Wall clock time and date at job start Tue Mar 31 2020 20:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47899 * 2 1 4 4 N 1.46504 * 109.47740 * 239.99379 * 2 1 3 5 5 C 1.34775 * 119.99625 * 84.99935 * 4 2 1 6 6 O 1.21276 * 120.00236 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99600 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47218 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00212 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99847 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00073 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46615 * 60.00535 * 13 11 9 15 15 H 1.48503 * 109.47083 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47192 * 300.00231 * 13 11 9 17 17 C 1.53006 * 109.46779 * 119.99407 * 2 1 3 18 18 C 1.53946 * 113.74547 * 281.82341 * 17 2 1 19 19 N 1.47807 * 86.03850 * 222.08328 * 18 17 2 20 20 C 1.34775 * 134.45842 * 204.64636 * 19 18 17 21 21 O 1.21609 * 120.00457 * 179.86336 * 20 19 18 22 22 C 1.47105 * 119.99766 * 359.86565 * 20 19 18 23 23 C 1.32609 * 124.61885 * 179.70109 * 22 20 19 24 24 C 1.51120 * 110.75729 * 179.83866 * 23 22 20 25 25 C 1.54576 * 104.89918 * 343.80944 * 24 23 22 26 26 C 1.51106 * 124.61916 * 359.97438 * 22 20 19 27 27 C 1.47582 * 91.05355 * 24.54675 * 19 18 17 28 28 H 1.09004 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47789 * 300.07368 * 1 2 3 30 30 H 1.09008 * 109.46635 * 60.06801 * 1 2 3 31 31 H 0.97002 * 120.00078 * 265.00894 * 4 2 1 32 32 H 1.09005 * 109.47414 * 300.00476 * 7 5 4 33 33 H 1.09004 * 109.47433 * 60.00621 * 7 5 4 34 34 H 0.97002 * 119.99733 * 179.97438 * 12 11 9 35 35 H 1.09001 * 112.94238 * 53.41783 * 17 2 1 36 36 H 1.08994 * 113.76534 * 336.35271 * 18 17 2 37 37 H 1.09002 * 113.76688 * 107.73937 * 18 17 2 38 38 H 1.07994 * 124.62144 * 0.02562 * 23 22 20 39 39 H 1.08997 * 110.51759 * 224.84876 * 24 23 22 40 40 H 1.09005 * 110.14548 * 102.57121 * 24 23 22 41 41 H 1.09000 * 110.97852 * 266.70609 * 25 24 23 42 42 H 1.08997 * 110.97996 * 142.91172 * 25 24 23 43 43 H 1.08998 * 110.36958 * 315.44465 * 26 22 20 44 44 H 1.09001 * 110.36668 * 77.76230 * 26 22 20 45 45 H 1.08996 * 113.77495 * 221.15489 * 27 19 18 46 46 H 1.09006 * 113.87062 * 89.76568 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7291 -3.5875 8 16 2.7109 0.4340 -4.9730 9 6 3.3141 -0.6313 -6.2402 10 1 3.5227 -1.6679 -6.0203 11 6 3.5203 -0.1385 -7.5213 12 7 3.2657 1.1248 -7.7894 13 14 4.1605 -1.2678 -8.8646 14 1 3.2099 -2.3915 -9.0612 15 1 4.2939 -0.5042 -10.1313 16 1 5.4871 -1.8050 -8.4690 17 6 2.0398 -0.7212 1.2494 18 6 1.9742 0.1331 2.5284 19 7 3.3095 -0.4177 2.8419 20 6 4.0079 -0.6112 3.9783 21 8 5.1195 -1.1022 3.9328 22 6 3.4253 -0.2283 5.2737 23 6 4.0271 -0.3822 6.4453 24 6 3.1491 0.1193 7.5683 25 6 2.0752 0.9887 6.8753 26 6 2.0574 0.3886 5.4511 27 6 3.5700 -0.6730 1.4118 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5149 0.8893 30 1 -0.3633 0.5128 -0.8907 31 1 2.2490 -1.6319 -1.1524 32 1 3.6482 -1.1217 -3.3983 33 1 1.9762 -1.5509 -3.8324 34 1 3.4101 1.4693 -8.6846 35 1 1.6174 -1.7192 1.3661 36 1 1.9749 1.2066 2.3401 37 1 1.1950 -0.1774 3.2246 38 1 5.0117 -0.8054 6.5784 39 1 3.7299 0.7201 8.2682 40 1 2.6827 -0.7202 8.0839 41 1 2.3756 2.0362 6.8534 42 1 1.1061 0.8722 7.3604 43 1 1.8958 1.1724 4.7111 44 1 1.2836 -0.3750 5.3711 45 1 4.0625 -1.6258 1.2181 46 1 4.0407 0.1623 0.8932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678608022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:00 Heat of formation + Delta-G solvation = -28.198033 kcal Electronic energy + Delta-G solvation = -25995.144174 eV Core-core repulsion = 22205.190411 eV Total energy + Delta-G solvation = -3789.953762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98612 -39.54176 -38.66073 -37.61646 -35.03696 -32.43142 -31.68355 -30.36824 -29.31397 -28.73539 -28.19522 -26.41849 -25.48656 -24.10287 -21.90100 -21.13247 -20.47855 -20.13004 -18.70095 -17.86887 -17.26750 -16.76708 -16.56161 -16.22555 -15.99154 -15.22314 -15.03744 -14.80553 -14.49947 -14.21232 -13.91084 -13.67901 -13.36509 -13.22040 -13.10225 -12.97799 -12.80631 -12.57885 -12.45408 -12.33338 -12.12004 -12.00349 -11.86678 -11.72125 -11.55995 -11.14893 -11.04753 -11.03829 -11.01422 -10.76581 -10.13655 -9.82669 -9.44868 -9.41427 -9.07117 -9.01411 -8.92416 -8.25018 -6.50554 -6.21946 -3.92614 0.99724 2.44266 2.94447 2.99287 3.06318 3.23561 3.26817 3.29649 3.60680 3.86378 4.05547 4.08850 4.20353 4.37428 4.39301 4.50541 4.62418 4.79320 4.81085 4.94238 4.99107 5.10435 5.13231 5.13821 5.16971 5.22374 5.24469 5.26589 5.30910 5.34862 5.43446 5.50492 5.52294 5.64855 5.67366 5.74267 5.87766 5.95429 5.95866 6.09783 6.12802 6.14888 6.59945 7.34120 7.59034 7.67107 7.86704 8.34703 8.58284 9.23418 10.85371 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.001834 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.167474 B =15262.719294 C =15856.923290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.132 4.132 18 C 0.111 3.889 19 N -0.640 5.640 20 C 0.587 3.413 21 O -0.543 6.543 22 C -0.190 4.190 23 C -0.075 4.075 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.091 4.091 27 C 0.115 3.885 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -3.968 30.090 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.152 4.152 18 C -0.012 4.012 19 N -0.375 5.375 20 C 0.379 3.621 21 O -0.421 6.421 22 C -0.193 4.193 23 C -0.094 4.094 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.128 4.128 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.705 -2.127 30.010 30.622 hybrid contribution 0.900 -2.572 -0.841 2.852 sum -4.805 -4.699 29.170 29.934 Atomic orbital electron populations 1.22173 0.94905 1.02243 1.02838 1.20824 0.94349 0.97279 0.82757 0.88991 1.46044 1.69499 1.13981 1.09383 1.20296 0.76708 0.87201 0.83709 1.90700 1.48249 1.15740 1.84361 1.23542 1.03707 1.04886 0.98380 1.85377 1.86303 1.12857 0.98784 1.22829 1.51117 0.98130 0.96396 0.90976 1.24986 0.95071 0.95537 0.97942 1.70007 1.45468 1.13202 1.21614 0.86230 0.79333 0.80019 0.79960 1.19944 1.20808 1.19941 1.23511 0.96216 1.00983 0.94456 1.23404 0.84529 0.99002 0.94313 1.49877 1.19023 1.62556 1.06045 1.17656 0.83857 0.77965 0.82669 1.90811 1.19294 1.45180 1.86851 1.21751 0.98354 1.06201 0.92967 1.24078 0.98576 0.93319 0.93442 1.21491 0.96290 0.99728 0.96920 1.22450 0.99220 0.99606 0.94920 1.21382 0.93915 0.99669 0.97822 1.23215 0.95776 1.02734 0.78989 0.92411 0.91820 0.91384 0.76806 0.89210 0.89229 0.92130 0.87331 0.88951 0.89257 0.84455 0.90090 0.89600 0.90721 0.90390 0.90554 0.90294 0.89690 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.44 37.15 0.35 -1.08 16 2 C 0.15 1.45 2.29 -67.93 -0.16 1.30 16 3 H 0.09 1.04 7.48 -51.93 -0.39 0.65 16 4 N -0.73 -8.53 4.94 -53.81 -0.27 -8.80 16 5 C 0.53 9.24 7.81 -10.99 -0.09 9.16 16 6 O -0.52 -10.98 15.52 5.56 0.09 -10.90 16 7 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 13 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.13 -0.92 3.35 -89.69 -0.30 -1.22 16 18 C 0.11 0.70 6.19 -2.84 -0.02 0.68 16 19 N -0.64 -6.17 3.61 -179.55 -0.65 -6.82 16 20 C 0.59 7.00 8.03 -12.66 -0.10 6.90 16 21 O -0.54 -8.67 17.49 5.27 0.09 -8.57 16 22 C -0.19 -1.67 6.09 -102.73 -0.63 -2.30 16 23 C -0.07 -0.57 10.43 -36.00 -0.38 -0.95 16 24 C -0.11 -0.52 6.80 -26.85 -0.18 -0.70 16 25 C -0.12 -0.55 7.16 -25.08 -0.18 -0.73 16 26 C -0.09 -0.52 4.89 -26.86 -0.13 -0.65 16 27 C 0.11 1.06 8.28 -2.96 -0.02 1.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 32 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 33 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.09 0.39 6.56 -51.93 -0.34 0.05 16 38 H 0.14 1.11 8.03 -52.49 -0.42 0.69 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.40 6.63 -51.93 -0.34 0.06 16 44 H 0.08 0.38 7.77 -51.93 -0.40 -0.02 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -36.96 394.98 -9.97 -46.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.28 Total: -0.81 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.41 Total: -4.20 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.18 Total: -40.91 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.18 Total: -19.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.96 -9.97 -46.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678608022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.736 kcal (2) G-P(sol) polarization free energy of solvation -36.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds