Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46960 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99942 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00296 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00301 * 180.02562 * 8 7 6 11 11 S 1.80992 * 109.47488 * 179.97438 * 10 8 7 12 12 C 1.76208 * 100.00159 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31631 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00146 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47167 * 90.00053 * 16 14 12 18 18 H 1.48504 * 109.46946 * 210.00218 * 16 14 12 19 19 H 1.48504 * 109.46874 * 329.99893 * 16 14 12 20 20 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 21 21 C 1.34777 * 119.99828 * 84.72116 * 20 2 1 22 22 O 1.21613 * 119.99962 * 0.28066 * 21 20 2 23 23 C 1.43199 * 120.00169 * 180.27827 * 21 20 2 24 24 C 4.88627 * 107.51091 * 254.43273 * 2 1 3 25 25 C 6.32545 * 108.00356 * 251.12657 * 2 1 3 26 26 C 1.53004 * 117.49567 * 159.09142 * 25 24 23 27 27 C 1.53005 * 60.00059 * 252.50980 * 26 25 24 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 32 32 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 33 33 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 34 34 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 35 35 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 36 36 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 37 37 H 0.97002 * 120.00258 * 0.02562 * 7 6 5 38 38 H 1.09003 * 109.47155 * 299.99691 * 10 8 7 39 39 H 1.08999 * 109.47108 * 59.99078 * 10 8 7 40 40 H 0.97003 * 120.00310 * 179.97438 * 15 14 12 41 41 H 0.97001 * 120.00384 * 265.00562 * 20 2 1 42 42 H 1.08992 * 115.55194 * 304.79796 * 25 24 23 43 43 H 1.08998 * 117.49853 * 359.97438 * 26 25 24 44 44 H 1.08999 * 117.50261 * 145.02261 * 26 25 24 45 45 H 1.09000 * 117.50008 * 252.51099 * 27 26 25 46 46 H 1.08997 * 117.49665 * 107.48713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5348 -1.2303 2.6252 8 6 6.2078 -1.7953 3.6470 9 8 5.6047 -2.3894 4.5155 10 6 7.7096 -1.6881 3.7111 11 16 8.3129 -2.5407 5.1892 12 6 10.0447 -2.2655 5.0159 13 1 10.4209 -1.7076 4.1712 14 6 10.9252 -2.7647 5.9655 15 7 10.4667 -3.4443 6.9954 16 14 12.7610 -2.4723 5.7822 17 1 13.1314 -1.2071 6.4657 18 1 13.5057 -3.6020 6.3942 19 1 13.1053 -2.3755 4.3409 20 7 2.0184 -0.6906 -1.1962 21 6 2.1417 -0.0196 -2.3585 22 8 1.8525 1.1604 -2.4130 23 6 2.6134 -0.6960 -3.5292 24 6 3.0002 -1.2506 -4.4889 25 6 3.4850 -1.9460 -5.6923 26 6 4.5313 -1.2298 -6.5487 27 6 3.0923 -1.3632 -7.0514 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4259 34 1 3.8532 0.4369 1.3573 35 1 3.6402 -0.8742 3.4508 36 1 3.7865 -2.3844 2.5200 37 1 6.0172 -0.7548 1.9308 38 1 8.1449 -2.1470 2.8234 39 1 7.9973 -0.6376 3.7551 40 1 11.0821 -3.7936 7.6589 41 1 2.2490 -1.6318 -1.1527 42 1 3.5571 -3.0305 -5.6116 43 1 4.8602 -0.2435 -6.2213 44 1 5.2920 -1.8431 -7.0316 45 1 2.9064 -2.0644 -7.8650 46 1 2.4750 -0.4649 -7.0544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679301662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = -41.409328 kcal Electronic energy + Delta-G solvation = -24504.075659 eV Core-core repulsion = 20713.549012 eV Total energy + Delta-G solvation = -3790.526647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03399 -40.57276 -38.53991 -37.89502 -36.09135 -34.58727 -34.16536 -33.26489 -31.70525 -30.38999 -27.71865 -26.83383 -25.99639 -23.49252 -23.32906 -22.67310 -21.98543 -21.52822 -19.88835 -19.79596 -17.84131 -17.75929 -17.52599 -17.11677 -16.87958 -16.79441 -16.25251 -15.97921 -15.80652 -15.77224 -15.29763 -14.77291 -14.74618 -14.39981 -14.05154 -13.84239 -13.56283 -13.33234 -13.16883 -13.14132 -13.00895 -12.88970 -12.64447 -12.55454 -12.46232 -12.37150 -12.33540 -11.93832 -11.75452 -11.68542 -11.53594 -11.14557 -11.07929 -10.95637 -10.79498 -10.28326 -10.23651 -10.09797 -8.66970 -8.34880 -6.13070 0.36788 1.16427 1.27154 1.42358 1.47198 1.57700 1.61453 1.96308 2.23773 2.26215 2.31563 2.99208 3.05789 3.11548 3.31910 3.59219 3.80081 3.90472 3.97324 3.99159 4.00057 4.05522 4.24000 4.29724 4.39946 4.45802 4.49939 4.50859 4.67456 4.71817 4.73769 4.80264 4.89930 4.94420 5.02774 5.06238 5.14527 5.18042 5.25441 5.32312 5.41652 5.43799 5.47729 6.10689 6.19619 6.34255 6.50700 6.99813 7.06408 7.24718 8.74318 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.001714 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.425019 B =16327.615373 C =18507.583096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.121 4.121 6 C 0.119 3.881 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.566 6.566 10 C -0.131 4.131 11 S -0.151 6.151 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.258 1.258 20 N -0.696 5.696 21 C 0.636 3.364 22 O -0.569 6.569 23 C -0.265 4.265 24 C -0.030 4.030 25 C -0.086 4.086 26 C -0.155 4.155 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.416 0.584 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.237 4.575 -27.889 33.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.004 4.004 7 N -0.369 5.369 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.076 5.924 12 C -0.695 4.695 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.182 1.182 20 N -0.347 5.347 21 C 0.424 3.576 22 O -0.450 6.450 23 C -0.268 4.268 24 C -0.032 4.032 25 C -0.104 4.104 26 C -0.192 4.192 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.253 0.747 42 H 0.178 0.822 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.450 4.344 -26.291 32.991 hybrid contribution 1.910 0.592 -0.811 2.158 sum -17.540 4.936 -27.103 32.658 Atomic orbital electron populations 1.22157 0.94183 1.03076 1.02562 1.21108 0.94686 0.97120 0.83072 0.90335 1.21785 0.94078 1.02543 0.97022 1.21738 0.96535 1.01273 0.96329 1.21444 0.78705 1.01036 0.99204 1.45802 1.08299 1.56691 1.26091 1.20053 0.88867 0.77879 0.81431 1.90689 1.70445 1.43357 1.39998 1.23385 0.94932 1.05845 1.04057 1.85556 1.05853 1.71767 1.29235 1.23209 0.91701 1.41269 1.13345 0.89945 1.26126 1.05215 0.93915 0.93878 1.70182 1.37418 1.34939 1.12172 0.84954 0.75765 0.78130 0.79133 1.19354 1.20239 1.18198 1.45910 1.65666 1.14746 1.08349 1.14777 0.76741 0.84714 0.81414 1.90834 1.51976 1.16729 1.85479 1.20701 1.06662 1.01754 0.97703 1.22118 0.91962 0.95201 0.93957 1.19339 1.06725 0.99455 0.84866 1.23225 0.93179 1.02113 1.00699 1.23229 0.98007 1.03376 0.94381 0.91072 0.89839 0.94003 0.88422 0.89306 0.90495 0.90698 0.92264 0.91992 0.74844 0.87249 0.87349 0.91976 0.74692 0.82224 0.89182 0.85061 0.84919 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 71.98 0.68 -1.14 16 2 C 0.14 1.74 2.57 44.99 0.12 1.85 16 3 H 0.08 1.25 7.58 -2.39 -0.02 1.23 16 4 C -0.12 -1.04 4.75 30.60 0.15 -0.89 16 5 C -0.12 -1.44 5.22 30.60 0.16 -1.28 16 6 C 0.12 2.33 5.67 86.38 0.49 2.82 16 7 N -0.72 -17.20 5.56 -463.06 -2.57 -19.77 16 8 C 0.53 19.36 7.85 87.66 0.69 20.05 16 9 O -0.57 -26.01 15.86 -3.03 -0.05 -26.06 16 10 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 11 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 12 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 13 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 14 C 0.01 0.77 5.49 84.86 0.47 1.23 16 15 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 16 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 N -0.70 -9.20 4.52 -450.12 -2.04 -11.24 16 21 C 0.64 13.16 7.61 85.49 0.65 13.82 16 22 O -0.57 -16.26 16.75 -4.07 -0.07 -16.32 16 23 C -0.27 -5.09 13.61 30.02 0.41 -4.68 16 24 C -0.03 -0.47 13.47 31.13 0.42 -0.05 16 25 C -0.09 -0.73 6.22 -12.60 -0.08 -0.81 16 26 C -0.16 -1.02 10.21 30.60 0.31 -0.71 16 27 C -0.15 -0.93 10.21 30.60 0.31 -0.62 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.84 7.75 -2.39 -0.02 0.82 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.41 7.29 8.47 -92.71 -0.79 6.51 16 38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.42 3.57 8.57 -92.71 -0.79 2.77 16 42 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -84.54 416.00 1.70 -82.84 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.58 Total: 15.98 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.86 Total: -5.77 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.32 Total: -86.63 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.12 Total: -42.38 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -84.54 1.70 -82.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679301662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.427 kcal (2) G-P(sol) polarization free energy of solvation -84.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds