Wall clock time and date at job start Tue Mar 31 2020 20:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21512 * 119.99405 * 359.97438 * 7 6 5 9 9 C 1.48149 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.39906 * 120.91040 * 359.71869 * 9 7 6 11 11 C 1.38037 * 119.06291 * 179.73031 * 10 9 7 12 12 N 1.31884 * 120.94054 * 0.55605 * 11 10 9 13 13 C 1.31963 * 122.00880 * 359.71670 * 12 11 10 14 14 F 1.35092 * 119.58505 * 180.02562 * 13 12 11 15 15 C 1.38528 * 120.82944 * 359.97438 * 13 12 11 16 16 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 17 17 C 1.46898 * 110.99888 * 275.00077 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 30 30 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 31 31 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 33 33 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 34 34 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 35 35 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 36 36 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 37 37 H 1.07995 * 120.46076 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.52902 * 180.29500 * 11 10 9 39 39 H 1.07997 * 120.51535 * 179.97438 * 15 13 12 40 40 H 1.00902 * 110.99923 * 38.96018 * 16 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 44 44 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1599 -0.7993 -2.0223 9 6 5.8679 -2.0378 -3.9851 10 6 4.9805 -2.6711 -4.8619 11 6 5.4816 -3.3057 -5.9807 12 7 6.7778 -3.3300 -6.2229 13 6 7.6504 -2.7508 -5.4202 14 9 8.9674 -2.8054 -5.7159 15 6 7.2328 -2.0865 -4.2785 16 7 2.0197 -0.6925 1.1995 17 6 2.0824 0.2225 2.3469 18 6 2.5885 -0.5217 3.5557 19 8 2.8688 -1.6986 3.4698 20 7 2.7296 0.1206 4.7321 21 6 3.1895 -0.5565 5.8320 22 1 3.4391 -1.6045 5.7555 23 6 3.3355 0.1058 7.0447 24 7 3.0323 1.3811 7.1375 25 14 3.9628 -0.8166 8.5431 26 1 4.2300 -2.2309 8.1777 27 1 5.2169 -0.1838 9.0248 28 1 2.9395 -0.7685 9.6182 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4370 -1.3573 35 1 3.9994 -1.0728 -0.4259 36 1 3.4259 -1.7349 -3.1112 37 1 3.9181 -2.6601 -4.6682 38 1 4.8029 -3.7928 -6.6651 39 1 7.9513 -1.6145 -3.6249 40 1 1.4496 -1.4980 1.4100 41 1 2.7588 1.0461 2.1183 42 1 1.0871 0.6162 2.5526 43 1 2.5051 1.0618 4.8009 44 1 3.1346 1.8436 7.9841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690833556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:17 Heat of formation + Delta-G solvation = -107.921296 kcal Electronic energy + Delta-G solvation = -27509.177981 eV Core-core repulsion = 23181.846734 eV Total energy + Delta-G solvation = -4327.331247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.18018 -41.69756 -40.28767 -40.09631 -38.30437 -36.17106 -35.82552 -34.12358 -33.31192 -32.57783 -31.95455 -29.82869 -27.94693 -26.38393 -25.67945 -24.73621 -23.82911 -22.16088 -21.52084 -21.07075 -19.93889 -19.64919 -18.51580 -17.75477 -17.62129 -17.28636 -17.07311 -16.85842 -16.71690 -16.65668 -16.34661 -16.05488 -15.62700 -15.35951 -15.23436 -15.03734 -14.66576 -14.57414 -14.32597 -14.09498 -14.03877 -13.54367 -13.50867 -13.25552 -13.08785 -12.84253 -12.64784 -12.42131 -12.25877 -12.17474 -12.10224 -11.71879 -11.52317 -11.51808 -11.26381 -10.84021 -10.34306 -10.20942 -10.15697 -10.01837 -9.22671 -8.47731 -5.96250 -0.59170 -0.24914 1.35412 1.40514 1.54716 1.65289 1.85688 2.05567 2.28351 2.43788 2.54581 2.96767 3.19787 3.34098 3.46629 3.57108 3.71359 3.72608 3.89356 4.13420 4.24659 4.31620 4.35224 4.46199 4.47624 4.51862 4.58184 4.63544 4.65083 4.78095 4.80304 4.94050 5.04470 5.22096 5.23267 5.33747 5.38305 5.40293 5.42574 5.92567 6.15993 6.39312 6.45613 6.49931 6.59651 7.05917 7.12219 7.56301 8.11708 8.69887 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.001880 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.638317 B =14887.872120 C =16402.816736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.103 4.103 5 C 0.125 3.875 6 N -0.697 5.697 7 C 0.550 3.450 8 O -0.574 6.574 9 C -0.067 4.067 10 C -0.128 4.128 11 C 0.143 3.857 12 N -0.520 5.520 13 C 0.289 3.711 14 F -0.119 7.119 15 C -0.151 4.151 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.015 4.015 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.420 0.580 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.148 0.852 40 H 0.345 0.655 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -3.222 -28.527 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.101 0.899 4 C -0.141 4.141 5 C 0.001 3.999 6 N -0.349 5.349 7 C 0.336 3.664 8 O -0.454 6.454 9 C -0.078 4.078 10 C -0.148 4.148 11 C -0.014 4.014 12 N -0.236 5.236 13 C 0.137 3.863 14 F -0.098 7.098 15 C -0.174 4.174 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.259 0.741 37 H 0.211 0.789 38 H 0.237 0.763 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.971 -3.805 -28.759 29.280 hybrid contribution -0.413 0.578 1.943 2.069 sum -4.384 -3.227 -26.816 27.363 Atomic orbital electron populations 1.22431 0.95345 1.02737 1.02960 1.21661 0.93831 0.98135 0.89204 0.89918 1.21714 0.91894 1.02582 0.97925 1.21328 0.95891 0.96456 0.86202 1.45726 1.06240 1.55811 1.27158 1.18398 0.83214 0.79911 0.84842 1.90832 1.56759 1.47312 1.50493 1.20201 0.93535 0.98584 0.95490 1.22850 1.02844 0.95532 0.93572 1.23361 0.88642 0.93762 0.95626 1.66975 1.05711 1.19109 1.31785 1.18028 0.79495 0.96897 0.91881 1.91619 1.30557 1.94369 1.93268 1.21921 0.97523 1.00682 0.97236 1.60221 1.58661 1.09132 1.03039 1.21525 1.00890 0.95347 0.88818 1.20992 0.83304 0.88046 0.85216 1.90488 1.56629 1.18413 1.85470 1.41960 1.58397 1.12611 1.08297 1.19686 1.42052 0.95898 0.88574 0.90451 1.26041 0.97301 0.96657 1.01420 1.69679 1.48741 1.09632 1.28085 0.84878 0.78182 0.78001 0.77316 1.19880 1.19730 1.19397 0.93444 0.89667 0.91997 0.90195 0.87517 0.92414 0.93181 0.74113 0.78882 0.76350 0.83446 0.83586 0.88380 0.91476 0.77007 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.16 71.98 0.66 -1.81 16 2 C 0.08 1.45 2.59 44.92 0.12 1.57 16 3 H 0.08 1.46 7.80 -2.39 -0.02 1.45 16 4 C -0.10 -1.32 5.01 30.60 0.15 -1.17 16 5 C 0.12 2.48 5.56 86.38 0.48 2.96 16 6 N -0.70 -10.43 5.51 -465.68 -2.57 -13.00 16 7 C 0.55 12.05 7.80 86.88 0.68 12.73 16 8 O -0.57 -19.03 16.44 -3.75 -0.06 -19.09 16 9 C -0.07 -1.09 5.91 -19.89 -0.12 -1.21 16 10 C -0.13 -0.88 9.61 22.63 0.22 -0.66 16 11 C 0.14 1.10 11.17 84.64 0.95 2.05 16 12 N -0.52 -8.71 10.35 -197.08 -2.04 -10.75 16 13 C 0.29 5.75 8.41 84.74 0.71 6.46 16 14 F -0.12 -2.63 17.29 44.97 0.78 -1.85 16 15 C -0.15 -3.00 9.66 22.69 0.22 -2.78 16 16 N -0.68 -19.17 5.33 -495.56 -2.64 -21.81 16 17 C 0.07 2.20 5.97 85.56 0.51 2.71 16 18 C 0.44 20.81 7.82 87.66 0.69 21.49 16 19 O -0.62 -34.71 15.78 -3.05 -0.05 -34.76 16 20 N -0.58 -29.84 5.29 -306.99 -1.62 -31.46 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H 0.05 0.79 7.45 -2.39 -0.02 0.77 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.48 7.75 -2.39 -0.02 1.46 16 36 H 0.42 2.26 6.61 -92.71 -0.61 1.65 16 37 H 0.19 -0.50 6.53 -2.91 -0.02 -0.52 16 38 H 0.22 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.15 3.23 7.74 -2.91 -0.02 3.20 16 40 H 0.34 10.29 8.17 -89.69 -0.73 9.56 16 41 H 0.10 3.02 8.05 -2.39 -0.02 3.00 16 42 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 43 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 44 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -82.38 383.42 -0.35 -82.73 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -1.00 Total: 30.57 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.54 Total: 23.66 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -8.59 Total: -126.92 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.11 Total: -53.85 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -82.38 -0.35 -82.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690833556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.188 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds