Wall clock time and date at job start Tue Mar 31 2020 20:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35786 * 117.00008 * 2 1 4 4 C 1.38017 * 123.47073 * 0.19835 * 3 2 1 5 5 C 1.33619 * 115.07943 * 180.27195 * 4 3 2 6 6 S 1.70568 * 111.14914 * 359.74906 * 5 4 3 7 7 C 1.37264 * 123.46608 * 180.02562 * 3 2 1 8 8 C 1.41730 * 125.48080 * 0.02562 * 7 3 2 9 9 O 1.21769 * 119.99727 * 318.94895 * 8 7 3 10 10 N 1.34773 * 119.99771 * 138.94219 * 8 7 3 11 11 C 1.46920 * 120.63598 * 354.28061 * 10 8 7 12 12 C 1.53184 * 108.77832 * 233.62676 * 11 10 8 13 13 C 1.53040 * 109.31540 * 305.36924 * 12 11 10 14 14 C 1.52998 * 109.46010 * 181.38313 * 13 12 11 15 15 H 1.08993 * 109.47398 * 299.99623 * 14 13 12 16 16 C 1.53007 * 109.47083 * 59.99854 * 14 13 12 17 17 N 1.46499 * 109.47129 * 179.97438 * 14 13 12 18 18 C 1.36937 * 119.99884 * 154.72595 * 17 14 13 19 19 H 1.08000 * 119.99998 * 0.27546 * 18 17 14 20 20 C 1.38812 * 120.00004 * 180.28065 * 18 17 14 21 21 N 1.31618 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00284 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47227 * 89.99559 * 22 20 18 24 24 H 1.48502 * 109.47526 * 209.99935 * 22 20 18 25 25 H 1.48510 * 109.47019 * 329.99997 * 22 20 18 26 26 C 1.53033 * 109.53996 * 61.35960 * 13 12 11 27 27 C 1.46932 * 120.62746 * 174.30299 * 10 8 7 28 28 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47079 * 300.00510 * 1 2 3 30 30 H 1.09004 * 109.46718 * 60.00105 * 1 2 3 31 31 H 1.07996 * 122.46083 * 0.02562 * 4 3 2 32 32 H 1.08000 * 124.42246 * 179.74952 * 5 4 3 33 33 H 1.09000 * 109.58780 * 113.83798 * 11 10 8 34 34 H 1.09005 * 109.70358 * 353.48799 * 11 10 8 35 35 H 1.09000 * 109.50134 * 185.40991 * 12 11 10 36 36 H 1.09008 * 109.52374 * 65.33528 * 12 11 10 37 37 H 1.09007 * 109.45468 * 301.35435 * 13 12 11 38 38 H 1.09002 * 109.46891 * 299.99725 * 16 14 13 39 39 H 1.08995 * 109.47126 * 60.00185 * 16 14 13 40 40 H 1.09004 * 109.47124 * 179.97438 * 16 14 13 41 41 H 0.96995 * 119.99959 * 335.00473 * 17 14 13 42 42 H 0.97004 * 120.00222 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.49929 * 58.59101 * 26 13 12 44 44 H 1.08997 * 109.49858 * 178.68467 * 26 13 12 45 45 H 1.09003 * 109.58417 * 246.15939 * 27 10 8 46 46 H 1.09001 * 109.58628 * 6.44195 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3653 2.4108 0.0040 5 6 2.1391 3.5000 -0.0024 6 16 3.7924 3.0804 -0.0071 7 6 3.4094 1.3644 -0.0005 8 6 4.3568 0.3103 -0.0016 9 8 4.1725 -0.6746 0.6904 10 7 5.4615 0.3979 -0.7687 11 6 5.6379 1.5188 -1.7020 12 6 5.9220 0.9575 -3.0987 13 6 7.1174 0.0046 -3.0277 14 6 7.4257 -0.5314 -4.4272 15 1 6.5570 -1.0662 -4.8110 16 6 7.7585 0.6360 -5.3586 17 7 8.5704 -1.4432 -4.3597 18 6 8.7239 -2.4206 -5.3063 19 1 8.0036 -2.5165 -6.1053 20 6 9.8054 -3.2882 -5.2391 21 7 10.6835 -3.1711 -4.2656 22 14 10.0145 -4.6221 -6.5300 23 1 10.8241 -4.0963 -7.6583 24 1 10.7052 -5.7904 -5.9274 25 1 8.6803 -5.0399 -7.0307 26 6 6.7863 -1.1633 -2.0959 27 6 6.5121 -0.6260 -0.6878 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2867 2.4660 0.0078 32 1 1.7664 4.5137 -0.0044 33 1 6.4766 2.1353 -1.3784 34 1 4.7301 2.1217 -1.7281 35 1 6.1497 1.7768 -3.7807 36 1 5.0467 0.4169 -3.4590 37 1 7.9861 0.5399 -2.6443 38 1 6.9070 1.3147 -5.4089 39 1 8.6272 1.1708 -4.9748 40 1 7.9786 0.2541 -6.3555 41 1 9.2173 -1.3571 -3.6421 42 1 11.4394 -3.7772 -4.2188 43 1 5.9028 -1.6841 -2.4651 44 1 7.6293 -1.8536 -2.0641 45 1 7.4221 -0.1845 -0.2815 46 1 6.1807 -1.4394 -0.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691691713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:57 Heat of formation + Delta-G solvation = -44.749549 kcal Electronic energy + Delta-G solvation = -27566.508043 eV Core-core repulsion = 23775.836553 eV Total energy + Delta-G solvation = -3790.671490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59928 -40.57612 -39.07598 -36.96401 -36.84140 -34.61748 -32.86980 -32.23620 -30.89073 -29.88661 -28.11849 -26.73425 -25.83579 -25.24540 -24.02620 -22.81951 -21.45175 -20.91556 -20.47403 -19.42470 -18.85585 -17.94194 -17.56724 -16.88547 -16.75525 -16.55878 -16.13076 -15.76191 -15.62695 -15.50024 -15.12066 -14.83984 -14.62125 -14.49291 -14.27891 -14.01423 -13.89285 -13.58504 -13.41135 -13.19120 -13.02621 -12.86530 -12.78334 -12.53123 -12.29722 -12.23296 -12.12819 -12.01261 -11.94594 -11.78825 -11.48439 -11.29768 -11.25397 -10.99565 -10.86972 -9.84823 -9.56442 -9.00320 -8.93976 -7.90920 -5.17015 -0.42867 0.36809 0.87327 1.38132 1.46390 1.47479 1.55517 1.87161 2.19463 2.56319 2.57804 3.42667 3.60729 3.75058 3.82519 3.83178 4.03949 4.14130 4.20951 4.23074 4.29872 4.34920 4.36546 4.46010 4.57183 4.61104 4.64824 4.69970 4.75276 4.82191 4.89061 4.90513 4.94821 5.01466 5.09162 5.15337 5.17740 5.25543 5.33475 5.50666 5.54039 5.63968 5.70776 6.24109 6.32246 6.41105 7.11959 7.38291 8.17332 8.39785 9.32527 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002643 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.608738 B =10592.712940 C =11035.536277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.171 3.829 4 C -0.221 4.221 5 C -0.187 4.187 6 S 0.285 5.715 7 C -0.376 4.376 8 C 0.592 3.408 9 O -0.585 6.585 10 N -0.606 5.606 11 C 0.096 3.904 12 C -0.118 4.118 13 C -0.079 4.079 14 C 0.172 3.828 15 H 0.029 0.971 16 C -0.155 4.155 17 N -0.733 5.733 18 C -0.231 4.231 19 H 0.069 0.931 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.274 1.274 26 C -0.111 4.111 27 C 0.120 3.880 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.214 0.786 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.029 0.971 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.040 0.960 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.945 21.390 8.998 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.111 3.889 4 C -0.253 4.253 5 C -0.325 4.325 6 S 0.551 5.449 7 C -0.495 4.495 8 C 0.383 3.617 9 O -0.467 6.467 10 N -0.339 5.339 11 C -0.026 4.026 12 C -0.156 4.156 13 C -0.098 4.098 14 C 0.064 3.936 15 H 0.047 0.953 16 C -0.214 4.214 17 N -0.373 5.373 18 C -0.363 4.363 19 H 0.087 0.913 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.149 4.149 27 C -0.003 4.003 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.193 0.807 32 H 0.231 0.769 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.680 21.401 9.195 31.148 hybrid contribution -0.811 -2.315 -0.431 2.491 sum -21.490 19.086 8.764 30.048 Atomic orbital electron populations 1.23446 0.75708 1.05514 1.03033 1.86196 1.23953 1.25980 1.87446 1.18682 0.90234 0.86368 0.93656 1.20188 1.03466 0.89598 1.12021 1.25680 0.98933 1.05160 1.02684 1.82974 1.03681 0.90873 1.67395 1.22657 0.95419 1.00704 1.30693 1.16091 0.80743 0.85585 0.79248 1.90787 1.76657 1.34448 1.44823 1.48130 1.19281 1.26328 1.40118 1.22299 1.04068 0.87809 0.88417 1.21952 0.97125 0.99748 0.96802 1.21270 0.98561 0.95462 0.94510 1.20458 0.89082 0.90168 0.93930 0.95254 1.22331 1.01305 0.98638 0.99149 1.42585 1.27566 1.35802 1.31365 1.19552 1.05879 1.06680 1.04214 0.91271 1.25438 0.98185 1.02395 1.00806 1.69800 1.15628 1.41465 1.35063 0.85255 0.77594 0.78950 0.78700 1.21458 1.22464 1.19870 1.21697 1.00581 0.98271 0.94399 1.21518 0.90182 0.91317 0.97234 0.87376 0.90791 0.90606 0.80715 0.76887 0.88711 0.87812 0.87387 0.92596 0.90692 0.90259 0.93448 0.95200 0.79502 0.94235 0.94116 0.92249 0.89919 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.94 113.37 1.13 1.37 16 2 O -0.32 -8.47 10.05 -89.64 -0.90 -9.38 16 3 C 0.17 3.95 6.68 21.99 0.15 4.10 16 4 C -0.22 -2.93 9.17 21.17 0.19 -2.74 16 5 C -0.19 -1.71 10.90 66.77 0.73 -0.98 16 6 S 0.29 3.89 19.88 -56.49 -1.12 2.76 16 7 C -0.38 -9.45 5.23 22.90 0.12 -9.33 16 8 C 0.59 19.55 7.26 85.10 0.62 20.17 16 9 O -0.58 -24.72 16.09 -3.07 -0.05 -24.76 16 10 N -0.61 -17.49 2.97 -829.38 -2.46 -19.96 16 11 C 0.10 2.00 5.54 86.36 0.48 2.48 16 12 C -0.12 -2.74 5.04 30.67 0.15 -2.59 16 13 C -0.08 -2.45 1.79 -10.77 -0.02 -2.47 16 14 C 0.17 6.60 2.47 44.99 0.11 6.71 16 15 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 16 C -0.15 -5.11 9.14 71.98 0.66 -4.45 16 17 N -0.73 -36.62 4.40 -322.94 -1.42 -38.04 16 18 C -0.23 -12.96 9.93 84.03 0.83 -12.12 16 19 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 20 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 21 N -0.97 -59.88 13.06 21.65 0.28 -59.59 16 22 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.11 -3.96 5.22 30.67 0.16 -3.80 16 27 C 0.12 3.85 6.44 86.36 0.56 4.40 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 0.72 7.87 -2.38 -0.02 0.70 16 30 H 0.08 0.71 7.89 -2.39 -0.02 0.69 16 31 H 0.18 1.27 6.99 -2.91 -0.02 1.25 16 32 H 0.21 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.77 4.51 -13.13 -0.06 1.71 16 35 H 0.11 1.94 6.36 -2.39 -0.02 1.92 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.08 1.96 6.40 -2.39 -0.02 1.95 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.37 19.97 7.58 -92.71 -0.70 19.27 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 2.49 7.40 -2.39 -0.02 2.47 16 45 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.07 2.47 6.99 -2.39 -0.02 2.46 16 Total: -1.00 -80.23 376.99 2.93 -77.31 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.24 Total: 25.61 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.33 Total: -3.23 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -3.60 Total: -117.60 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.95 Total: -34.14 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.12 Total: 2.76 kcal Total: -80.23 2.93 -77.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.557 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds