Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 N 1.46497 * 109.46649 * 120.00292 * 2 1 3 5 5 C 1.34772 * 119.99830 * 274.99440 * 4 2 1 6 6 O 1.21282 * 120.00381 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00112 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47331 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00037 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00030 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99942 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99964 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99660 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47150 * 90.00295 * 13 11 9 15 15 H 1.48505 * 109.46685 * 209.99765 * 13 11 9 16 16 H 1.48493 * 109.47539 * 329.99362 * 13 11 9 17 17 C 1.53002 * 109.46896 * 239.99767 * 2 1 3 18 18 C 1.53501 * 114.20448 * 184.44004 * 17 2 1 19 19 N 1.47062 * 87.98635 * 220.34948 * 18 17 2 20 20 C 1.34776 * 136.05291 * 207.08254 * 19 18 17 21 21 O 1.21611 * 119.99666 * 174.65313 * 20 19 18 22 22 C 1.47095 * 120.00416 * 354.92954 * 20 19 18 23 23 C 1.32617 * 124.62434 * 184.16680 * 22 20 19 24 24 C 1.51104 * 110.76120 * 179.90563 * 23 22 20 25 25 C 1.54579 * 104.89450 * 343.74960 * 24 23 22 26 26 C 1.51114 * 124.61952 * 4.47459 * 22 20 19 27 27 C 1.47060 * 87.88657 * 27.34641 * 19 18 17 28 28 H 1.08992 * 109.47109 * 295.02711 * 1 2 3 29 29 H 1.08999 * 109.46866 * 55.02812 * 1 2 3 30 30 H 1.09003 * 109.47318 * 175.01751 * 1 2 3 31 31 H 0.96999 * 120.00360 * 95.00686 * 4 2 1 32 32 H 1.09006 * 109.46930 * 300.00096 * 7 5 4 33 33 H 1.08994 * 109.47281 * 60.00381 * 7 5 4 34 34 H 0.96997 * 119.99736 * 179.97438 * 12 11 9 35 35 H 1.08991 * 113.28760 * 317.50982 * 17 2 1 36 36 H 1.08997 * 113.46354 * 105.56596 * 18 17 2 37 37 H 1.09004 * 113.51941 * 335.14428 * 18 17 2 38 38 H 1.08000 * 124.61765 * 0.02562 * 23 22 20 39 39 H 1.09008 * 110.49785 * 224.81669 * 24 23 22 40 40 H 1.08996 * 110.18583 * 102.53039 * 24 23 22 41 41 H 1.09004 * 110.98313 * 266.74369 * 25 24 23 42 42 H 1.08997 * 110.98700 * 142.94509 * 25 24 23 43 43 H 1.09001 * 110.36145 * 315.39547 * 26 22 20 44 44 H 1.09001 * 110.36638 * 77.71858 * 26 22 20 45 45 H 1.08998 * 113.47443 * 87.43870 * 27 19 18 46 46 H 1.09004 * 113.47097 * 217.87881 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6498 -0.7287 3.5875 8 16 2.7099 0.4342 4.9733 9 6 3.3130 -0.6311 6.2406 10 1 3.5231 -1.6673 6.0204 11 6 3.5190 -0.1382 7.5217 12 7 3.9690 -0.9342 8.4686 13 14 3.1562 1.6542 7.9023 14 1 1.7453 1.7906 8.3450 15 1 4.0613 2.1239 8.9819 16 1 3.3739 2.4731 6.6829 17 6 2.0400 -0.7213 -1.2492 18 6 3.5658 -0.8793 -1.3060 19 7 3.4927 -0.5672 -2.7413 20 6 4.2252 -0.8550 -3.8354 21 8 3.8355 -0.5127 -4.9353 22 6 5.4930 -1.5885 -3.6998 23 6 6.3227 -1.8505 -4.7006 24 6 7.5284 -2.6178 -4.2099 25 6 7.5197 -2.4324 -2.6753 26 6 6.0244 -2.1519 -2.4022 27 6 2.2725 0.2025 -2.4563 28 1 -0.3633 0.4347 0.9311 29 1 -0.3633 0.5890 -0.8421 30 1 -0.3634 -1.0238 -0.0893 31 1 2.2490 -1.6318 1.1526 32 1 1.9774 -1.5509 3.8325 33 1 3.6490 -1.1205 3.3980 34 1 4.1134 -0.5896 9.3637 35 1 1.4876 -1.6331 -1.4760 36 1 3.9050 -1.8942 -1.0991 37 1 4.1027 -0.1290 -0.7254 38 1 6.1598 -1.5541 -5.7263 39 1 8.4429 -2.2054 -4.6365 40 1 7.4322 -3.6730 -4.4651 41 1 8.1363 -1.5830 -2.3812 42 1 7.8448 -3.3421 -2.1704 43 1 5.9157 -1.4226 -1.5994 44 1 5.5050 -3.0762 -2.1491 45 1 2.4674 1.2384 -2.1788 46 1 1.5098 0.1091 -3.2294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678608021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = -48.487186 kcal Electronic energy + Delta-G solvation = -26282.502512 eV Core-core repulsion = 22491.668946 eV Total energy + Delta-G solvation = -3790.833566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87892 -40.65219 -39.59122 -38.42387 -36.17017 -34.64242 -32.86300 -31.15369 -30.06352 -29.64788 -29.05667 -27.81828 -26.87682 -24.97515 -22.67485 -21.79016 -21.55877 -21.02322 -19.83298 -19.33191 -18.02663 -17.76515 -17.64080 -17.28799 -17.07119 -16.60335 -16.38105 -16.04183 -15.80013 -15.25971 -14.96647 -14.84615 -14.69375 -14.57793 -13.93609 -13.78797 -13.63794 -13.50362 -13.31465 -13.25867 -13.09902 -12.99541 -12.98697 -12.69570 -12.61943 -12.51244 -12.13483 -12.10843 -11.94205 -11.82908 -11.57764 -11.14645 -11.04095 -10.88172 -10.48195 -10.13750 -10.07170 -9.69247 -8.95081 -8.49019 -6.18588 0.30190 1.03213 1.33221 1.49140 1.58478 1.65134 1.72457 2.15416 2.22943 2.27600 2.74860 2.89594 3.22806 3.33613 3.59089 3.68078 3.83069 3.96423 4.01573 4.10977 4.17232 4.26606 4.31001 4.35199 4.44114 4.50386 4.52081 4.54913 4.55840 4.64117 4.78650 4.81438 4.82588 4.92496 4.94786 5.03412 5.15849 5.18512 5.32309 5.37151 5.38249 5.50600 5.54005 5.73594 6.14824 6.55424 6.57770 6.96849 6.99515 7.28827 8.63225 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002339 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.488854 B =11966.815491 C =13484.722962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.077 0.923 4 N -0.706 5.706 5 C 0.539 3.461 6 O -0.561 6.561 7 C -0.112 4.112 8 S -0.180 6.180 9 C -0.525 4.525 10 H 0.064 0.936 11 C 0.044 3.956 12 N -0.918 5.918 13 Si 0.913 3.087 14 H -0.264 1.264 15 H -0.262 1.262 16 H -0.236 1.236 17 C -0.111 4.111 18 C 0.104 3.896 19 N -0.645 5.645 20 C 0.586 3.414 21 O -0.593 6.593 22 C -0.213 4.213 23 C -0.070 4.070 24 C -0.103 4.103 25 C -0.123 4.123 26 C -0.087 4.087 27 C 0.108 3.892 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.418 0.582 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.276 0.724 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -5.845 -25.949 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.095 0.905 4 N -0.359 5.359 5 C 0.325 3.675 6 O -0.439 6.439 7 C -0.262 4.262 8 S 0.047 5.953 9 C -0.673 4.673 10 H 0.082 0.918 11 C -0.161 4.161 12 N -0.556 5.556 13 Si 0.735 3.265 14 H -0.189 1.189 15 H -0.186 1.186 16 H -0.159 1.159 17 C -0.130 4.130 18 C -0.018 4.018 19 N -0.378 5.378 20 C 0.379 3.621 21 O -0.476 6.476 22 C -0.215 4.215 23 C -0.089 4.089 24 C -0.140 4.140 25 C -0.161 4.161 26 C -0.124 4.124 27 C -0.015 4.015 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.620 -3.813 -26.434 26.757 hybrid contribution 0.268 -0.991 0.541 1.161 sum 1.888 -4.804 -25.893 26.402 Atomic orbital electron populations 1.22150 0.94192 1.03362 1.02128 1.20828 0.94810 0.96565 0.82310 0.90517 1.45734 1.67415 1.14711 1.08072 1.19877 0.76719 0.86515 0.84433 1.90705 1.50625 1.17538 1.85043 1.23287 1.06351 1.02145 0.94459 1.84755 1.86961 1.18563 1.05022 1.22469 1.49961 0.98248 0.96609 0.91798 1.25555 0.93394 1.02085 0.95053 1.70015 1.44781 1.37642 1.03167 0.85884 0.79405 0.80665 0.80527 1.18881 1.18636 1.15940 1.23250 0.96117 1.00557 0.93085 1.23334 0.95959 1.03731 0.78796 1.49487 1.28189 1.52052 1.08022 1.18000 0.83291 0.78719 0.82049 1.90760 1.72419 1.57531 1.26898 1.21851 0.95227 1.04874 0.99592 1.24346 0.94647 0.91610 0.98342 1.21545 0.95807 1.00752 0.95899 1.22486 0.95061 1.03214 0.95296 1.21384 0.96417 1.00900 0.93712 1.23175 0.85926 0.96512 0.95914 0.94373 0.90135 0.90583 0.74514 0.86930 0.86532 0.91469 0.84827 0.87609 0.89267 0.85314 0.88877 0.88084 0.90872 0.88754 0.90619 0.89233 0.88959 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.47 71.98 0.68 -1.73 16 2 C 0.16 2.42 2.48 44.99 0.11 2.53 16 3 H 0.08 1.51 7.24 -2.39 -0.02 1.49 16 4 N -0.71 -12.38 4.74 -442.53 -2.10 -14.48 16 5 C 0.54 15.86 7.81 87.66 0.68 16.55 16 6 O -0.56 -21.57 15.53 -3.04 -0.05 -21.61 16 7 C -0.11 -3.75 6.16 71.24 0.44 -3.31 16 8 S -0.18 -8.63 18.55 -56.49 -1.05 -9.67 16 9 C -0.53 -29.51 10.04 67.96 0.68 -28.82 16 10 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 11 C 0.04 2.55 5.50 84.86 0.47 3.01 16 12 N -0.92 -54.86 13.97 21.65 0.30 -54.56 16 13 Si 0.91 44.09 27.74 68.60 1.90 46.00 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 17 C -0.11 -1.13 3.59 -10.37 -0.04 -1.17 16 18 C 0.10 1.19 5.78 83.18 0.48 1.67 16 19 N -0.64 -11.33 3.69 -862.15 -3.18 -14.51 16 20 C 0.59 13.64 8.04 86.57 0.70 14.34 16 21 O -0.59 -18.66 17.55 -4.07 -0.07 -18.73 16 22 C -0.21 -3.73 6.09 -18.57 -0.11 -3.85 16 23 C -0.07 -1.06 10.44 24.65 0.26 -0.81 16 24 C -0.10 -0.93 6.80 30.51 0.21 -0.72 16 25 C -0.12 -1.11 7.16 31.67 0.23 -0.88 16 26 C -0.09 -1.01 5.01 30.52 0.15 -0.86 16 27 C 0.11 1.54 8.19 83.27 0.68 2.22 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.42 4.52 8.60 -92.71 -0.80 3.72 16 32 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.12 3.49 8.14 -2.40 -0.02 3.47 16 34 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.13 0.94 8.12 -2.39 -0.02 0.92 16 36 H 0.11 0.81 6.78 -2.39 -0.02 0.79 16 37 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 38 H 0.13 2.11 8.04 -2.91 -0.02 2.09 16 39 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.88 6.57 -2.39 -0.02 0.86 16 44 H 0.09 0.83 7.96 -2.39 -0.02 0.82 16 45 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 46 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -79.98 392.33 1.53 -78.45 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.15 Total: 10.95 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.62 Total: -1.82 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -4.97 Total: -83.55 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.12 Total: -40.35 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.67 kcal Total: -79.98 1.53 -78.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678608021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.963 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds