Wall clock time and date at job start Tue Mar 31 2020 20:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 C 1.52994 * 109.47430 * 120.00724 * 2 1 3 5 5 N 1.46500 * 109.47605 * 175.00005 * 4 2 1 6 6 C 1.36933 * 120.00376 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99908 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99764 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99698 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47260 * 60.00089 * 10 8 6 12 12 H 1.48502 * 109.46985 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47348 * 300.00103 * 10 8 6 14 14 N 1.46508 * 109.46758 * 240.00352 * 2 1 3 15 15 C 1.46491 * 120.00206 * 299.99811 * 14 2 1 16 16 C 1.34778 * 119.99676 * 119.99730 * 14 2 1 17 17 O 1.21608 * 120.00006 * 0.02562 * 16 14 2 18 18 C 1.47355 * 119.99881 * 179.97438 * 16 14 2 19 19 C 1.39951 * 120.22055 * 270.00302 * 18 16 14 20 20 F 1.35102 * 120.07502 * 359.97084 * 19 18 16 21 21 C 1.38139 * 119.85056 * 179.70391 * 19 18 16 22 22 C 1.38434 * 120.30090 * 0.27124 * 21 19 18 23 23 C 1.38097 * 120.44912 * 359.97438 * 22 21 19 24 24 C 1.38774 * 120.14625 * 0.02562 * 23 22 21 25 25 N 1.39278 * 120.15786 * 179.97438 * 24 23 22 26 26 C 1.34784 * 119.99598 * 24.84721 * 25 24 23 27 27 N 1.34774 * 119.99857 * 185.62349 * 26 25 24 28 28 O 1.21579 * 119.99750 * 5.61824 * 26 25 24 29 29 H 1.09001 * 109.46585 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46766 * 299.99014 * 1 2 3 31 31 H 1.08997 * 109.47465 * 59.99618 * 1 2 3 32 32 H 1.09009 * 109.47126 * 294.99947 * 4 2 1 33 33 H 1.09004 * 109.47288 * 54.99891 * 4 2 1 34 34 H 0.97000 * 119.99620 * 359.97438 * 5 4 2 35 35 H 0.96995 * 119.99657 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47391 * 270.00258 * 15 14 2 37 37 H 1.09000 * 109.47540 * 29.99927 * 15 14 2 38 38 H 1.09006 * 109.47199 * 149.99982 * 15 14 2 39 39 H 1.07998 * 119.84709 * 180.25257 * 21 19 18 40 40 H 1.07995 * 119.77621 * 180.02562 * 22 21 19 41 41 H 1.08002 * 119.92563 * 179.97438 * 23 22 21 42 42 H 0.96998 * 120.00596 * 204.84016 * 25 24 23 43 43 H 0.97000 * 120.00382 * 359.97438 * 27 26 25 44 44 H 0.97003 * 119.99943 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1840 -1.4381 2.2069 7 1 3.6470 -1.8434 3.0517 8 6 5.5674 -1.5382 2.1510 9 7 6.2218 -1.0447 1.1212 10 14 6.5002 -2.3732 3.5374 11 1 6.0436 -3.7806 3.6639 12 1 7.9549 -2.3502 3.2394 13 1 6.2438 -1.6532 4.8106 14 7 2.0183 -0.6906 -1.1963 15 6 1.6644 -2.0931 -1.4282 16 6 2.7931 -0.0355 -2.0835 17 8 3.0872 1.1286 -1.8907 18 6 3.2847 -0.7302 -3.2864 19 6 4.5071 -1.4110 -3.2566 20 9 5.2421 -1.4333 -2.1233 21 6 4.9577 -2.0648 -4.3869 22 6 4.2083 -2.0450 -5.5507 23 6 3.0028 -1.3728 -5.5955 24 6 2.5324 -0.7097 -4.4709 25 7 1.3169 -0.0312 -4.5159 26 6 0.3743 -0.3959 -5.4075 27 7 -0.7549 0.3298 -5.5293 28 8 0.5426 -1.3796 -6.1020 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -0.1585 2.1369 33 1 1.6055 -1.7200 1.2949 34 1 3.9824 -0.4628 0.4315 35 1 7.1885 -1.1143 1.0823 36 1 2.4157 -2.7376 -0.9720 37 1 0.6905 -2.3002 -0.9848 38 1 1.6237 -2.2850 -2.5005 39 1 5.8990 -2.5936 -4.3626 40 1 4.5685 -2.5593 -6.4294 41 1 2.4253 -1.3624 -6.5081 42 1 1.1487 0.7037 -3.9056 43 1 -0.8893 1.1144 -4.9750 44 1 -1.4331 0.0675 -6.1713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698850327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:11 Heat of formation + Delta-G solvation = -52.806242 kcal Electronic energy + Delta-G solvation = -31014.997447 eV Core-core repulsion = 26690.056167 eV Total energy + Delta-G solvation = -4324.941279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.38861 -41.09882 -39.72528 -38.17690 -36.33229 -34.98663 -33.99895 -33.93589 -32.15370 -30.61431 -29.87255 -29.33974 -26.69638 -25.61500 -24.16627 -23.52524 -22.50581 -21.13361 -21.05834 -19.14059 -18.64700 -18.43129 -17.39304 -17.00173 -16.74572 -16.35270 -16.20683 -15.45978 -15.14756 -15.06378 -14.87006 -14.65414 -14.59163 -14.50674 -13.67025 -13.64389 -13.18476 -12.97737 -12.74937 -12.65060 -12.43772 -12.27944 -12.01080 -11.98213 -11.92193 -11.58114 -11.46827 -10.79099 -10.74106 -10.72531 -10.48445 -10.40413 -10.07876 -10.02114 -9.66736 -9.61845 -8.79299 -8.69293 -8.31466 -8.17988 -6.81786 -5.62564 -2.93328 0.98213 1.23532 2.36955 2.73266 2.75891 3.22504 3.49254 3.53385 3.54906 3.64307 3.97955 4.42806 4.57057 4.67293 4.88892 5.07367 5.15665 5.24883 5.32805 5.33360 5.37904 5.51583 5.67129 5.70894 5.79481 5.90379 5.95460 6.04497 6.11195 6.16048 6.17140 6.31170 6.33275 6.37066 6.42314 6.47451 6.49790 6.72869 6.90461 6.95194 7.42106 7.61666 7.77383 8.12800 8.37449 8.52823 9.64460 10.22658 10.58174 11.57967 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.004198 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.074805 B = 6668.457903 C = 8056.743748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.101 0.899 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.247 4.247 7 H 0.067 0.933 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.903 3.097 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.582 5.582 15 C 0.080 3.920 16 C 0.568 3.432 17 O -0.529 6.529 18 C -0.193 4.193 19 C 0.166 3.834 20 F -0.096 7.096 21 C -0.181 4.181 22 C -0.056 4.056 23 C -0.154 4.154 24 C 0.224 3.776 25 N -0.677 5.677 26 C 0.710 3.290 27 N -0.859 5.859 28 O -0.571 6.571 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.388 0.612 35 H 0.254 0.746 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.411 0.589 43 H 0.400 0.600 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 1.125 -15.697 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.378 4.378 7 H 0.085 0.915 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.734 3.266 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.314 5.314 15 C -0.063 4.063 16 C 0.354 3.646 17 O -0.405 6.405 18 C -0.201 4.201 19 C 0.144 3.856 20 F -0.074 7.074 21 C -0.201 4.201 22 C -0.075 4.075 23 C -0.175 4.175 24 C 0.127 3.873 25 N -0.323 5.323 26 C 0.409 3.591 27 N -0.427 5.427 28 O -0.448 6.448 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.247 0.753 43 H 0.229 0.771 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -14.110 0.854 -15.915 21.287 hybrid contribution 0.469 0.156 1.227 1.323 sum -13.641 1.009 -14.688 20.071 Atomic orbital electron populations 1.22059 0.95087 1.02130 1.01974 1.21477 0.93232 0.98581 0.84712 0.88076 1.20976 0.87430 0.96691 0.93298 1.42278 0.99477 1.70217 1.25217 1.19096 0.89412 1.30127 0.99171 0.91524 1.24736 0.96432 1.01509 0.97812 1.69690 1.07094 1.50079 1.29714 0.86349 0.79133 0.79249 0.81851 1.21448 1.21749 1.21433 1.47645 1.49630 1.12294 1.21839 1.21731 1.01386 0.81991 1.01176 1.17831 0.78135 0.86166 0.82465 1.90817 1.56751 1.16595 1.76379 1.19507 0.98210 1.07894 0.94450 1.17490 0.88670 0.95468 0.83921 1.91836 1.74660 1.93790 1.47091 1.21129 1.02723 1.03883 0.92326 1.20963 0.92931 0.96386 0.97227 1.21333 0.97020 1.00793 0.98311 1.16982 0.84173 0.94223 0.91958 1.42440 1.14260 1.36889 1.38721 1.15841 0.80112 0.82694 0.80489 1.42960 1.20948 1.32575 1.46264 1.90958 1.78827 1.27296 1.47682 0.92261 0.91171 0.92888 0.95488 0.96273 0.77799 0.93577 0.91453 0.91101 0.91763 0.84133 0.84539 0.82721 0.75251 0.77135 0.74786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.17 37.16 0.34 -1.49 16 2 C 0.12 2.07 2.80 -67.93 -0.19 1.88 16 3 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 4 C 0.14 2.95 5.55 -4.05 -0.02 2.93 16 5 N -0.73 -19.14 5.43 -59.91 -0.33 -19.47 16 6 C -0.25 -7.10 9.99 -15.06 -0.15 -7.25 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 9 N -0.92 -28.61 13.06 55.49 0.72 -27.88 16 10 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 N -0.58 -9.81 2.24 -175.23 -0.39 -10.21 16 15 C 0.08 1.20 9.42 59.84 0.56 1.76 16 16 C 0.57 10.52 5.37 -12.55 -0.07 10.46 16 17 O -0.53 -11.45 16.43 5.27 0.09 -11.36 16 18 C -0.19 -3.22 3.92 -104.76 -0.41 -3.63 16 19 C 0.17 2.92 7.29 -38.98 -0.28 2.64 16 20 F -0.10 -2.16 16.83 2.25 0.04 -2.12 16 21 C -0.18 -2.50 10.00 -39.55 -0.40 -2.90 16 22 C -0.06 -0.66 10.02 -39.56 -0.40 -1.05 16 23 C -0.15 -1.97 8.70 -39.43 -0.34 -2.32 16 24 C 0.22 3.10 6.02 -83.49 -0.50 2.60 16 25 N -0.68 -7.57 5.16 -14.05 -0.07 -7.64 16 26 C 0.71 7.41 8.63 -86.91 -0.75 6.66 16 27 N -0.86 -4.96 8.88 27.63 0.25 -4.71 16 28 O -0.57 -7.80 14.33 5.30 0.08 -7.73 16 29 H 0.06 0.65 6.66 -51.93 -0.35 0.31 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 34 H 0.39 11.11 7.06 -40.82 -0.29 10.82 16 35 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 38 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 39 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.16 1.96 5.78 -52.49 -0.30 1.66 16 42 H 0.41 4.22 7.92 -40.82 -0.32 3.90 16 43 H 0.40 1.34 8.85 -40.82 -0.36 0.97 16 44 H 0.42 1.80 8.93 -40.82 -0.36 1.44 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -37.13 373.39 -7.23 -44.36 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.51 Total: 13.24 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.71 Total: 9.95 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: 0.18 Total: -69.92 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.13 -7.23 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698850327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.447 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds