Wall clock time and date at job start Tue Mar 31 2020 20:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47899 * 2 1 4 4 N 1.46504 * 109.47740 * 239.99379 * 2 1 3 5 5 C 1.34775 * 119.99625 * 84.99935 * 4 2 1 6 6 O 1.21276 * 120.00236 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99600 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47218 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00212 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99847 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00073 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46615 * 60.00535 * 13 11 9 15 15 H 1.48503 * 109.47083 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47192 * 300.00231 * 13 11 9 17 17 C 1.53006 * 109.46779 * 119.99407 * 2 1 3 18 18 C 1.53946 * 113.74547 * 281.82341 * 17 2 1 19 19 N 1.47807 * 86.03850 * 222.08328 * 18 17 2 20 20 C 1.34775 * 134.45842 * 204.64636 * 19 18 17 21 21 O 1.21609 * 120.00457 * 179.86336 * 20 19 18 22 22 C 1.47105 * 119.99766 * 359.86565 * 20 19 18 23 23 C 1.32609 * 124.61885 * 179.70109 * 22 20 19 24 24 C 1.51120 * 110.75729 * 179.83866 * 23 22 20 25 25 C 1.54576 * 104.89918 * 343.80944 * 24 23 22 26 26 C 1.51106 * 124.61916 * 359.97438 * 22 20 19 27 27 C 1.47582 * 91.05355 * 24.54675 * 19 18 17 28 28 H 1.09004 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47789 * 300.07368 * 1 2 3 30 30 H 1.09008 * 109.46635 * 60.06801 * 1 2 3 31 31 H 0.97002 * 120.00078 * 265.00894 * 4 2 1 32 32 H 1.09005 * 109.47414 * 300.00476 * 7 5 4 33 33 H 1.09004 * 109.47433 * 60.00621 * 7 5 4 34 34 H 0.97002 * 119.99733 * 179.97438 * 12 11 9 35 35 H 1.09001 * 112.94238 * 53.41783 * 17 2 1 36 36 H 1.08994 * 113.76534 * 336.35271 * 18 17 2 37 37 H 1.09002 * 113.76688 * 107.73937 * 18 17 2 38 38 H 1.07994 * 124.62144 * 0.02562 * 23 22 20 39 39 H 1.08997 * 110.51759 * 224.84876 * 24 23 22 40 40 H 1.09005 * 110.14548 * 102.57121 * 24 23 22 41 41 H 1.09000 * 110.97852 * 266.70609 * 25 24 23 42 42 H 1.08997 * 110.97996 * 142.91172 * 25 24 23 43 43 H 1.08998 * 110.36958 * 315.44465 * 26 22 20 44 44 H 1.09001 * 110.36668 * 77.76230 * 26 22 20 45 45 H 1.08996 * 113.77495 * 221.15489 * 27 19 18 46 46 H 1.09006 * 113.87062 * 89.76568 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7291 -3.5875 8 16 2.7109 0.4340 -4.9730 9 6 3.3141 -0.6313 -6.2402 10 1 3.5227 -1.6679 -6.0203 11 6 3.5203 -0.1385 -7.5213 12 7 3.2657 1.1248 -7.7894 13 14 4.1605 -1.2678 -8.8646 14 1 3.2099 -2.3915 -9.0612 15 1 4.2939 -0.5042 -10.1313 16 1 5.4871 -1.8050 -8.4690 17 6 2.0398 -0.7212 1.2494 18 6 1.9742 0.1331 2.5284 19 7 3.3095 -0.4177 2.8419 20 6 4.0079 -0.6112 3.9783 21 8 5.1195 -1.1022 3.9328 22 6 3.4253 -0.2283 5.2737 23 6 4.0271 -0.3822 6.4453 24 6 3.1491 0.1193 7.5683 25 6 2.0752 0.9887 6.8753 26 6 2.0574 0.3886 5.4511 27 6 3.5700 -0.6730 1.4118 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5149 0.8893 30 1 -0.3633 0.5128 -0.8907 31 1 2.2490 -1.6319 -1.1524 32 1 3.6482 -1.1217 -3.3983 33 1 1.9762 -1.5509 -3.8324 34 1 3.4101 1.4693 -8.6846 35 1 1.6174 -1.7192 1.3661 36 1 1.9749 1.2066 2.3401 37 1 1.1950 -0.1774 3.2246 38 1 5.0117 -0.8054 6.5784 39 1 3.7299 0.7201 8.2682 40 1 2.6827 -0.7202 8.0839 41 1 2.3756 2.0362 6.8534 42 1 1.1061 0.8722 7.3604 43 1 1.8958 1.1724 4.7111 44 1 1.2836 -0.3750 5.3711 45 1 4.0625 -1.6258 1.2181 46 1 4.0407 0.1623 0.8932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678608022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:59 Heat of formation + Delta-G solvation = -53.708655 kcal Electronic energy + Delta-G solvation = -25996.250397 eV Core-core repulsion = 22205.190411 eV Total energy + Delta-G solvation = -3791.059986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75834 -40.63082 -39.49222 -38.40119 -36.12326 -34.57748 -32.80550 -31.11809 -30.04408 -29.73463 -28.83974 -27.65677 -27.05518 -24.90677 -22.60747 -21.67397 -21.58299 -20.96234 -19.78610 -19.36203 -18.02504 -17.81955 -17.58924 -17.19763 -16.87323 -16.60877 -16.38587 -16.06384 -15.80974 -15.31608 -14.88319 -14.66365 -14.53501 -14.34955 -13.92471 -13.82533 -13.62730 -13.48603 -13.21379 -13.16294 -13.11999 -12.90626 -12.86650 -12.71644 -12.61169 -12.53176 -12.14411 -12.06751 -11.86367 -11.72452 -11.65558 -11.12562 -11.05336 -10.82805 -10.26492 -10.11458 -10.05473 -9.67036 -8.64890 -8.34095 -6.11531 0.32116 1.27954 1.43621 1.47225 1.57139 1.66824 1.72426 2.18248 2.25548 2.30395 2.99915 3.22811 3.30941 3.41238 3.61347 3.68107 3.86383 4.01180 4.08058 4.14522 4.20978 4.28793 4.32795 4.37725 4.44256 4.47547 4.54268 4.55079 4.57923 4.62186 4.81786 4.85154 4.85563 4.94824 4.98258 5.04969 5.18757 5.19806 5.35965 5.40002 5.41237 5.42167 5.52044 5.56835 6.20055 6.55171 6.58566 7.01790 7.07328 7.30508 8.74701 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.001834 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.167474 B =15262.719294 C =15856.923290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.073 0.927 4 N -0.710 5.710 5 C 0.538 3.462 6 O -0.563 6.563 7 C -0.132 4.132 8 S -0.150 6.150 9 C -0.548 4.548 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.910 5.910 13 Si 0.996 3.004 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.108 4.108 18 C 0.115 3.885 19 N -0.641 5.641 20 C 0.575 3.425 21 O -0.600 6.600 22 C -0.210 4.210 23 C -0.075 4.075 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.087 4.087 27 C 0.102 3.898 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -5.745 32.035 33.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.091 0.909 4 N -0.363 5.363 5 C 0.323 3.677 6 O -0.441 6.441 7 C -0.283 4.283 8 S 0.077 5.923 9 C -0.696 4.696 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.818 3.182 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.188 1.188 17 C -0.128 4.128 18 C -0.006 4.006 19 N -0.374 5.374 20 C 0.368 3.632 21 O -0.484 6.484 22 C -0.213 4.213 23 C -0.095 4.095 24 C -0.140 4.140 25 C -0.158 4.158 26 C -0.123 4.123 27 C -0.021 4.021 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.252 0.748 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.347 -3.932 31.991 33.059 hybrid contribution 1.417 -2.045 -1.308 2.811 sum -5.930 -5.977 30.683 31.817 Atomic orbital electron populations 1.22134 0.93589 1.03301 1.02607 1.20968 0.95223 0.96457 0.82437 0.90928 1.45808 1.67587 1.14611 1.08327 1.19939 0.76629 0.86532 0.84553 1.90690 1.50628 1.17620 1.85124 1.23399 1.05425 1.03258 0.96268 1.85528 1.86655 1.17295 1.02789 1.23182 1.50992 0.98480 0.96932 0.90008 1.26103 0.95087 0.97177 1.00715 1.70175 1.46804 1.15419 1.22289 0.85033 0.79038 0.77821 0.76288 1.18605 1.20386 1.18849 1.23377 0.94004 1.02031 0.93348 1.23647 0.83516 0.99410 0.94071 1.50001 1.20072 1.61783 1.05547 1.18281 0.83384 0.77294 0.84212 1.90766 1.21793 1.47999 1.87799 1.21877 1.00325 1.07572 0.91544 1.24359 0.98348 0.92220 0.94586 1.21550 0.96052 1.00400 0.96014 1.22482 0.99963 0.99300 0.94065 1.21427 0.92079 1.00002 0.98829 1.23296 0.97542 1.02025 0.79236 0.90667 0.88882 0.94825 0.74816 0.87540 0.87274 0.92017 0.84912 0.88106 0.86142 0.85925 0.89048 0.88117 0.90751 0.88358 0.90038 0.88810 0.90155 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.44 71.98 0.68 -1.68 16 2 C 0.15 2.62 2.29 44.99 0.10 2.72 16 3 H 0.07 1.59 7.48 -2.39 -0.02 1.58 16 4 N -0.71 -15.34 4.94 -442.54 -2.19 -17.53 16 5 C 0.54 18.48 7.81 87.66 0.68 19.16 16 6 O -0.56 -24.58 15.52 -3.02 -0.05 -24.63 16 7 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 8 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 9 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 10 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 11 C 0.01 0.80 5.49 84.86 0.47 1.27 16 12 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 13 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 C -0.11 -1.21 3.35 -10.13 -0.03 -1.24 16 18 C 0.12 1.11 6.19 86.44 0.53 1.64 16 19 N -0.64 -11.67 3.61 -840.23 -3.04 -14.71 16 20 C 0.57 13.77 8.03 86.57 0.69 14.47 16 21 O -0.60 -20.16 17.49 -4.06 -0.07 -20.23 16 22 C -0.21 -3.49 6.09 -18.57 -0.11 -3.61 16 23 C -0.08 -1.11 10.43 24.66 0.26 -0.86 16 24 C -0.10 -0.75 6.80 30.52 0.21 -0.54 16 25 C -0.12 -0.69 7.16 31.66 0.23 -0.46 16 26 C -0.09 -0.73 4.89 30.51 0.15 -0.58 16 27 C 0.10 1.81 8.28 86.49 0.72 2.52 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.42 6.36 8.60 -92.71 -0.80 5.56 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.87 8.03 -2.39 -0.02 0.85 16 37 H 0.12 0.49 6.56 -2.39 -0.02 0.47 16 38 H 0.12 2.09 8.03 -2.91 -0.02 2.07 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.08 0.59 6.63 -2.39 -0.02 0.58 16 44 H 0.09 0.51 7.77 -2.39 -0.02 0.49 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.59 8.10 -2.38 -0.02 1.57 16 Total: -1.00 -86.09 394.98 1.65 -84.44 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.19 Total: 14.41 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.66 Total: -2.41 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -4.94 Total: -87.85 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.12 Total: -44.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -86.09 1.65 -84.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678608022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.728 kcal (2) G-P(sol) polarization free energy of solvation -86.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds