Wall clock time and date at job start Tue Mar 31 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 N 1.46497 * 109.46649 * 120.00292 * 2 1 3 5 5 C 1.34772 * 119.99830 * 274.99440 * 4 2 1 6 6 O 1.21282 * 120.00381 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00112 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47331 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00037 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00030 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99942 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99964 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99660 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47150 * 90.00295 * 13 11 9 15 15 H 1.48505 * 109.46685 * 209.99765 * 13 11 9 16 16 H 1.48493 * 109.47539 * 329.99362 * 13 11 9 17 17 C 1.53002 * 109.46896 * 239.99767 * 2 1 3 18 18 C 1.53501 * 114.20448 * 184.44004 * 17 2 1 19 19 N 1.47062 * 87.98635 * 220.34948 * 18 17 2 20 20 C 1.34776 * 136.05291 * 207.08254 * 19 18 17 21 21 O 1.21611 * 119.99666 * 174.65313 * 20 19 18 22 22 C 1.47095 * 120.00416 * 354.92954 * 20 19 18 23 23 C 1.32617 * 124.62434 * 184.16680 * 22 20 19 24 24 C 1.51104 * 110.76120 * 179.90563 * 23 22 20 25 25 C 1.54579 * 104.89450 * 343.74960 * 24 23 22 26 26 C 1.51114 * 124.61952 * 4.47459 * 22 20 19 27 27 C 1.47060 * 87.88657 * 27.34641 * 19 18 17 28 28 H 1.08992 * 109.47109 * 295.02711 * 1 2 3 29 29 H 1.08999 * 109.46866 * 55.02812 * 1 2 3 30 30 H 1.09003 * 109.47318 * 175.01751 * 1 2 3 31 31 H 0.96999 * 120.00360 * 95.00686 * 4 2 1 32 32 H 1.09006 * 109.46930 * 300.00096 * 7 5 4 33 33 H 1.08994 * 109.47281 * 60.00381 * 7 5 4 34 34 H 0.96997 * 119.99736 * 179.97438 * 12 11 9 35 35 H 1.08991 * 113.28760 * 317.50982 * 17 2 1 36 36 H 1.08997 * 113.46354 * 105.56596 * 18 17 2 37 37 H 1.09004 * 113.51941 * 335.14428 * 18 17 2 38 38 H 1.08000 * 124.61765 * 0.02562 * 23 22 20 39 39 H 1.09008 * 110.49785 * 224.81669 * 24 23 22 40 40 H 1.08996 * 110.18583 * 102.53039 * 24 23 22 41 41 H 1.09004 * 110.98313 * 266.74369 * 25 24 23 42 42 H 1.08997 * 110.98700 * 142.94509 * 25 24 23 43 43 H 1.09001 * 110.36145 * 315.39547 * 26 22 20 44 44 H 1.09001 * 110.36638 * 77.71858 * 26 22 20 45 45 H 1.08998 * 113.47443 * 87.43870 * 27 19 18 46 46 H 1.09004 * 113.47097 * 217.87881 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6498 -0.7287 3.5875 8 16 2.7099 0.4342 4.9733 9 6 3.3130 -0.6311 6.2406 10 1 3.5231 -1.6673 6.0204 11 6 3.5190 -0.1382 7.5217 12 7 3.9690 -0.9342 8.4686 13 14 3.1562 1.6542 7.9023 14 1 1.7453 1.7906 8.3450 15 1 4.0613 2.1239 8.9819 16 1 3.3739 2.4731 6.6829 17 6 2.0400 -0.7213 -1.2492 18 6 3.5658 -0.8793 -1.3060 19 7 3.4927 -0.5672 -2.7413 20 6 4.2252 -0.8550 -3.8354 21 8 3.8355 -0.5127 -4.9353 22 6 5.4930 -1.5885 -3.6998 23 6 6.3227 -1.8505 -4.7006 24 6 7.5284 -2.6178 -4.2099 25 6 7.5197 -2.4324 -2.6753 26 6 6.0244 -2.1519 -2.4022 27 6 2.2725 0.2025 -2.4563 28 1 -0.3633 0.4347 0.9311 29 1 -0.3633 0.5890 -0.8421 30 1 -0.3634 -1.0238 -0.0893 31 1 2.2490 -1.6318 1.1526 32 1 1.9774 -1.5509 3.8325 33 1 3.6490 -1.1205 3.3980 34 1 4.1134 -0.5896 9.3637 35 1 1.4876 -1.6331 -1.4760 36 1 3.9050 -1.8942 -1.0991 37 1 4.1027 -0.1290 -0.7254 38 1 6.1598 -1.5541 -5.7263 39 1 8.4429 -2.2054 -4.6365 40 1 7.4322 -3.6730 -4.4651 41 1 8.1363 -1.5830 -2.3812 42 1 7.8448 -3.3421 -2.1704 43 1 5.9157 -1.4226 -1.5994 44 1 5.5050 -3.0762 -2.1491 45 1 2.4674 1.2384 -2.1788 46 1 1.5098 0.1091 -3.2294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678608021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:57 Heat of formation + Delta-G solvation = -24.282647 kcal Electronic energy + Delta-G solvation = -26281.452925 eV Core-core repulsion = 22491.668946 eV Total energy + Delta-G solvation = -3789.783978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13619 -39.62702 -38.77736 -37.64933 -35.16782 -32.47115 -31.83221 -30.36738 -29.29599 -28.69271 -28.44749 -26.25795 -25.64475 -24.20375 -21.92006 -21.19724 -20.59154 -20.23623 -18.67162 -17.93413 -17.21823 -16.78258 -16.52337 -16.50886 -15.98464 -15.26326 -15.15201 -14.97828 -14.55713 -14.24560 -13.99480 -13.77328 -13.42305 -13.28546 -13.01999 -12.96218 -12.83933 -12.81990 -12.44431 -12.36800 -12.12606 -12.09204 -11.78046 -11.64875 -11.64028 -11.30325 -11.22864 -11.03723 -10.95495 -10.62831 -10.19429 -9.88581 -9.56796 -9.43045 -9.12598 -9.03161 -8.98638 -8.53761 -6.95408 -6.32022 -4.03989 0.99713 2.42313 2.69161 2.90615 2.94341 3.19390 3.30842 3.47690 3.55693 3.90665 3.98807 4.11028 4.30164 4.34163 4.40404 4.57565 4.58857 4.69345 4.76523 4.82313 4.95522 5.01566 5.07162 5.11568 5.14283 5.18514 5.23095 5.25875 5.29078 5.31287 5.37372 5.46664 5.54597 5.57128 5.69684 5.71645 5.74987 5.87372 5.95794 5.96694 6.09483 6.12392 6.48174 7.32794 7.53815 7.82155 7.91016 8.38409 8.42844 9.14206 10.77188 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002339 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.488854 B =11966.815491 C =13484.722962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.093 0.907 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.517 6.517 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.135 4.135 18 C 0.104 3.896 19 N -0.643 5.643 20 C 0.596 3.404 21 O -0.543 6.543 22 C -0.190 4.190 23 C -0.073 4.073 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.091 4.091 27 C 0.116 3.884 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -4.880 -24.986 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.275 4.275 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.681 3.319 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.154 4.154 18 C -0.019 4.019 19 N -0.377 5.377 20 C 0.388 3.612 21 O -0.422 6.422 22 C -0.193 4.193 23 C -0.092 4.092 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.128 4.128 27 C -0.007 4.007 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.443 -2.801 -25.475 25.669 hybrid contribution 0.344 -1.203 0.403 1.315 sum 1.788 -4.005 -25.072 25.452 Atomic orbital electron populations 1.22180 0.94757 1.02181 1.03016 1.20779 0.94493 0.97179 0.82453 0.88896 1.46015 1.69325 1.14017 1.09337 1.20280 0.76865 0.87216 0.83780 1.90707 1.48339 1.15753 1.84356 1.23285 1.04466 1.03493 0.96285 1.84808 1.87184 1.16466 1.03094 1.22307 1.50609 0.98705 0.95292 0.89389 1.24719 0.93364 0.98284 0.94971 1.69935 1.43409 1.35784 1.02532 0.86736 0.79329 0.85218 0.80569 1.19213 1.19958 1.15917 1.23414 0.96283 1.00602 0.95147 1.23194 0.95765 1.02568 0.80366 1.49396 1.28267 1.52592 1.07476 1.17515 0.82541 0.78849 0.82262 1.90801 1.71070 1.55263 1.25078 1.21734 0.95784 1.03902 0.97912 1.24075 0.93965 0.92426 0.98752 1.21496 0.96656 1.00346 0.95949 1.22454 0.95949 1.02564 0.95231 1.21372 0.95650 1.00716 0.95100 1.23026 0.86221 0.96101 0.95369 0.91433 0.91685 0.92373 0.76704 0.88506 0.88477 0.91923 0.86931 0.89735 0.88982 0.84488 0.90082 0.89542 0.90659 0.90265 0.90511 0.90276 0.89132 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.47 37.16 0.35 -1.06 16 2 C 0.16 1.37 2.48 -67.93 -0.17 1.20 16 3 H 0.09 0.98 7.24 -51.93 -0.38 0.60 16 4 N -0.73 -7.48 4.74 -53.80 -0.26 -7.74 16 5 C 0.53 8.33 7.81 -10.99 -0.09 8.25 16 6 O -0.52 -10.15 15.53 5.56 0.09 -10.06 16 7 C -0.12 -2.21 6.16 36.01 0.22 -1.99 16 8 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 9 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 10 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 11 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 12 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 13 Si 0.86 21.35 27.74 -169.99 -4.71 16.63 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 17 C -0.13 -0.88 3.59 -89.96 -0.32 -1.21 16 18 C 0.10 0.73 5.78 -8.51 -0.05 0.68 16 19 N -0.64 -6.06 3.69 -186.48 -0.69 -6.75 16 20 C 0.60 7.01 8.04 -12.67 -0.10 6.91 16 21 O -0.54 -8.31 17.55 5.27 0.09 -8.22 16 22 C -0.19 -1.76 6.09 -102.73 -0.63 -2.39 16 23 C -0.07 -0.58 10.44 -36.01 -0.38 -0.96 16 24 C -0.11 -0.60 6.80 -26.86 -0.18 -0.78 16 25 C -0.12 -0.72 7.16 -25.07 -0.18 -0.90 16 26 C -0.09 -0.63 5.01 -26.85 -0.13 -0.77 16 27 C 0.12 0.91 8.19 -8.38 -0.07 0.84 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 32 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 33 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.08 0.48 6.78 -51.93 -0.35 0.13 16 37 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.14 1.11 8.04 -52.49 -0.42 0.68 16 39 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.53 6.57 -51.93 -0.34 0.19 16 44 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 45 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -35.81 392.33 -9.60 -45.42 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.31 Total: -0.64 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.51 Total: -3.80 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.17 Total: -39.80 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.18 Total: -18.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.63 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.81 -9.60 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678608021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.134 kcal (2) G-P(sol) polarization free energy of solvation -35.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds