Wall clock time and date at job start Tue Mar 31 2020 21:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47285 * 2 1 4 4 C 1.46898 * 110.99774 * 76.02801 * 3 2 1 5 5 C 1.53000 * 109.47063 * 199.54586 * 4 3 2 6 6 N 1.46496 * 109.47142 * 174.88721 * 5 4 3 7 7 C 1.34778 * 119.99929 * 180.02562 * 6 5 4 8 8 O 1.21535 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.48006 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.32811 * 119.74786 * 0.02562 * 9 7 6 11 11 C 1.31429 * 121.66579 * 179.97438 * 10 9 7 12 12 C 1.38681 * 120.97717 * 359.97438 * 11 10 9 13 13 C 1.38444 * 119.39925 * 0.26110 * 12 11 10 14 14 C 1.38972 * 118.46313 * 359.50277 * 13 12 11 15 15 F 1.35101 * 120.49867 * 180.24762 * 14 13 12 16 16 C 1.46901 * 111.00023 * 199.98449 * 3 2 1 17 17 C 1.50700 * 109.47343 * 66.04619 * 16 3 2 18 18 O 1.21294 * 119.99605 * 359.97438 * 17 16 3 19 19 N 1.34773 * 120.00058 * 180.02562 * 17 16 3 20 20 C 1.37092 * 120.00222 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00175 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99909 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99922 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47143 * 89.99847 * 24 22 20 26 26 H 1.48503 * 109.46993 * 209.99905 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99866 * 24 22 20 28 28 H 1.08996 * 109.47436 * 174.86973 * 1 2 3 29 29 H 1.09002 * 109.46756 * 294.87310 * 1 2 3 30 30 H 1.08999 * 109.47083 * 54.86564 * 1 2 3 31 31 H 1.09005 * 109.46735 * 240.00512 * 2 1 3 32 32 H 1.08997 * 109.47288 * 120.00267 * 2 1 3 33 33 H 1.08999 * 109.47322 * 79.54698 * 4 3 2 34 34 H 1.09003 * 109.47360 * 319.54342 * 4 3 2 35 35 H 1.09002 * 109.46986 * 54.88573 * 5 4 3 36 36 H 1.08998 * 109.47326 * 294.89024 * 5 4 3 37 37 H 0.96995 * 120.00278 * 0.02562 * 6 5 4 38 38 H 1.08003 * 119.50663 * 180.02562 * 11 10 9 39 39 H 1.07999 * 120.29739 * 179.97438 * 12 11 10 40 40 H 1.07999 * 120.76504 * 179.72189 * 13 12 11 41 41 H 1.09000 * 109.46903 * 186.04603 * 16 3 2 42 42 H 1.08999 * 109.46884 * 306.04624 * 16 3 2 43 43 H 0.97001 * 119.99682 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99986 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9917 1.3309 5 6 1.9279 3.5157 1.2037 6 7 1.6699 4.1227 2.5117 7 6 1.6598 5.4642 2.6420 8 8 1.8642 6.1702 1.6741 9 6 1.3985 6.0775 3.9634 10 7 1.1752 5.3013 5.0176 11 6 0.9397 5.8056 6.2082 12 6 0.9159 7.1774 6.4104 13 6 1.1384 8.0261 5.3395 14 6 1.3900 7.4670 4.0924 15 9 1.6176 8.2567 3.0202 16 6 3.4103 1.4517 -0.4687 17 6 3.4712 1.0500 -1.9199 18 8 2.4560 0.7383 -2.5059 19 7 4.6537 1.0360 -2.5662 20 6 4.7092 0.6701 -3.8862 21 1 3.8052 0.3933 -4.4084 22 6 5.9283 0.6562 -4.5528 23 7 5.9814 0.3059 -5.8183 24 14 7.4918 1.1356 -3.6500 25 1 8.0974 -0.0720 -3.0332 26 1 8.4530 1.7363 -4.6095 27 1 7.1681 2.1235 -2.5897 28 1 -0.3634 -1.0235 -0.0919 29 1 -0.3633 0.4323 0.9324 30 1 -0.3633 0.5914 -0.8404 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.7005 1.6561 1.9689 34 1 0.9319 1.6918 1.7710 35 1 1.1678 3.8437 0.4946 36 1 2.9120 3.8219 0.8488 37 1 1.5064 3.5593 3.2841 38 1 0.7630 5.1417 7.0417 39 1 0.7209 7.5799 7.3934 40 1 1.1204 9.0979 5.4711 41 1 3.7827 2.4701 -0.3577 42 1 4.0258 0.7734 0.1222 43 1 5.4656 1.2850 -2.0974 44 1 6.8325 0.2959 -6.2835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691045186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:02 Heat of formation + Delta-G solvation = -59.629782 kcal Electronic energy + Delta-G solvation = -28304.625080 eV Core-core repulsion = 23979.387910 eV Total energy + Delta-G solvation = -4325.237170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.34065 -40.90601 -39.41157 -38.82208 -37.00041 -34.90012 -33.85284 -33.23891 -31.73060 -31.66020 -30.88308 -29.29302 -26.57006 -25.26081 -24.16591 -23.88034 -22.64529 -21.24215 -20.77555 -19.32310 -18.59370 -18.27352 -18.07938 -17.62558 -16.47458 -16.32564 -15.99830 -15.84265 -15.64060 -15.08022 -14.83669 -14.77005 -14.48263 -14.21984 -14.07752 -13.91737 -13.72942 -13.49410 -13.28458 -13.15498 -12.96616 -12.53520 -12.41491 -11.98298 -11.77965 -11.61294 -11.45668 -11.21459 -10.86135 -10.76029 -10.59402 -10.58194 -10.52561 -10.09212 -9.94119 -9.60756 -9.49242 -9.19134 -8.52733 -8.14592 -8.01601 -6.27682 -3.78771 -0.04945 0.40406 2.32807 2.65502 3.06437 3.09486 3.18014 3.23030 3.43972 3.59281 3.77121 3.95659 4.03398 4.13610 4.20230 4.26327 4.68081 4.70407 4.88281 4.98644 5.05207 5.16265 5.23607 5.25907 5.33141 5.38185 5.50160 5.73769 5.75196 5.79527 5.83068 5.89308 5.91265 6.00768 6.07701 6.21749 6.41759 6.55676 6.94394 7.17468 7.24875 7.32375 7.61884 7.91619 8.18023 8.63744 8.98846 9.46163 9.87020 10.85443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002251 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.063100 B =12435.626023 C =13674.612660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.119 3.881 6 N -0.706 5.706 7 C 0.565 3.435 8 O -0.515 6.515 9 C 0.048 3.952 10 N -0.432 5.432 11 C 0.087 3.913 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.112 3.888 15 F -0.103 7.103 16 C 0.039 3.961 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 11.065 30.562 33.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.237 5.237 4 C -0.084 4.084 5 C -0.004 4.004 6 N -0.358 5.358 7 C 0.349 3.651 8 O -0.389 6.389 9 C -0.091 4.091 10 N -0.143 5.143 11 C -0.073 4.073 12 C -0.140 4.140 13 C -0.145 4.145 14 C 0.089 3.911 15 F -0.081 7.081 16 C -0.093 4.093 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.231 5.231 20 C -0.431 4.431 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.189 0.811 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.202 0.798 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.394 10.681 28.678 32.012 hybrid contribution 1.890 0.798 1.562 2.579 sum -7.503 11.479 30.240 33.204 Atomic orbital electron populations 1.21694 0.95114 1.01213 1.01672 1.22183 0.96185 0.87676 1.01444 1.61433 1.19682 1.19771 1.22769 1.22247 1.01795 0.93398 0.90978 1.21451 1.02923 0.92400 0.83668 1.45693 1.71274 1.06048 1.12765 1.17613 0.78301 0.82858 0.86357 1.90909 1.48198 1.61588 1.38232 1.21434 1.03470 0.89428 0.94762 1.67631 1.08651 1.39049 0.99001 1.22932 0.96312 0.93720 0.94379 1.22339 0.97313 0.94356 0.99993 1.21773 0.99510 1.02474 0.90753 1.18688 0.98846 0.88587 0.84987 1.91655 1.90707 1.72707 1.53003 1.21990 0.89401 1.02031 0.95852 1.19602 0.84229 0.84481 0.87849 1.90552 1.33653 1.51609 1.68009 1.42220 1.07188 1.61801 1.11933 1.19419 0.97260 1.42106 0.84352 0.86248 1.25036 0.97863 0.97667 0.95648 1.69623 1.26522 1.47204 1.08851 0.86683 0.83808 0.79093 0.79897 1.19715 1.20189 1.19440 0.92745 0.93851 0.91311 0.88416 0.95784 0.94147 0.89929 0.89720 0.90988 0.75560 0.81073 0.83038 0.82647 0.89147 0.93218 0.79759 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.96 37.16 0.37 -1.50 16 2 C 0.05 0.80 5.18 -3.82 -0.02 0.78 16 3 N -0.51 -7.97 4.10 -236.07 -0.97 -8.94 16 4 C 0.04 0.52 4.92 -3.83 -0.02 0.50 16 5 C 0.12 1.49 5.70 -4.04 -0.02 1.47 16 6 N -0.71 -7.76 5.54 -61.20 -0.34 -8.10 16 7 C 0.57 7.41 7.81 -12.26 -0.10 7.31 16 8 O -0.51 -8.73 15.32 5.33 0.08 -8.65 16 9 C 0.05 0.51 6.75 -82.95 -0.56 -0.05 16 10 N -0.43 -3.50 9.54 -9.76 -0.09 -3.60 16 11 C 0.09 0.41 11.18 -17.56 -0.20 0.22 16 12 C -0.12 -0.42 10.11 -39.34 -0.40 -0.82 16 13 C -0.12 -0.66 10.16 -39.23 -0.40 -1.06 16 14 C 0.11 1.08 7.32 -38.82 -0.28 0.80 16 15 F -0.10 -1.27 15.55 2.25 0.04 -1.23 16 16 C 0.04 0.65 5.28 -4.98 -0.03 0.62 16 17 C 0.45 10.30 7.29 -10.99 -0.08 10.22 16 18 O -0.56 -14.74 14.12 5.55 0.08 -14.66 16 19 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 20 C -0.30 -8.62 10.16 -14.94 -0.15 -8.78 16 21 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 24 Si 0.88 19.70 27.74 -169.99 -4.71 14.99 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.84 5.85 -51.93 -0.30 1.54 16 32 H 0.02 0.31 7.99 -51.93 -0.42 -0.10 16 33 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 34 H 0.08 0.84 6.58 -51.93 -0.34 0.50 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 37 H 0.41 3.55 7.80 -40.82 -0.32 3.23 16 38 H 0.17 0.25 8.06 -52.48 -0.42 -0.18 16 39 H 0.15 0.01 8.06 -52.49 -0.42 -0.42 16 40 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.09 1.39 6.71 -51.93 -0.35 1.04 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -36.11 373.98 -7.16 -43.27 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.61 Total: 10.11 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.98 Total: 10.74 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.68 Total: -60.20 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.31 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.11 -7.16 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691045186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.364 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds