Wall clock time and date at job start Tue Mar 31 2020 20:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46734 * 2 1 4 4 C 1.52992 * 109.47217 * 120.00487 * 2 1 3 5 5 C 1.53006 * 109.47051 * 185.00271 * 4 2 1 6 6 N 1.46501 * 109.47133 * 180.02562 * 5 4 2 7 7 C 1.36933 * 119.99890 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00083 * 180.02562 * 7 6 5 10 10 N 1.31620 * 119.99586 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47315 * 59.99457 * 11 9 7 13 13 H 1.48505 * 109.46822 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46895 * 299.99285 * 11 9 7 15 15 N 1.46499 * 109.46836 * 240.00581 * 2 1 3 16 16 C 1.34776 * 120.00308 * 84.99888 * 15 2 1 17 17 O 1.21620 * 119.99546 * 359.97438 * 16 15 2 18 18 C 1.47355 * 120.00532 * 179.97438 * 16 15 2 19 19 C 1.39951 * 120.22059 * 270.00386 * 18 16 15 20 20 F 1.35102 * 120.07500 * 0.02562 * 19 18 16 21 21 C 1.38139 * 119.85056 * 179.74441 * 19 18 16 22 22 C 1.38434 * 120.30090 * 0.27124 * 21 19 18 23 23 C 1.38097 * 120.44905 * 359.95468 * 22 21 19 24 24 C 1.38774 * 120.14630 * 0.04732 * 23 22 21 25 25 N 1.39278 * 120.15787 * 179.97438 * 24 23 22 26 26 C 1.34784 * 119.99769 * 24.84266 * 25 24 23 27 27 N 1.34773 * 120.00054 * 185.62347 * 26 25 24 28 28 O 1.21583 * 119.99827 * 5.62736 * 26 25 24 29 29 H 1.09003 * 109.46305 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46713 * 299.99047 * 1 2 3 31 31 H 1.08996 * 109.47135 * 59.99506 * 1 2 3 32 32 H 1.09005 * 109.47432 * 304.99758 * 4 2 1 33 33 H 1.08996 * 109.47518 * 64.99914 * 4 2 1 34 34 H 1.09001 * 109.47053 * 300.00047 * 5 4 2 35 35 H 1.08997 * 109.46831 * 59.99812 * 5 4 2 36 36 H 0.96999 * 119.99929 * 359.97438 * 6 5 4 37 37 H 0.97008 * 119.99619 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99899 * 264.99762 * 15 2 1 39 39 H 1.07998 * 119.84709 * 180.25257 * 21 19 18 40 40 H 1.07995 * 119.77627 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.92556 * 180.02562 * 23 22 21 42 42 H 0.96997 * 120.00788 * 204.84860 * 25 24 23 43 43 H 0.97000 * 120.00186 * 0.02562 * 27 26 25 44 44 H 0.96998 * 119.99922 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5650 -0.6133 1.3136 6 7 4.0534 -1.3045 2.5093 7 6 5.3954 -1.3404 2.7792 8 1 6.0938 -0.8596 2.1103 9 6 5.8583 -1.9959 3.9120 10 7 5.0072 -2.5823 4.7268 11 14 7.6890 -2.0455 4.2797 12 1 8.2010 -0.6600 4.4325 13 1 7.9209 -2.8000 5.5376 14 1 8.4005 -2.7157 3.1617 15 7 2.0184 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8574 1.1618 -2.4118 18 6 2.6387 -0.7124 -3.5603 19 6 4.0094 -0.7520 -3.8401 20 9 4.8881 -0.1532 -3.0067 21 6 4.4623 -1.4095 -4.9674 22 6 3.5661 -2.0248 -5.8245 23 6 2.2106 -1.9895 -5.5628 24 6 1.7352 -1.3341 -4.4358 25 7 0.3681 -1.2979 -4.1720 26 6 -0.4390 -2.2583 -4.6648 27 7 -1.7740 -2.1634 -4.5064 28 8 0.0374 -3.2103 -5.2522 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -0.2619 2.1370 33 1 1.7518 -1.7715 1.2054 34 1 3.9996 -1.0727 0.4258 35 1 3.8532 0.4370 1.3573 36 1 3.4261 -1.7361 3.1103 37 1 5.3306 -3.0400 5.5186 38 1 2.2491 -1.6316 -1.1528 39 1 5.5204 -1.4435 -5.1811 40 1 3.9295 -2.5362 -6.7035 41 1 1.5190 -2.4728 -6.2370 42 1 -0.0032 -0.5815 -3.6337 43 1 -2.1541 -1.4037 -4.0380 44 1 -2.3548 -2.8548 -4.8608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699137638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:42 Heat of formation + Delta-G solvation = -74.065066 kcal Electronic energy + Delta-G solvation = -29422.573134 eV Core-core repulsion = 25096.710003 eV Total energy + Delta-G solvation = -4325.863131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.04897 -41.30259 -39.89960 -38.45468 -36.54782 -35.22003 -34.36735 -34.16876 -32.28182 -31.25285 -30.24943 -29.64038 -27.92259 -24.68395 -23.88090 -23.79121 -21.81707 -21.40618 -21.03295 -20.54870 -19.04307 -18.77432 -17.97419 -17.09915 -16.99878 -16.62840 -16.45027 -15.74775 -15.62531 -15.45928 -15.23453 -14.85168 -14.80411 -14.41191 -14.14529 -13.86857 -13.53496 -13.39272 -13.29380 -12.92507 -12.86665 -12.57973 -12.30491 -12.04958 -11.94813 -11.25777 -11.03497 -11.00866 -10.80464 -10.66906 -10.61930 -10.60084 -10.23613 -10.08013 -10.04694 -9.68727 -9.14719 -9.09761 -8.84892 -8.49064 -6.91597 -5.75471 -3.04127 0.65621 0.88950 2.15009 2.34746 2.56013 3.02520 3.34489 3.46146 3.49932 3.51453 3.78822 4.00154 4.40310 4.57162 4.61668 4.73215 4.87748 4.96264 5.03406 5.13714 5.26903 5.48612 5.54180 5.62168 5.63374 5.67916 5.76247 5.86004 5.91667 5.99395 6.07292 6.15884 6.19405 6.21886 6.31757 6.33439 6.41717 6.57704 6.81888 6.84930 7.22966 7.38297 7.72016 7.95512 8.03065 8.43656 9.54719 10.11814 10.46727 11.47451 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.002957 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.821663 B = 9466.523971 C =10514.437759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.704 5.704 16 C 0.565 3.435 17 O -0.531 6.531 18 C -0.201 4.201 19 C 0.160 3.840 20 F -0.122 7.122 21 C -0.176 4.176 22 C -0.052 4.052 23 C -0.148 4.148 24 C 0.231 3.769 25 N -0.678 5.678 26 C 0.710 3.290 27 N -0.857 5.857 28 O -0.569 6.569 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.405 0.595 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.159 0.841 42 H 0.412 0.588 43 H 0.401 0.599 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 2.118 -22.647 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.354 5.354 16 C 0.350 3.650 17 O -0.408 6.408 18 C -0.208 4.208 19 C 0.139 3.861 20 F -0.101 7.101 21 C -0.196 4.196 22 C -0.071 4.071 23 C -0.168 4.168 24 C 0.133 3.867 25 N -0.324 5.324 26 C 0.409 3.591 27 N -0.425 5.425 28 O -0.445 6.445 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.240 0.760 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.248 0.752 43 H 0.229 0.771 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.220 2.271 -23.090 27.212 hybrid contribution 0.518 -0.088 1.132 1.248 sum -13.702 2.183 -21.957 25.973 Atomic orbital electron populations 1.22165 0.95332 1.01988 1.02352 1.21083 0.93585 0.97928 0.83656 0.89049 1.22066 0.98265 1.00775 0.96182 1.20637 0.90211 0.95718 0.90858 1.42341 1.05385 1.64945 1.25083 1.19200 0.83837 1.28476 1.05538 0.91259 1.24736 0.97736 1.00856 0.97662 1.69652 1.32881 1.40689 1.15176 0.86257 0.85112 0.77516 0.77270 1.21239 1.21668 1.21220 1.46199 1.65657 1.14404 1.09164 1.17866 0.77842 0.86406 0.82932 1.90828 1.50006 1.14874 1.85069 1.19494 0.92580 1.09928 0.98817 1.17296 0.84809 0.94478 0.89493 1.91601 1.67484 1.80838 1.70132 1.21107 1.01775 1.01784 0.94892 1.21029 0.92059 0.95680 0.98336 1.21441 0.96708 1.01976 0.96698 1.17000 0.81270 0.95852 0.92547 1.42460 1.05697 1.28874 1.55401 1.15843 0.81820 0.82054 0.79428 1.42958 1.05375 1.30144 1.64058 1.90972 1.74282 1.32529 1.46710 0.92449 0.91181 0.92643 0.90063 0.91315 0.96319 0.96361 0.78344 0.93490 0.76003 0.83913 0.84161 0.82386 0.75167 0.77068 0.74594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.84 2.57 -67.93 -0.17 1.66 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.10 16 6 N -0.73 -18.87 5.60 -59.91 -0.34 -19.20 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.94 -28.56 13.06 55.49 0.72 -27.84 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 N -0.70 -8.97 4.53 -54.90 -0.25 -9.22 16 16 C 0.57 7.79 5.78 -12.55 -0.07 7.72 16 17 O -0.53 -8.71 16.77 5.26 0.09 -8.62 16 18 C -0.20 -2.52 5.65 -104.76 -0.59 -3.11 16 19 C 0.16 2.05 7.29 -38.98 -0.28 1.76 16 20 F -0.12 -1.85 16.83 2.25 0.04 -1.81 16 21 C -0.18 -1.75 10.00 -39.55 -0.40 -2.15 16 22 C -0.05 -0.46 10.02 -39.56 -0.40 -0.85 16 23 C -0.15 -1.50 8.70 -39.43 -0.34 -1.85 16 24 C 0.23 2.53 6.44 -83.49 -0.54 1.99 16 25 N -0.68 -5.96 5.16 -14.05 -0.07 -6.04 16 26 C 0.71 6.25 8.63 -86.91 -0.75 5.50 16 27 N -0.86 -3.81 8.88 27.63 0.25 -3.56 16 28 O -0.57 -6.95 14.33 5.29 0.08 -6.87 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.40 4.94 8.59 -40.82 -0.35 4.59 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.16 1.65 5.78 -52.49 -0.30 1.35 16 42 H 0.41 3.12 7.92 -40.82 -0.32 2.80 16 43 H 0.40 0.77 8.85 -40.82 -0.36 0.41 16 44 H 0.42 1.36 8.93 -40.82 -0.36 1.00 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -36.32 381.27 -8.10 -44.42 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.74 Total: 12.39 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.59 Total: 2.80 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 0.31 Total: -65.86 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.32 -8.10 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699137638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.646 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds