Wall clock time and date at job start Tue Mar 31 2020 20:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21512 * 119.99405 * 359.97438 * 7 6 5 9 9 C 1.48149 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.39906 * 120.91040 * 359.71869 * 9 7 6 11 11 C 1.38037 * 119.06291 * 179.73031 * 10 9 7 12 12 N 1.31884 * 120.94054 * 0.55605 * 11 10 9 13 13 C 1.31963 * 122.00880 * 359.71670 * 12 11 10 14 14 F 1.35092 * 119.58505 * 180.02562 * 13 12 11 15 15 C 1.38528 * 120.82944 * 359.97438 * 13 12 11 16 16 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 17 17 C 1.46898 * 110.99888 * 275.00077 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 30 30 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 31 31 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 33 33 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 34 34 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 35 35 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 36 36 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 37 37 H 1.07995 * 120.46076 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.52902 * 180.29500 * 11 10 9 39 39 H 1.07997 * 120.51535 * 179.97438 * 15 13 12 40 40 H 1.00902 * 110.99923 * 38.96018 * 16 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 44 44 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1599 -0.7993 -2.0223 9 6 5.8679 -2.0378 -3.9851 10 6 4.9805 -2.6711 -4.8619 11 6 5.4816 -3.3057 -5.9807 12 7 6.7778 -3.3300 -6.2229 13 6 7.6504 -2.7508 -5.4202 14 9 8.9674 -2.8054 -5.7159 15 6 7.2328 -2.0865 -4.2785 16 7 2.0197 -0.6925 1.1995 17 6 2.0824 0.2225 2.3469 18 6 2.5885 -0.5217 3.5557 19 8 2.8688 -1.6986 3.4698 20 7 2.7296 0.1206 4.7321 21 6 3.1895 -0.5565 5.8320 22 1 3.4391 -1.6045 5.7555 23 6 3.3355 0.1058 7.0447 24 7 3.0323 1.3811 7.1375 25 14 3.9628 -0.8166 8.5431 26 1 4.2300 -2.2309 8.1777 27 1 5.2169 -0.1838 9.0248 28 1 2.9395 -0.7685 9.6182 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4370 -1.3573 35 1 3.9994 -1.0728 -0.4259 36 1 3.4259 -1.7349 -3.1112 37 1 3.9181 -2.6601 -4.6682 38 1 4.8029 -3.7928 -6.6651 39 1 7.9513 -1.6145 -3.6249 40 1 1.4496 -1.4980 1.4100 41 1 2.7588 1.0461 2.1183 42 1 1.0871 0.6162 2.5526 43 1 2.5051 1.0618 4.8009 44 1 3.1346 1.8436 7.9841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690833556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:18 Heat of formation + Delta-G solvation = -79.506898 kcal Electronic energy + Delta-G solvation = -27507.945840 eV Core-core repulsion = 23181.846734 eV Total energy + Delta-G solvation = -4326.099106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.45392 -40.99907 -39.40695 -38.49218 -37.16761 -35.11075 -33.91742 -33.41420 -31.75346 -31.35289 -31.05479 -29.02450 -26.36920 -25.61115 -24.15912 -24.02636 -23.01505 -21.32773 -20.67491 -19.31645 -18.89470 -17.89001 -17.84181 -17.00432 -16.56686 -16.35786 -16.12212 -15.92843 -15.79252 -15.33309 -14.92155 -14.79387 -14.56841 -14.27173 -14.04396 -13.89386 -13.74363 -13.70416 -13.31611 -13.10918 -12.86116 -12.66767 -12.20306 -11.99822 -11.61004 -11.58169 -11.43406 -11.30864 -11.05863 -10.95629 -10.68629 -10.56358 -10.34006 -10.22199 -10.13567 -9.61867 -9.51783 -9.31992 -8.48150 -8.07331 -7.95700 -6.41620 -3.82305 0.06011 0.32703 2.42139 2.61616 3.04523 3.16726 3.18755 3.27352 3.34664 3.90887 3.97544 4.01333 4.07388 4.21017 4.30189 4.32572 4.60356 4.85874 4.88075 5.01475 5.05130 5.11333 5.15201 5.24272 5.25560 5.32154 5.37563 5.46134 5.61883 5.71047 5.77287 5.92083 5.96110 6.01252 6.03888 6.10365 6.19878 6.27391 7.00938 7.10009 7.18646 7.55727 7.62355 7.80964 8.06770 8.61270 9.18289 9.54598 10.05824 10.76163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.001880 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.638317 B =14887.872120 C =16402.816736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.120 3.880 6 N -0.718 5.718 7 C 0.553 3.447 8 O -0.516 6.516 9 C -0.054 4.054 10 C -0.156 4.156 11 C 0.136 3.864 12 N -0.502 5.502 13 C 0.308 3.692 14 F -0.106 7.106 15 C -0.138 4.138 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.398 0.602 37 H 0.149 0.851 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.350 0.650 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -3.018 -26.556 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.002 4.002 6 N -0.370 5.370 7 C 0.337 3.663 8 O -0.391 6.391 9 C -0.065 4.065 10 C -0.176 4.176 11 C -0.021 4.021 12 N -0.217 5.217 13 C 0.155 3.845 14 F -0.085 7.085 15 C -0.160 4.160 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.233 0.767 37 H 0.167 0.833 38 H 0.192 0.808 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.242 -3.616 -26.743 27.015 hybrid contribution -1.168 0.540 1.421 1.917 sum -2.410 -3.076 -25.322 25.622 Atomic orbital electron populations 1.22513 0.97074 1.02315 1.02281 1.21501 0.92498 0.98184 0.90501 0.90134 1.21760 0.94210 1.01877 0.97571 1.21515 0.94169 0.97370 0.87143 1.45939 1.06666 1.56716 1.27639 1.17989 0.82929 0.80612 0.84729 1.90860 1.55223 1.44671 1.48388 1.20326 0.93388 0.97314 0.95471 1.22400 1.01334 0.98500 0.95406 1.22533 0.89440 0.94865 0.95214 1.66907 1.04261 1.18907 1.31621 1.17996 0.79599 0.95619 0.91289 1.91663 1.29617 1.94129 1.93135 1.22002 0.96900 0.99979 0.97119 1.60208 1.57544 1.09149 1.02642 1.21700 0.99895 0.95733 0.90895 1.19819 0.85156 0.88242 0.84184 1.90524 1.55324 1.16300 1.84605 1.41876 1.57758 1.12460 1.07990 1.19750 1.39831 0.96450 0.86735 0.87882 1.25265 0.97683 0.95788 0.99283 1.69623 1.48772 1.08836 1.27091 0.85801 0.78252 0.79650 0.80652 1.19220 1.20718 1.20804 0.92276 0.92209 0.92278 0.90986 0.91380 0.91483 0.88778 0.76729 0.83325 0.80766 0.81953 0.82986 0.89598 0.93830 0.77482 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16 2 C 0.08 0.85 2.59 -67.71 -0.18 0.68 16 3 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 4 C -0.12 -0.93 5.01 -26.73 -0.13 -1.06 16 5 C 0.12 1.26 5.56 -4.04 -0.02 1.24 16 6 N -0.72 -6.07 5.51 -61.15 -0.34 -6.41 16 7 C 0.55 6.09 7.80 -12.19 -0.10 6.00 16 8 O -0.52 -8.04 16.44 5.36 0.09 -7.95 16 9 C -0.05 -0.46 5.91 -104.66 -0.62 -1.08 16 10 C -0.16 -0.82 9.61 -39.03 -0.38 -1.20 16 11 C 0.14 0.77 11.17 -17.60 -0.20 0.58 16 12 N -0.50 -4.56 10.35 -13.65 -0.14 -4.70 16 13 C 0.31 2.99 8.41 -17.39 -0.15 2.84 16 14 F -0.11 -1.10 17.29 2.25 0.04 -1.06 16 15 C -0.14 -1.29 9.66 -38.93 -0.38 -1.67 16 16 N -0.66 -9.61 5.33 -107.99 -0.58 -10.19 16 17 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 18 C 0.44 10.25 7.82 -10.98 -0.09 10.17 16 19 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.31 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.35 7.75 -51.93 -0.40 0.94 16 36 H 0.40 1.90 6.61 -40.82 -0.27 1.63 16 37 H 0.15 0.26 6.53 -52.49 -0.34 -0.08 16 38 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.16 1.53 7.74 -52.49 -0.41 1.12 16 40 H 0.35 5.32 8.17 -39.29 -0.32 4.99 16 41 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 42 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 43 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -35.09 383.42 -7.28 -42.37 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.71 Total: 11.74 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.15 Total: 8.04 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.39 Total: -59.48 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.18 Total: -23.55 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.09 -7.28 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690833556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.135 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds