Wall clock time and date at job start Tue Mar 31 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21550 * 119.99994 * 0.02562 * 20 19 18 22 22 C 1.47842 * 119.99778 * 179.97438 * 20 19 18 23 23 C 1.39556 * 120.55097 * 359.72594 * 22 20 19 24 24 N 1.31656 * 120.62722 * 179.68184 * 23 22 20 25 25 C 1.31943 * 121.90340 * 0.62976 * 24 23 22 26 26 C 1.38534 * 121.04409 * 359.65679 * 25 24 23 27 27 F 1.35102 * 120.37545 * 180.02562 * 26 25 24 28 28 C 1.38615 * 119.25416 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 30 30 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.08002 * 119.69038 * 359.97438 * 23 22 20 43 43 H 1.08003 * 119.47898 * 179.68318 * 25 24 23 44 44 H 1.08003 * 120.86488 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.1481 0.5993 10.4387 16 1 2.4762 0.8748 11.0590 17 1 1.4088 2.4956 9.6050 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6264 -1.4465 -3.7795 22 6 1.6041 0.3496 -4.8700 23 6 0.8742 1.5333 -4.7533 24 7 0.5300 2.2174 -5.8242 25 6 0.8447 1.8140 -7.0403 26 6 1.5629 0.6466 -7.2423 27 9 1.8783 0.2464 -8.4935 28 6 1.9543 -0.1061 -6.1461 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 0.6528 0.1794 2.4753 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 2.9152 -1.3542 9.5290 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 0.5930 1.8941 -3.7749 43 1 0.5379 2.4032 -7.8918 44 1 2.5154 -1.0201 -6.2735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698745062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:41 Heat of formation + Delta-G solvation = -85.013179 kcal Electronic energy + Delta-G solvation = -27087.317922 eV Core-core repulsion = 22760.980045 eV Total energy + Delta-G solvation = -4326.337877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.60929 -41.18077 -39.59356 -38.42220 -37.35087 -35.10767 -33.91810 -33.28445 -32.63802 -31.45751 -31.18091 -27.47342 -27.31642 -25.48736 -24.52306 -24.27777 -23.08888 -21.31797 -20.55591 -19.32701 -18.80216 -18.05034 -17.90130 -17.58918 -16.79285 -16.59154 -16.49809 -15.93971 -15.85701 -15.55086 -14.89061 -14.57906 -14.52449 -14.45942 -14.22845 -13.95945 -13.87020 -13.74038 -13.47249 -13.06244 -13.04776 -12.86632 -12.69520 -12.10514 -11.62427 -11.56590 -11.31324 -11.11369 -11.04727 -10.97402 -10.92193 -10.61691 -10.40584 -10.23330 -10.16179 -9.76949 -9.52508 -9.51222 -8.49155 -8.10001 -7.97652 -6.43161 -3.84126 -0.17920 0.29687 2.22039 2.49585 3.06179 3.16753 3.25631 3.29606 3.31579 3.58718 3.88960 3.96908 4.00856 4.05598 4.10395 4.26195 4.41171 4.62327 4.64383 4.76640 4.86627 5.06838 5.09926 5.20031 5.23517 5.26998 5.34206 5.44423 5.53149 5.63959 5.75256 5.76537 5.79352 5.88584 5.95918 6.03007 6.10731 6.24859 6.91927 6.99882 7.16061 7.53780 7.61684 7.62661 8.04699 8.59545 9.16287 9.52686 10.03910 10.74500 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039412 B = 0.001412 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.271127 B =19827.774890 C =20358.562657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.124 3.876 19 N -0.717 5.717 20 C 0.562 3.438 21 O -0.528 6.528 22 C -0.156 4.156 23 C 0.125 3.875 24 N -0.456 5.456 25 C 0.098 3.902 26 C 0.045 3.955 27 F -0.124 7.124 28 C -0.052 4.052 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.349 0.651 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 0.304 -29.699 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.369 5.369 20 C 0.347 3.653 21 O -0.405 6.405 22 C -0.161 4.161 23 C -0.034 4.034 24 N -0.164 5.164 25 C -0.060 4.060 26 C 0.023 3.977 27 F -0.102 7.102 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.170 0.830 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.238 0.762 42 H 0.185 0.815 43 H 0.192 0.808 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.244 1.339 -29.627 29.742 hybrid contribution -0.159 -1.346 0.660 1.508 sum -2.403 -0.008 -28.967 29.067 Atomic orbital electron populations 1.21921 0.94629 1.02185 1.02391 1.21386 0.96535 1.01288 0.92984 0.89086 1.21873 1.00839 0.94421 0.89282 1.60084 1.21040 1.49037 1.00013 1.21673 1.01204 0.95380 0.89987 1.19804 0.85650 0.87947 0.84036 1.90517 1.44396 1.26233 1.85707 1.41864 1.49458 1.24218 1.04436 1.19708 1.32898 1.06779 0.83616 0.87906 1.25265 0.96867 0.96654 0.99119 1.69614 1.38795 1.21776 1.24079 0.85852 0.78140 0.79954 0.80312 1.20429 1.20914 1.19399 1.21484 1.00653 0.95271 0.82515 1.45901 1.57400 1.27940 1.05633 1.17865 0.79766 0.84787 0.82836 1.90824 1.39495 1.23712 1.86468 1.20928 1.02883 0.98015 0.94280 1.23125 0.92149 0.89796 0.98304 1.67791 1.19044 1.31432 0.98085 1.23210 0.93733 0.92762 0.96342 1.18681 1.01773 0.96788 0.80439 1.91573 1.90984 1.90320 1.37352 1.21814 0.96128 0.99862 0.90086 0.92784 0.92528 0.91227 0.90693 0.95109 0.83036 0.93834 0.89542 0.77443 0.91861 0.90698 0.90890 0.76220 0.81451 0.80813 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.10 -0.86 2.63 -90.62 -0.24 -1.09 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.07 0.71 5.14 -3.82 -0.02 0.69 16 5 N -0.67 -10.00 6.12 -115.05 -0.70 -10.70 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 8 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 9 N -0.56 -14.12 5.29 -10.97 -0.06 -14.18 16 10 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.12 0.98 5.06 -4.05 -0.02 0.96 16 19 N -0.72 -4.89 5.24 -61.25 -0.32 -5.21 16 20 C 0.56 4.95 7.78 -12.33 -0.10 4.85 16 21 O -0.53 -6.57 16.42 5.32 0.09 -6.49 16 22 C -0.16 -1.11 5.89 -104.83 -0.62 -1.72 16 23 C 0.12 0.73 10.71 -17.14 -0.18 0.55 16 24 N -0.46 -3.13 10.34 -12.86 -0.13 -3.27 16 25 C 0.10 0.56 11.16 -17.39 -0.19 0.36 16 26 C 0.04 0.29 7.33 -39.33 -0.29 0.00 16 27 F -0.12 -0.86 17.28 2.25 0.04 -0.82 16 28 C -0.05 -0.37 9.70 -38.80 -0.38 -0.74 16 29 H 0.05 0.32 7.18 -51.93 -0.37 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.65 6.68 -51.93 -0.35 0.31 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.36 6.69 -39.29 -0.26 5.10 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.40 1.77 5.72 -40.82 -0.23 1.54 16 42 H 0.17 0.53 6.42 -52.49 -0.34 0.19 16 43 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 44 H 0.16 1.12 7.74 -52.48 -0.41 0.71 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -33.79 380.79 -7.22 -41.02 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.60 Total: 11.21 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.06 Total: 5.96 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.49 Total: -56.97 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.04 Total: -0.82 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.79 -7.22 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698745062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.997 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds