Wall clock time and date at job start Tue Mar 31 2020 20:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21550 * 119.99994 * 0.02562 * 20 19 18 22 22 C 1.47842 * 119.99778 * 179.97438 * 20 19 18 23 23 C 1.39556 * 120.55097 * 359.72594 * 22 20 19 24 24 N 1.31656 * 120.62722 * 179.68184 * 23 22 20 25 25 C 1.31943 * 121.90340 * 0.62976 * 24 23 22 26 26 C 1.38534 * 121.04409 * 359.65679 * 25 24 23 27 27 F 1.35102 * 120.37545 * 180.02562 * 26 25 24 28 28 C 1.38615 * 119.25416 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 30 30 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.08002 * 119.69038 * 359.97438 * 23 22 20 43 43 H 1.08003 * 119.47898 * 179.68318 * 25 24 23 44 44 H 1.08003 * 120.86488 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.1481 0.5993 10.4387 16 1 2.4762 0.8748 11.0590 17 1 1.4088 2.4956 9.6050 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6264 -1.4465 -3.7795 22 6 1.6041 0.3496 -4.8700 23 6 0.8742 1.5333 -4.7533 24 7 0.5300 2.2174 -5.8242 25 6 0.8447 1.8140 -7.0403 26 6 1.5629 0.6466 -7.2423 27 9 1.8783 0.2464 -8.4935 28 6 1.9543 -0.1061 -6.1461 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 0.6528 0.1794 2.4753 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 2.9152 -1.3542 9.5290 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 0.5930 1.8941 -3.7749 43 1 0.5379 2.4032 -7.8918 44 1 2.5154 -1.0201 -6.2735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698745062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:40 Heat of formation + Delta-G solvation = -111.011502 kcal Electronic energy + Delta-G solvation = -27088.445294 eV Core-core repulsion = 22760.980045 eV Total energy + Delta-G solvation = -4327.465249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.11773 -41.74432 -40.28038 -40.08747 -38.32961 -36.23164 -35.71297 -33.92402 -33.47214 -33.17438 -31.98748 -28.80984 -27.95791 -26.72749 -25.64821 -24.79359 -24.17594 -21.96544 -21.36969 -20.99300 -19.91736 -19.42095 -18.57968 -18.05739 -17.86798 -17.33951 -17.17829 -17.02243 -16.73251 -16.56776 -16.39156 -15.98425 -15.58511 -15.34394 -15.17613 -15.00513 -14.67666 -14.50392 -14.34344 -14.27942 -13.91887 -13.59849 -13.49548 -13.41671 -13.32795 -13.06862 -12.78386 -12.41079 -12.12681 -12.07844 -11.83542 -11.73471 -11.62041 -11.49545 -11.16499 -10.73685 -10.33644 -10.31844 -10.09683 -10.00669 -9.30111 -8.45915 -5.94728 -0.68062 -0.20188 1.38922 1.42903 1.55605 1.61288 1.87530 2.06383 2.30207 2.53727 2.81734 2.96263 3.14014 3.21604 3.48299 3.54464 3.56661 3.61252 3.89897 3.93325 3.96208 4.01254 4.33700 4.36638 4.49156 4.55149 4.59345 4.60379 4.62794 4.71646 4.78320 4.82971 4.97512 5.03360 5.19650 5.32248 5.35697 5.41749 5.43681 5.90115 6.11621 6.34349 6.45221 6.53290 6.60911 7.00908 7.13390 7.57338 8.12341 8.71396 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039412 B = 0.001412 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.271127 B =19827.774890 C =20358.562657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.065 3.935 5 N -0.681 5.681 6 C 0.064 3.936 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.273 1.273 18 C 0.131 3.869 19 N -0.704 5.704 20 C 0.564 3.436 21 O -0.571 6.571 22 C -0.165 4.165 23 C 0.134 3.866 24 N -0.472 5.472 25 C 0.107 3.893 26 C 0.039 3.961 27 F -0.128 7.128 28 C -0.059 4.059 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.195 0.805 43 H 0.201 0.799 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 0.723 -30.339 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.064 4.064 5 N -0.315 5.315 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.198 1.198 18 C 0.007 3.993 19 N -0.356 5.356 20 C 0.351 3.649 21 O -0.451 6.451 22 C -0.170 4.170 23 C -0.024 4.024 24 N -0.180 5.180 25 C -0.051 4.051 26 C 0.017 3.983 27 F -0.107 7.107 28 C -0.086 4.086 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.254 0.746 42 H 0.211 0.789 43 H 0.217 0.783 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.669 1.759 -30.276 30.444 hybrid contribution -0.038 -1.462 0.779 1.657 sum -2.706 0.297 -29.496 29.622 Atomic orbital electron populations 1.21913 0.94077 1.02376 1.02654 1.21229 0.96838 1.00838 0.92000 0.89224 1.21975 1.01315 0.94756 0.88394 1.60085 1.20861 1.50066 1.00439 1.21536 1.02233 0.95087 0.88022 1.20901 0.83919 0.87665 0.85037 1.90484 1.45797 1.28163 1.86477 1.41941 1.50040 1.24339 1.04769 1.19683 1.34419 1.07044 0.85320 0.90244 1.26036 0.96409 0.97569 1.01206 1.69675 1.38908 1.22521 1.25025 0.84926 0.78235 0.78172 0.76999 1.19607 1.19631 1.19766 1.21338 1.00272 0.95169 0.82512 1.45770 1.56817 1.28144 1.04841 1.18076 0.79029 0.84261 0.83571 1.90804 1.41605 1.25630 1.87056 1.20789 1.04112 0.98656 0.93449 1.23499 0.90777 0.88825 0.99291 1.67896 1.19722 1.31793 0.98570 1.23624 0.92334 0.92277 0.96890 1.18703 1.02349 0.97179 0.80051 1.91561 1.91119 1.90439 1.37558 1.21882 0.96161 0.99910 0.90637 0.90647 0.92400 0.92836 0.90185 0.94036 0.83457 0.91633 0.87850 0.76986 0.91326 0.91270 0.91180 0.74629 0.78865 0.78267 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 71.98 0.64 -1.48 16 2 C -0.09 -1.33 2.63 -10.79 -0.03 -1.36 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 4 C 0.06 1.28 5.14 86.31 0.44 1.72 16 5 N -0.68 -19.56 6.12 -517.92 -3.17 -22.73 16 6 C 0.06 2.09 6.17 85.56 0.53 2.61 16 7 C 0.44 20.39 7.82 87.66 0.69 21.08 16 8 O -0.62 -33.82 15.78 -3.06 -0.05 -33.86 16 9 N -0.57 -29.12 5.29 -306.99 -1.62 -30.74 16 10 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 14 Si 0.99 42.56 29.55 68.60 2.03 44.58 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.13 1.86 5.06 86.38 0.44 2.29 16 19 N -0.70 -8.37 5.24 -465.98 -2.44 -10.81 16 20 C 0.56 9.45 7.78 86.78 0.68 10.13 16 21 O -0.57 -14.24 16.42 -3.87 -0.06 -14.30 16 22 C -0.16 -2.17 5.89 -20.00 -0.12 -2.29 16 23 C 0.13 1.30 10.71 85.04 0.91 2.21 16 24 N -0.47 -5.49 10.34 -194.59 -2.01 -7.50 16 25 C 0.11 1.02 11.16 84.75 0.95 1.97 16 26 C 0.04 0.46 7.33 22.43 0.16 0.63 16 27 F -0.13 -1.69 17.28 44.97 0.78 -0.91 16 28 C -0.06 -0.82 9.70 22.78 0.22 -0.60 16 29 H 0.07 0.70 7.18 -2.39 -0.02 0.69 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.94 6.68 -2.39 -0.02 0.93 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.35 10.37 6.69 -89.69 -0.60 9.77 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 38 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.42 2.60 5.72 -92.71 -0.53 2.07 16 42 H 0.19 0.64 6.42 -2.91 -0.02 0.62 16 43 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.16 2.26 7.74 -2.91 -0.02 2.24 16 Total: -1.00 -73.59 380.79 -0.28 -73.87 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.79 Total: 32.84 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.78 Total: 18.63 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -8.96 Total: -120.84 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.11 Total: -48.16 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.91 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.59 -0.28 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698745062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.146 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds