Wall clock time and date at job start Tue Mar 31 2020 20:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35786 * 117.00008 * 2 1 4 4 C 1.38017 * 123.47073 * 0.19835 * 3 2 1 5 5 C 1.33619 * 115.07943 * 180.27195 * 4 3 2 6 6 S 1.70568 * 111.14914 * 359.74906 * 5 4 3 7 7 C 1.37264 * 123.46608 * 180.02562 * 3 2 1 8 8 C 1.41730 * 125.48080 * 0.02562 * 7 3 2 9 9 O 1.21769 * 119.99727 * 318.94895 * 8 7 3 10 10 N 1.34773 * 119.99771 * 138.94219 * 8 7 3 11 11 C 1.46920 * 120.63598 * 354.28061 * 10 8 7 12 12 C 1.53184 * 108.77832 * 233.62676 * 11 10 8 13 13 C 1.53040 * 109.31540 * 305.36924 * 12 11 10 14 14 C 1.52998 * 109.46010 * 181.38313 * 13 12 11 15 15 H 1.08993 * 109.47398 * 299.99623 * 14 13 12 16 16 C 1.53007 * 109.47083 * 59.99854 * 14 13 12 17 17 N 1.46499 * 109.47129 * 179.97438 * 14 13 12 18 18 C 1.36937 * 119.99884 * 154.72595 * 17 14 13 19 19 H 1.08000 * 119.99998 * 0.27546 * 18 17 14 20 20 C 1.38812 * 120.00004 * 180.28065 * 18 17 14 21 21 N 1.31618 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00284 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47227 * 89.99559 * 22 20 18 24 24 H 1.48502 * 109.47526 * 209.99935 * 22 20 18 25 25 H 1.48510 * 109.47019 * 329.99997 * 22 20 18 26 26 C 1.53033 * 109.53996 * 61.35960 * 13 12 11 27 27 C 1.46932 * 120.62746 * 174.30299 * 10 8 7 28 28 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47079 * 300.00510 * 1 2 3 30 30 H 1.09004 * 109.46718 * 60.00105 * 1 2 3 31 31 H 1.07996 * 122.46083 * 0.02562 * 4 3 2 32 32 H 1.08000 * 124.42246 * 179.74952 * 5 4 3 33 33 H 1.09000 * 109.58780 * 113.83798 * 11 10 8 34 34 H 1.09005 * 109.70358 * 353.48799 * 11 10 8 35 35 H 1.09000 * 109.50134 * 185.40991 * 12 11 10 36 36 H 1.09008 * 109.52374 * 65.33528 * 12 11 10 37 37 H 1.09007 * 109.45468 * 301.35435 * 13 12 11 38 38 H 1.09002 * 109.46891 * 299.99725 * 16 14 13 39 39 H 1.08995 * 109.47126 * 60.00185 * 16 14 13 40 40 H 1.09004 * 109.47124 * 179.97438 * 16 14 13 41 41 H 0.96995 * 119.99959 * 335.00473 * 17 14 13 42 42 H 0.97004 * 120.00222 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.49929 * 58.59101 * 26 13 12 44 44 H 1.08997 * 109.49858 * 178.68467 * 26 13 12 45 45 H 1.09003 * 109.58417 * 246.15939 * 27 10 8 46 46 H 1.09001 * 109.58628 * 6.44195 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3653 2.4108 0.0040 5 6 2.1391 3.5000 -0.0024 6 16 3.7924 3.0804 -0.0071 7 6 3.4094 1.3644 -0.0005 8 6 4.3568 0.3103 -0.0016 9 8 4.1725 -0.6746 0.6904 10 7 5.4615 0.3979 -0.7687 11 6 5.6379 1.5188 -1.7020 12 6 5.9220 0.9575 -3.0987 13 6 7.1174 0.0046 -3.0277 14 6 7.4257 -0.5314 -4.4272 15 1 6.5570 -1.0662 -4.8110 16 6 7.7585 0.6360 -5.3586 17 7 8.5704 -1.4432 -4.3597 18 6 8.7239 -2.4206 -5.3063 19 1 8.0036 -2.5165 -6.1053 20 6 9.8054 -3.2882 -5.2391 21 7 10.6835 -3.1711 -4.2656 22 14 10.0145 -4.6221 -6.5300 23 1 10.8241 -4.0963 -7.6583 24 1 10.7052 -5.7904 -5.9274 25 1 8.6803 -5.0399 -7.0307 26 6 6.7863 -1.1633 -2.0959 27 6 6.5121 -0.6260 -0.6878 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2867 2.4660 0.0078 32 1 1.7664 4.5137 -0.0044 33 1 6.4766 2.1353 -1.3784 34 1 4.7301 2.1217 -1.7281 35 1 6.1497 1.7768 -3.7807 36 1 5.0467 0.4169 -3.4590 37 1 7.9861 0.5399 -2.6443 38 1 6.9070 1.3147 -5.4089 39 1 8.6272 1.1708 -4.9748 40 1 7.9786 0.2541 -6.3555 41 1 9.2173 -1.3571 -3.6421 42 1 11.4394 -3.7772 -4.2188 43 1 5.9028 -1.6841 -2.4651 44 1 7.6293 -1.8536 -2.0641 45 1 7.4221 -0.1845 -0.2815 46 1 6.1807 -1.4394 -0.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691691713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:57 Heat of formation + Delta-G solvation = -21.807281 kcal Electronic energy + Delta-G solvation = -27565.513191 eV Core-core repulsion = 23775.836553 eV Total energy + Delta-G solvation = -3789.676638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60899 -39.60557 -37.73865 -36.22755 -35.30904 -32.83711 -31.60936 -30.69044 -29.98950 -28.20470 -27.39400 -25.63174 -24.58295 -23.77191 -22.77251 -21.63454 -20.24636 -19.72142 -19.48961 -18.21887 -17.14760 -16.98674 -16.54935 -16.08530 -15.64129 -15.13130 -14.95775 -14.81857 -14.16785 -13.99712 -13.89985 -13.76191 -13.47511 -13.40738 -13.02130 -12.87716 -12.57072 -12.47061 -12.11539 -12.00880 -11.88725 -11.60779 -11.39505 -11.23182 -11.07600 -10.94340 -10.83493 -10.68521 -10.27746 -10.13451 -10.04644 -9.84671 -9.71869 -9.54749 -8.99526 -8.85473 -8.46020 -8.29712 -6.89520 -5.71922 -2.99536 0.29652 1.08883 1.48968 2.11504 2.91317 3.18386 3.38629 3.46413 3.51939 3.53320 4.29893 4.62049 4.64963 4.77491 4.84462 4.86772 4.92662 5.09277 5.16381 5.18599 5.25908 5.35734 5.45686 5.51155 5.57751 5.60625 5.73056 5.81611 5.87460 6.00627 6.02137 6.15958 6.18881 6.26051 6.40277 6.48795 6.54666 6.66599 6.75018 6.91181 6.95908 7.01158 7.17991 7.50474 7.75048 8.27262 8.47164 9.58290 10.16975 10.51749 11.50849 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002643 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.608738 B =10592.712940 C =11035.536277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.281 6.281 3 C 0.177 3.823 4 C -0.208 4.208 5 C -0.215 4.215 6 S 0.246 5.754 7 C -0.318 4.318 8 C 0.596 3.404 9 O -0.528 6.528 10 N -0.606 5.606 11 C 0.098 3.902 12 C -0.126 4.126 13 C -0.089 4.089 14 C 0.178 3.822 15 H 0.044 0.956 16 C -0.165 4.165 17 N -0.722 5.722 18 C -0.233 4.233 19 H 0.068 0.932 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.121 4.121 27 C 0.113 3.887 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 17.601 9.627 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.193 6.193 3 C 0.117 3.883 4 C -0.242 4.242 5 C -0.352 4.352 6 S 0.512 5.488 7 C -0.438 4.438 8 C 0.385 3.615 9 O -0.406 6.406 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.165 4.165 13 C -0.109 4.109 14 C 0.068 3.932 15 H 0.062 0.938 16 C -0.225 4.225 17 N -0.364 5.364 18 C -0.365 4.365 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.735 3.265 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.159 4.159 27 C -0.009 4.009 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.598 17.560 9.865 27.414 hybrid contribution -1.306 -1.208 -0.646 1.892 sum -19.903 16.352 9.219 27.359 Atomic orbital electron populations 1.23165 0.78094 1.04470 1.01258 1.86255 1.21189 1.24404 1.87485 1.18188 0.90089 0.85467 0.94569 1.20012 1.02011 0.90895 1.11277 1.25152 1.00019 1.03702 1.06375 1.83244 1.02758 0.94846 1.67955 1.22657 0.95468 0.98729 1.26937 1.15583 0.80406 0.85411 0.80120 1.90837 1.75355 1.31931 1.42483 1.48056 1.19942 1.26117 1.39867 1.22054 1.01994 0.88517 0.90058 1.21991 0.99345 0.99915 0.95199 1.21383 0.96727 0.95527 0.97244 1.20213 0.91433 0.90262 0.91299 0.93780 1.22494 0.99570 0.99168 1.01317 1.42405 1.26385 1.35275 1.32305 1.19221 1.06525 1.06546 1.04194 0.91380 1.24702 0.97854 0.99860 0.98603 1.69652 1.15013 1.40415 1.33157 0.86236 0.77521 0.81717 0.81008 1.21884 1.21854 1.20855 1.21872 1.02984 0.98234 0.92814 1.21731 0.89114 0.91124 0.98912 0.87841 0.92551 0.92552 0.83411 0.80969 0.91129 0.89913 0.90295 0.91624 0.91367 0.94350 0.93593 0.93083 0.78315 0.93611 0.92019 0.89017 0.91546 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.94 101.05 1.00 1.19 16 2 O -0.28 -3.66 10.05 -20.64 -0.21 -3.86 16 3 C 0.18 2.13 6.68 -40.02 -0.27 1.86 16 4 C -0.21 -1.74 9.17 -41.28 -0.38 -2.12 16 5 C -0.21 -1.49 10.90 29.11 0.32 -1.17 16 6 S 0.25 2.09 19.88 -107.50 -2.14 -0.05 16 7 C -0.32 -4.13 5.23 -38.60 -0.20 -4.33 16 8 C 0.60 9.58 7.26 -14.93 -0.11 9.47 16 9 O -0.53 -10.44 16.09 3.55 0.06 -10.38 16 10 N -0.61 -8.75 2.97 -176.14 -0.52 -9.27 16 11 C 0.10 1.13 5.54 -3.72 -0.02 1.11 16 12 C -0.13 -1.62 5.04 -26.62 -0.13 -1.75 16 13 C -0.09 -1.42 1.79 -90.58 -0.16 -1.58 16 14 C 0.18 3.44 2.47 -67.93 -0.17 3.27 16 15 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 16 C -0.17 -2.90 9.14 37.16 0.34 -2.56 16 17 N -0.72 -17.65 4.40 -53.43 -0.24 -17.89 16 18 C -0.23 -6.44 9.93 -15.06 -0.15 -6.58 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 22 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 26 C -0.12 -2.05 5.22 -26.62 -0.14 -2.19 16 27 C 0.11 1.73 6.44 -3.71 -0.02 1.71 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.32 7.87 -51.93 -0.41 -0.08 16 30 H 0.06 0.32 7.89 -51.93 -0.41 -0.09 16 31 H 0.15 0.85 6.99 -52.49 -0.37 0.48 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.84 4.51 -35.02 -0.16 0.68 16 35 H 0.08 0.89 6.36 -51.93 -0.33 0.56 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.55 6.40 -51.93 -0.33 0.21 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.38 9.94 7.58 -40.82 -0.31 9.63 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.79 7.40 -51.93 -0.38 1.40 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.50 6.99 -51.93 -0.36 1.14 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -34.43 376.99 -8.68 -43.11 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.83 Total: 6.64 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.19 Total: -4.18 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.03 Total: -54.52 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.15 Total: -14.25 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.14 Total: -0.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.43 -8.68 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.305 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds