Wall clock time and date at job start Tue Mar 31 2020 21:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47285 * 2 1 4 4 C 1.46898 * 110.99774 * 76.02801 * 3 2 1 5 5 C 1.53000 * 109.47063 * 199.54586 * 4 3 2 6 6 N 1.46496 * 109.47142 * 174.88721 * 5 4 3 7 7 C 1.34778 * 119.99929 * 180.02562 * 6 5 4 8 8 O 1.21535 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.48006 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.32811 * 119.74786 * 0.02562 * 9 7 6 11 11 C 1.31429 * 121.66579 * 179.97438 * 10 9 7 12 12 C 1.38681 * 120.97717 * 359.97438 * 11 10 9 13 13 C 1.38444 * 119.39925 * 0.26110 * 12 11 10 14 14 C 1.38972 * 118.46313 * 359.50277 * 13 12 11 15 15 F 1.35101 * 120.49867 * 180.24762 * 14 13 12 16 16 C 1.46901 * 111.00023 * 199.98449 * 3 2 1 17 17 C 1.50700 * 109.47343 * 66.04619 * 16 3 2 18 18 O 1.21294 * 119.99605 * 359.97438 * 17 16 3 19 19 N 1.34773 * 120.00058 * 180.02562 * 17 16 3 20 20 C 1.37092 * 120.00222 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00175 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99909 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99922 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47143 * 89.99847 * 24 22 20 26 26 H 1.48503 * 109.46993 * 209.99905 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99866 * 24 22 20 28 28 H 1.08996 * 109.47436 * 174.86973 * 1 2 3 29 29 H 1.09002 * 109.46756 * 294.87310 * 1 2 3 30 30 H 1.08999 * 109.47083 * 54.86564 * 1 2 3 31 31 H 1.09005 * 109.46735 * 240.00512 * 2 1 3 32 32 H 1.08997 * 109.47288 * 120.00267 * 2 1 3 33 33 H 1.08999 * 109.47322 * 79.54698 * 4 3 2 34 34 H 1.09003 * 109.47360 * 319.54342 * 4 3 2 35 35 H 1.09002 * 109.46986 * 54.88573 * 5 4 3 36 36 H 1.08998 * 109.47326 * 294.89024 * 5 4 3 37 37 H 0.96995 * 120.00278 * 0.02562 * 6 5 4 38 38 H 1.08003 * 119.50663 * 180.02562 * 11 10 9 39 39 H 1.07999 * 120.29739 * 179.97438 * 12 11 10 40 40 H 1.07999 * 120.76504 * 179.72189 * 13 12 11 41 41 H 1.09000 * 109.46903 * 186.04603 * 16 3 2 42 42 H 1.08999 * 109.46884 * 306.04624 * 16 3 2 43 43 H 0.97001 * 119.99682 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99986 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9917 1.3309 5 6 1.9279 3.5157 1.2037 6 7 1.6699 4.1227 2.5117 7 6 1.6598 5.4642 2.6420 8 8 1.8642 6.1702 1.6741 9 6 1.3985 6.0775 3.9634 10 7 1.1752 5.3013 5.0176 11 6 0.9397 5.8056 6.2082 12 6 0.9159 7.1774 6.4104 13 6 1.1384 8.0261 5.3395 14 6 1.3900 7.4670 4.0924 15 9 1.6176 8.2567 3.0202 16 6 3.4103 1.4517 -0.4687 17 6 3.4712 1.0500 -1.9199 18 8 2.4560 0.7383 -2.5059 19 7 4.6537 1.0360 -2.5662 20 6 4.7092 0.6701 -3.8862 21 1 3.8052 0.3933 -4.4084 22 6 5.9283 0.6562 -4.5528 23 7 5.9814 0.3059 -5.8183 24 14 7.4918 1.1356 -3.6500 25 1 8.0974 -0.0720 -3.0332 26 1 8.4530 1.7363 -4.6095 27 1 7.1681 2.1235 -2.5897 28 1 -0.3634 -1.0235 -0.0919 29 1 -0.3633 0.4323 0.9324 30 1 -0.3633 0.5914 -0.8404 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.7005 1.6561 1.9689 34 1 0.9319 1.6918 1.7710 35 1 1.1678 3.8437 0.4946 36 1 2.9120 3.8219 0.8488 37 1 1.5064 3.5593 3.2841 38 1 0.7630 5.1417 7.0417 39 1 0.7209 7.5799 7.3934 40 1 1.1204 9.0979 5.4711 41 1 3.7827 2.4701 -0.3577 42 1 4.0258 0.7734 0.1222 43 1 5.4656 1.2850 -2.0974 44 1 6.8325 0.2959 -6.2835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691045186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:02 Heat of formation + Delta-G solvation = -89.985002 kcal Electronic energy + Delta-G solvation = -28305.941381 eV Core-core repulsion = 23979.387910 eV Total energy + Delta-G solvation = -4326.553471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.08069 -41.55676 -40.63524 -40.08201 -38.41003 -36.11874 -35.71936 -33.76799 -33.73147 -32.36213 -31.97129 -30.45457 -27.98516 -26.21076 -25.55541 -24.55108 -23.60736 -22.29466 -21.84916 -21.20391 -20.20258 -19.33020 -18.70523 -18.21391 -17.88249 -17.25216 -17.05957 -16.95265 -16.59474 -16.47455 -16.17308 -15.98513 -15.55796 -15.30922 -15.05922 -14.95146 -14.82958 -14.53144 -14.34867 -14.28833 -14.14257 -13.96308 -13.60158 -13.49219 -13.05905 -12.86655 -12.69853 -12.58080 -12.42088 -12.04969 -11.99263 -11.77611 -11.57461 -11.41036 -11.02465 -10.75621 -10.36185 -10.33055 -10.22044 -10.02888 -9.24467 -8.41190 -6.01314 -0.61186 -0.03198 1.29445 1.33878 1.42912 1.57551 1.79526 1.96605 2.22240 2.63045 2.64238 2.90453 3.04114 3.15056 3.23708 3.60780 3.65671 3.84541 3.88776 4.01319 4.08488 4.24698 4.32780 4.35923 4.41452 4.53721 4.55604 4.59577 4.71903 4.77052 4.81703 4.88750 4.92981 5.02803 5.20281 5.27766 5.42060 5.49143 5.53845 5.90197 6.03486 6.17558 6.28380 6.60148 6.61387 6.89075 7.03322 7.40476 7.97829 8.76493 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002251 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.063100 B =12435.626023 C =13674.612660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.056 3.944 5 C 0.125 3.875 6 N -0.690 5.690 7 C 0.558 3.442 8 O -0.568 6.568 9 C 0.020 3.980 10 N -0.444 5.444 11 C 0.090 3.910 12 C -0.093 4.093 13 C -0.115 4.115 14 C 0.080 3.920 15 F -0.130 7.130 16 C 0.051 3.949 17 C 0.451 3.549 18 O -0.601 6.601 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.056 0.944 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.235 1.235 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.422 0.578 38 H 0.212 0.788 39 H 0.200 0.800 40 H 0.181 0.819 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.388 0.612 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 11.795 36.799 39.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.263 5.263 4 C -0.072 4.072 5 C 0.001 3.999 6 N -0.342 5.342 7 C 0.344 3.656 8 O -0.447 6.447 9 C -0.117 4.117 10 N -0.156 5.156 11 C -0.071 4.071 12 C -0.113 4.113 13 C -0.141 4.141 14 C 0.057 3.943 15 F -0.109 7.109 16 C -0.080 4.080 17 C 0.239 3.761 18 O -0.485 6.485 19 N -0.237 5.237 20 C -0.453 4.453 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.159 1.159 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.261 0.739 38 H 0.229 0.771 39 H 0.217 0.783 40 H 0.198 0.802 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.223 0.777 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.507 11.387 34.964 37.742 hybrid contribution 1.405 0.548 -0.255 1.530 sum -7.101 11.935 34.709 37.384 Atomic orbital electron populations 1.21648 0.94072 1.01647 1.01767 1.22099 0.97084 0.87448 1.00681 1.61318 1.18995 1.20366 1.25633 1.22222 1.03971 0.91825 0.89186 1.21258 1.01312 0.93399 0.83972 1.45517 1.70421 1.05706 1.12584 1.18161 0.77239 0.83058 0.87158 1.90865 1.50756 1.62738 1.40312 1.21017 1.06536 0.89845 0.94295 1.67610 1.09373 1.39045 0.99563 1.23748 0.94134 0.95255 0.93948 1.22901 0.93734 0.93538 1.01116 1.22159 0.98364 1.04186 0.89393 1.19168 1.00802 0.88478 0.85887 1.91577 1.91324 1.73288 1.54675 1.21892 0.91179 1.03646 0.91297 1.20854 0.82983 0.82026 0.90222 1.90538 1.35286 1.52802 1.69855 1.42061 1.08601 1.62571 1.10427 1.18986 0.95752 1.44054 0.86552 0.92588 1.26097 1.02137 0.96791 0.96477 1.69806 1.28114 1.48453 1.11194 0.85385 0.77199 0.79975 0.79103 1.17853 1.20095 1.15879 0.91601 0.91020 0.94444 0.92854 0.92620 0.91294 0.87938 0.92487 0.92186 0.73939 0.77139 0.78314 0.80204 0.87238 0.89739 0.77665 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.96 71.98 0.72 -2.77 16 2 C 0.05 1.59 5.18 86.30 0.45 2.04 16 3 N -0.54 -16.06 4.10 -900.78 -3.70 -19.76 16 4 C 0.06 1.14 4.92 86.30 0.42 1.56 16 5 C 0.12 3.06 5.70 86.38 0.49 3.56 16 6 N -0.69 -14.68 5.54 -465.82 -2.58 -17.26 16 7 C 0.56 15.05 7.81 86.83 0.68 15.73 16 8 O -0.57 -20.57 15.32 -3.83 -0.06 -20.63 16 9 C 0.02 0.41 6.75 41.90 0.28 0.70 16 10 N -0.44 -6.10 9.54 -184.79 -1.76 -7.87 16 11 C 0.09 0.45 11.18 84.86 0.95 1.40 16 12 C -0.09 -0.19 10.11 22.42 0.23 0.04 16 13 C -0.11 -0.96 10.16 22.49 0.23 -0.73 16 14 C 0.08 1.53 7.32 22.76 0.17 1.69 16 15 F -0.13 -3.43 15.55 44.97 0.70 -2.73 16 16 C 0.05 1.63 5.28 85.56 0.45 2.08 16 17 C 0.45 20.98 7.29 87.66 0.64 21.62 16 18 O -0.60 -33.74 14.12 -3.07 -0.04 -33.78 16 19 N -0.59 -28.97 5.09 -306.99 -1.56 -30.53 16 20 C -0.32 -19.46 10.16 84.04 0.85 -18.60 16 21 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.93 -57.62 13.96 21.66 0.30 -57.32 16 24 Si 0.96 40.17 27.74 68.60 1.90 42.07 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 26 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.24 -8.46 6.52 99.48 0.65 -7.81 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.44 6.91 -2.39 -0.02 1.42 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 2.06 5.85 -2.38 -0.01 2.04 16 32 H 0.06 1.28 7.99 -2.39 -0.02 1.26 16 33 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.10 1.72 6.58 -2.39 -0.02 1.71 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.62 6.95 -2.39 -0.02 1.60 16 37 H 0.42 6.47 7.80 -92.71 -0.72 5.74 16 38 H 0.21 -0.69 8.06 -2.91 -0.02 -0.71 16 39 H 0.20 -1.42 8.06 -2.91 -0.02 -1.44 16 40 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.11 3.13 6.71 -2.39 -0.02 3.11 16 42 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 43 H 0.39 15.83 5.76 -92.71 -0.53 15.30 16 44 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -90.70 373.98 -0.03 -90.73 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.25 Total: 29.26 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 7.02 Total: 27.83 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -9.30 Total: -132.74 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -0.10 Total: -54.41 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.70 Total: -2.73 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.90 Total: 42.07 kcal Total: -90.70 -0.03 -90.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691045186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.740 kcal (2) G-P(sol) polarization free energy of solvation -90.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds