99897 * 89.99908 * 5 4 2 8 8 O 1.21514 * 120.00225 * 4.63859 * 7 5 4 9 9 C 1.48155 * 119.99700 * 184.64288 * 7 5 4 10 10 C 1.39897 * 120.91042 * 329.98538 * 9 7 5 11 11 C 1.38040 * 119.07121 * 179.97438 * 10 9 7 12 12 N 1.31875 * 120.93263 * 0.02618 * 11 10 9 13 13 C 1.31966 * 122.01545 * 359.68143 * 12 11 10 14 14 F 1.35097 * 119.58972 * 180.31573 * 13 12 11 15 15 C 1.38525 * 120.82105 * 0.57969 * 13 12 11 16 16 N 1.46902 * 109.47362 * 120.00067 * 2 1 3 17 17 C 1.46894 * 110.99927 * 275.00178 * 16 2 1 18 18 C 1.50709 * 109.47140 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99576 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99736 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99604 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99558 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00223 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99719 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47148 * 60.00040 * 25 23 21 27 27 H 1.48494 * 109.46942 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47230 * 300.00251 * 25 23 21 29 29 H 1.08998 * 109.47111 * 59.99663 * 1 2 3 30 30 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46875 * 299.99682 * 1 2 3 32 32 H 1.09003 * 109.47124 * 64.99198 * 4 2 1 33 33 H 1.09004 * 109.46488 * 305.00334 * 4 2 1 34 34 H 1.09004 * 109.47073 * 272.47693 * 6 5 4 35 35 H 1.08997 * 109.47477 * 32.48289 * 6 5 4 36 36 H 1.08998 * 109.46771 * 152.48216 * 6 5 4 37 37 H 1.08008 * 120.46393 * 0.02562 * 10 9 7 38 38 H 1.07995 * 119.53050 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.51094 * 179.73075 * 15 13 12 40 40 H 1.00898 * 110.99741 * 151.04732 * 16 2 1 41 41 H 1.09004 * 109.47045 * 299.99662 * 17 16 2 42 42 H 1.08996 * 109.47629 * 59.99595 * 17 16 2 43 43 H 0.96998 * 120.00111 * 359.97438 * 20 18 17 44 44 H 0.96997 * 119.99728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6117 8 8 3.3870 -2.8173 -0.2140 9 6 5.5484 -1.9572 -0.4602 10 6 6.3911 -1.3202 -1.3773 11 6 7.7577 -1.3989 -1.1993 12 7 8.2718 -2.0631 -0.1826 13 6 7.5143 -2.6736 0.7090 14 9 8.0930 -3.3348 1.7352 15 6 6.1333 -2.6496 0.6027 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5875 -0.5219 3.5560 19 8 2.8679 -1.6988 3.4701 20 7 2.7283 0.1204 4.7325 21 6 3.1882 -0.5567 5.8323 22 1 3.4371 -1.6049 5.7560 23 6 3.3340 0.1055 7.0451 24 7 3.0316 1.3810 7.1378 25 14 3.9599 -0.8172 8.5438 26 1 5.3153 -1.3551 8.2636 27 1 4.0239 0.1079 9.7036 28 1 3.0373 -1.9383 8.8558 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 4.5059 0.0322 -2.8186 35 1 3.8280 1.1932 -1.6521 36 1 5.2898 0.2661 -1.2378 37 1 5.9782 -0.7739 -2.2125 38 1 8.4151 -0.9096 -1.9027 39 1 5.5183 -3.1546 1.3328 40 1 2.9174 -1.1205 1.0286 41 1 2.7589 1.0462 2.1182 42 1 1.0872 0.6163 2.5525 43 1 2.5051 1.0619 4.8008 44 1 3.1337 1.8434 7.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676319278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:26 Heat of formation + Delta-G solvation = -70.064345 kcal Electronic energy + Delta-G solvation = -29838.172189 eV Core-core repulsion = 25512.482542 eV Total energy + Delta-G solvation = -4325.689647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.22222 -42.08817 -40.56775 -40.05838 -37.96130 -36.43512 -35.91253 -34.06659 -33.33019 -32.40477 -31.86995 -28.54826 -28.06041 -27.77681 -25.89199 -25.05703 -24.67537 -21.89228 -21.22315 -20.94150 -19.97678 -19.26861 -18.62335 -18.09825 -17.60221 -17.45909 -17.21356 -17.13093 -16.95375 -16.50421 -16.34257 -16.06470 -15.60936 -15.45657 -15.09585 -14.76936 -14.71124 -14.38863 -14.28713 -14.15666 -13.82233 -13.68118 -13.51622 -13.37030 -13.02160 -12.93392 -12.70839 -12.56874 -12.47486 -12.40075 -12.14860 -11.98397 -11.56361 -11.55303 -11.24068 -10.73122 -10.39749 -10.15061 -10.06104 -9.78940 -9.30945 -8.50952 -5.99761 -0.56757 -0.29445 1.35432 1.37204 1.46801 1.48325 1.75131 1.99583 2.25573 2.38622 2.45389 2.90267 3.10250 3.15553 3.45790 3.46309 3.67208 3.67964 3.88049 4.11399 4.18042 4.21508 4.31932 4.34249 4.37712 4.44282 4.51513 4.54010 4.60570 4.65592 4.75540 4.87042 4.89870 4.94947 5.07489 5.30326 5.36050 5.38217 5.50846 5.87728 6.08126 6.15209 6.40813 6.42129 6.56149 6.90627 7.08326 7.50487 8.07472 8.66295 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.004061 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.623209 B = 6893.719547 C = 9356.883771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.065 0.935 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.040 3.960 7 C 0.543 3.457 8 O -0.549 6.549 9 C -0.069 4.069 10 C -0.141 4.141 11 C 0.142 3.858 12 N -0.516 5.516 13 C 0.286 3.714 14 F -0.123 7.123 15 C -0.159 4.159 16 N -0.685 5.685 17 C 0.065 3.935 18 C 0.431 3.569 19 O -0.622 6.622 20 N -0.570 5.570 21 C -0.337 4.337 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.917 5.917 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.265 1.265 28 H -0.273 1.273 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.214 0.786 38 H 0.228 0.772 39 H 0.126 0.874 40 H 0.339 0.661 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.397 0.603 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 6.155 -26.064 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.083 0.917 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.100 4.100 7 C 0.331 3.669 8 O -0.426 6.426 9 C -0.080 4.080 10 C -0.160 4.160 11 C -0.015 4.015 12 N -0.231 5.231 13 C 0.134 3.866 14 F -0.102 7.102 15 C -0.182 4.182 16 N -0.322 5.322 17 C -0.067 4.067 18 C 0.219 3.781 19 O -0.509 6.509 20 N -0.208 5.208 21 C -0.466 4.466 22 H 0.091 0.909 23 C -0.209 4.209 24 N -0.558 5.558 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.189 1.189 28 H -0.198 1.198 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.230 0.770 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.231 0.769 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.900 4.710 -25.444 26.168 hybrid contribution 0.070 -0.054 1.687 1.689 sum 3.970 4.656 -23.757 24.533 Atomic orbital electron populations 1.21742 0.92891 1.01998 1.02653 1.22187 0.97273 0.96564 0.88879 0.91741 1.21940 0.77823 1.02658 0.98440 1.47858 1.07986 1.20680 1.57201 1.22964 0.96297 0.90349 1.00365 1.18489 0.87214 0.83146 0.78091 1.90906 1.64534 1.38263 1.48872 1.20224 0.94147 0.97818 0.95849 1.23546 0.94102 0.97823 1.00558 1.23547 0.93938 0.91907 0.92145 1.66978 1.42032 1.09712 1.04382 1.18010 0.87299 0.94442 0.86801 1.91608 1.85508 1.77664 1.55437 1.21862 0.93940 1.01635 1.00744 1.60187 1.35360 1.32447 1.04198 1.21589 1.02039 0.93576 0.89496 1.20979 0.83444 0.88084 0.85622 1.90523 1.56429 1.18353 1.85562 1.41893 1.58308 1.12465 1.08105 1.19587 1.42458 0.95812 0.88749 0.90862 1.25991 0.97079 0.96639 1.01152 1.69655 1.48370 1.09512 1.28273 0.85039 0.78627 0.77961 0.77013 1.19944 1.18879 1.19837 0.88820 0.93546 0.93276 0.84320 0.91045 0.87378 0.88562 0.89290 0.76966 0.75554 0.85612 0.83913 0.92054 0.87802 0.76943 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.42 71.98 0.68 -2.00 16 2 C 0.06 1.36 2.95 44.92 0.13 1.49 16 3 H 0.06 1.17 7.80 -2.38 -0.02 1.15 16 4 C 0.11 1.99 5.23 86.38 0.45 2.44 16 5 N -0.60 -10.78 2.66 -849.83 -2.26 -13.04 16 6 C 0.04 0.25 8.80 127.77 1.12 1.38 16 7 C 0.54 15.10 5.70 86.88 0.50 15.59 16 8 O -0.55 -21.39 15.25 -3.76 -0.06 -21.45 16 9 C -0.07 -1.70 5.54 -19.89 -0.11 -1.81 16 10 C -0.14 -1.79 7.58 22.62 0.17 -1.62 16 11 C 0.14 1.89 11.17 84.64 0.95 2.83 16 12 N -0.52 -12.54 10.35 -197.09 -2.04 -14.57 16 13 C 0.29 8.75 8.41 84.74 0.71 9.47 16 14 F -0.12 -4.21 17.29 44.97 0.78 -3.43 16 15 C -0.16 -5.10 9.68 22.69 0.22 -4.88 16 16 N -0.68 -24.32 5.88 -495.56 -2.91 -27.23 16 17 C 0.07 2.45 5.96 85.56 0.51 2.96 16 18 C 0.43 22.31 7.82 87.66 0.69 22.99 16 19 O -0.62 -38.03 15.78 -3.05 -0.05 -38.08 16 20 N -0.57 -30.92 5.29 -306.98 -1.62 -32.55 16 21 C -0.34 -20.13 9.68 84.04 0.81 -19.32 16 22 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 24 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 25 Si 0.99 44.81 29.55 68.60 2.03 46.84 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.08 7.45 -2.39 -0.02 1.06 16 32 H 0.14 1.03 8.07 -2.39 -0.02 1.01 16 33 H 0.07 1.69 7.36 -2.38 -0.02 1.67 16 34 H 0.11 -0.13 7.41 -2.39 -0.02 -0.14 16 35 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 36 H 0.09 0.59 4.76 -2.39 -0.01 0.58 16 37 H 0.21 0.51 4.69 -2.91 -0.01 0.50 16 38 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.13 4.90 7.99 -2.91 -0.02 4.87 16 40 H 0.34 13.34 4.31 -89.70 -0.39 12.95 16 41 H 0.06 1.99 8.06 -2.38 -0.02 1.97 16 42 H 0.10 3.49 7.44 -2.39 -0.02 3.48 16 43 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 44 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -89.59 370.98 1.39 -88.19 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.05 Total: 36.17 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 7.30 Total: 29.51 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -8.55 Total: -137.76 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -0.11 Total: -59.53 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -89.59 1.39 -88.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676319278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.130 kcal (2) G-P(sol) polarization free energy of solvation -89.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds