Wall clock time and date at job start Tue Mar 31 2020 20:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47120 * 2 1 4 4 C 1.53002 * 109.47082 * 240.00197 * 2 1 3 5 5 N 1.46895 * 109.47277 * 64.99962 * 4 2 1 6 6 C 1.46896 * 111.00242 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47021 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99444 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99428 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99564 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99934 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00426 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47310 * 90.00057 * 14 12 10 16 16 H 1.48504 * 109.47296 * 209.99895 * 14 12 10 17 17 H 1.48501 * 109.46984 * 329.99850 * 14 12 10 18 18 C 1.53003 * 109.47102 * 120.00140 * 2 1 3 19 19 N 1.46503 * 109.47284 * 294.99605 * 18 2 1 20 20 C 1.34772 * 119.99898 * 179.97438 * 19 18 2 21 21 O 1.21541 * 120.00327 * 0.02562 * 20 19 18 22 22 C 1.47853 * 119.99761 * 180.02562 * 20 19 18 23 23 C 1.39553 * 120.54537 * 0.02562 * 22 20 19 24 24 N 1.31664 * 120.62313 * 179.97438 * 23 22 20 25 25 C 1.31935 * 121.90476 * 0.02562 * 24 23 22 26 26 C 1.38544 * 121.04729 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.37458 * 179.97438 * 26 25 24 28 28 C 1.38620 * 119.24637 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.46948 * 59.99546 * 1 2 3 30 30 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46680 * 299.99941 * 1 2 3 32 32 H 1.09000 * 109.47187 * 185.00054 * 4 2 1 33 33 H 1.08999 * 109.46572 * 304.99848 * 4 2 1 34 34 H 1.00896 * 110.99895 * 56.04272 * 5 4 2 35 35 H 1.09005 * 109.46765 * 299.99886 * 6 5 4 36 36 H 1.08993 * 109.47117 * 59.99895 * 6 5 4 37 37 H 0.96991 * 120.00443 * 359.97438 * 9 7 6 38 38 H 0.97007 * 120.00581 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46772 * 175.00045 * 18 2 1 40 40 H 1.08995 * 109.47322 * 55.00294 * 18 2 1 41 41 H 0.97000 * 119.99638 * 0.02562 * 19 18 2 42 42 H 1.08004 * 119.69295 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.47771 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.85862 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0374 -2.4456 6 6 2.1247 -0.6271 -3.6672 7 6 1.7088 0.1788 -4.8708 8 8 1.0795 1.2054 -4.7253 9 7 2.0361 -0.2413 -6.1089 10 6 1.6572 0.4915 -7.2039 11 1 1.0968 1.4056 -7.0744 12 6 1.9950 0.0587 -8.4803 13 7 1.6323 0.7614 -9.5298 14 14 2.9648 -1.5220 -8.7044 15 1 2.0256 -2.6647 -8.8350 16 1 3.7969 -1.4227 -9.9304 17 1 3.8430 -1.7352 -7.5260 18 6 2.0400 -0.7213 1.2492 19 7 1.6526 0.0353 2.4424 20 6 1.9957 -0.4137 3.6660 21 8 2.6270 -1.4461 3.7795 22 6 1.6041 0.3496 4.8702 23 6 0.8788 1.5360 4.7530 24 7 0.5289 2.2167 5.8244 25 6 0.8443 1.8137 7.0404 26 6 1.5629 0.6466 7.2424 27 9 1.8791 0.2469 8.4937 28 6 1.9539 -0.1063 6.1462 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2951 34 1 1.9881 0.9873 -2.3966 35 1 3.2117 -0.7050 -3.6405 36 1 1.6904 -1.6247 -3.7297 37 1 2.5396 -1.0621 -6.2253 38 1 1.8685 0.4595 -10.4210 39 1 3.1263 -0.7995 1.2055 40 1 1.6055 -1.7198 1.2951 41 1 1.1484 0.8590 2.3518 42 1 0.6018 1.8994 3.7744 43 1 0.5375 2.4030 7.8919 44 1 2.5145 -1.0206 6.2736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698745068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:44 Heat of formation + Delta-G solvation = -78.106896 kcal Electronic energy + Delta-G solvation = -27136.881529 eV Core-core repulsion = 22810.843131 eV Total energy + Delta-G solvation = -4326.038398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.62592 -41.20326 -39.61751 -38.58077 -37.38894 -35.17246 -33.97227 -33.31574 -32.71824 -31.68778 -31.43573 -27.65843 -27.22505 -25.46966 -24.48395 -24.28353 -22.99609 -21.33197 -20.76980 -19.41910 -18.91901 -18.29198 -18.06698 -17.60776 -16.80392 -16.53058 -16.41841 -16.07258 -15.83462 -15.58869 -15.03144 -14.79262 -14.56594 -14.53230 -14.26608 -13.99134 -13.89205 -13.64246 -13.37980 -13.22668 -13.07434 -12.74980 -12.63816 -12.13373 -12.07969 -11.84497 -11.30605 -11.24787 -11.13169 -11.02794 -10.93450 -10.63744 -10.61371 -10.18430 -9.99616 -9.78943 -9.59395 -9.54300 -8.62719 -8.22377 -8.17461 -6.33096 -3.84705 -0.19856 0.27870 2.19578 2.46514 3.00758 3.04060 3.05467 3.13738 3.27756 3.56903 3.71473 3.93385 3.98953 4.02206 4.07951 4.09117 4.39198 4.56836 4.59137 4.73684 4.81550 4.94055 5.05534 5.18052 5.19274 5.19665 5.31462 5.43914 5.55051 5.56923 5.70505 5.75720 5.76475 5.78028 5.84124 5.91143 6.05983 6.29731 6.88909 6.98145 7.02201 7.50936 7.56110 7.59624 8.12277 8.57500 8.92818 9.40316 9.80222 10.79955 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.037239 B = 0.001464 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.723941 B =19119.513068 C =19695.987190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.717 5.717 20 C 0.563 3.437 21 O -0.528 6.528 22 C -0.156 4.156 23 C 0.125 3.875 24 N -0.456 5.456 25 C 0.098 3.902 26 C 0.045 3.955 27 F -0.124 7.124 28 C -0.052 4.052 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.350 0.650 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -2.911 32.130 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.000 4.000 19 N -0.369 5.369 20 C 0.348 3.652 21 O -0.405 6.405 22 C -0.162 4.162 23 C -0.034 4.034 24 N -0.163 5.163 25 C -0.060 4.060 26 C 0.023 3.977 27 F -0.102 7.102 28 C -0.079 4.079 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.238 0.762 42 H 0.186 0.814 43 H 0.192 0.808 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.353 -2.451 31.933 32.029 hybrid contribution 2.068 -1.562 -0.093 2.593 sum 2.421 -4.013 31.840 32.183 Atomic orbital electron populations 1.21782 0.93537 1.02329 1.02270 1.21364 0.97777 1.00084 0.92810 0.90270 1.21892 0.97402 0.97988 0.89137 1.60013 1.64191 1.05937 0.99686 1.21699 0.97844 0.98705 0.90206 1.19703 0.85254 0.87891 0.83630 1.90562 1.42857 1.25871 1.85420 1.42210 1.50937 1.23815 1.06014 1.19432 1.33609 1.07762 0.82667 0.86278 1.25038 0.97840 0.98079 0.95160 1.69622 1.45662 1.38415 0.98384 0.86668 0.80424 0.83701 0.78556 1.19586 1.20187 1.19543 1.21495 1.00372 0.95512 0.82620 1.45895 1.57414 1.27951 1.05616 1.17865 0.79745 0.84772 0.82839 1.90820 1.39504 1.23744 1.86471 1.20922 1.02975 0.97989 0.94269 1.23127 0.92092 0.89826 0.98311 1.67793 1.18944 1.31513 0.98079 1.23215 0.93689 0.92756 0.96352 1.18685 1.01780 0.96774 0.80440 1.91573 1.90966 1.90331 1.37347 1.21809 0.96116 0.99878 0.90089 0.90196 0.92660 0.93690 0.95165 0.90627 0.83019 0.93748 0.89432 0.79681 0.91598 0.90997 0.90709 0.76183 0.81447 0.80797 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.10 -0.79 2.57 -90.62 -0.23 -1.02 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.07 0.65 5.07 -3.83 -0.02 0.63 16 5 N -0.67 -9.17 5.58 -115.06 -0.64 -9.81 16 6 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 7 C 0.45 9.88 7.82 -10.98 -0.09 9.80 16 8 O -0.57 -14.74 15.78 5.55 0.09 -14.65 16 9 N -0.59 -13.79 5.09 -10.96 -0.06 -13.84 16 10 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 14 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 18 C 0.12 0.92 5.06 -4.04 -0.02 0.90 16 19 N -0.72 -4.68 5.24 -61.25 -0.32 -5.00 16 20 C 0.56 4.81 7.78 -12.33 -0.10 4.72 16 21 O -0.53 -6.43 16.42 5.33 0.09 -6.35 16 22 C -0.16 -1.08 5.89 -104.83 -0.62 -1.70 16 23 C 0.13 0.71 10.71 -17.13 -0.18 0.53 16 24 N -0.46 -3.07 10.34 -12.86 -0.13 -3.20 16 25 C 0.10 0.55 11.16 -17.39 -0.19 0.35 16 26 C 0.04 0.28 7.34 -39.33 -0.29 -0.01 16 27 F -0.12 -0.84 17.28 2.25 0.04 -0.80 16 28 C -0.05 -0.36 9.70 -38.80 -0.38 -0.74 16 29 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.29 7.18 -51.93 -0.37 -0.09 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.35 5.02 8.43 -39.29 -0.33 4.68 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 1.68 5.72 -40.82 -0.23 1.45 16 42 H 0.17 0.50 6.42 -52.48 -0.34 0.16 16 43 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.16 1.09 7.74 -52.49 -0.41 0.68 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -34.80 379.93 -6.89 -41.69 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.68 Total: 10.91 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.06 Total: 5.66 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.38 Total: -56.60 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.18 Total: -21.00 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.04 Total: -0.80 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.80 -6.89 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698745068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.419 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds