Wall clock time and date at job start Tue Mar 31 2020 20:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46734 * 2 1 4 4 C 1.52992 * 109.47217 * 120.00487 * 2 1 3 5 5 C 1.53006 * 109.47051 * 185.00271 * 4 2 1 6 6 N 1.46501 * 109.47133 * 180.02562 * 5 4 2 7 7 C 1.36933 * 119.99890 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00083 * 180.02562 * 7 6 5 10 10 N 1.31620 * 119.99586 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47315 * 59.99457 * 11 9 7 13 13 H 1.48505 * 109.46822 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46895 * 299.99285 * 11 9 7 15 15 N 1.46499 * 109.46836 * 240.00581 * 2 1 3 16 16 C 1.34776 * 120.00308 * 84.99888 * 15 2 1 17 17 O 1.21620 * 119.99546 * 359.97438 * 16 15 2 18 18 C 1.47355 * 120.00532 * 179.97438 * 16 15 2 19 19 C 1.39951 * 120.22059 * 270.00386 * 18 16 15 20 20 F 1.35102 * 120.07500 * 0.02562 * 19 18 16 21 21 C 1.38139 * 119.85056 * 179.74441 * 19 18 16 22 22 C 1.38434 * 120.30090 * 0.27124 * 21 19 18 23 23 C 1.38097 * 120.44905 * 359.95468 * 22 21 19 24 24 C 1.38774 * 120.14630 * 0.04732 * 23 22 21 25 25 N 1.39278 * 120.15787 * 179.97438 * 24 23 22 26 26 C 1.34784 * 119.99769 * 24.84266 * 25 24 23 27 27 N 1.34773 * 120.00054 * 185.62347 * 26 25 24 28 28 O 1.21583 * 119.99827 * 5.62736 * 26 25 24 29 29 H 1.09003 * 109.46305 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46713 * 299.99047 * 1 2 3 31 31 H 1.08996 * 109.47135 * 59.99506 * 1 2 3 32 32 H 1.09005 * 109.47432 * 304.99758 * 4 2 1 33 33 H 1.08996 * 109.47518 * 64.99914 * 4 2 1 34 34 H 1.09001 * 109.47053 * 300.00047 * 5 4 2 35 35 H 1.08997 * 109.46831 * 59.99812 * 5 4 2 36 36 H 0.96999 * 119.99929 * 359.97438 * 6 5 4 37 37 H 0.97008 * 119.99619 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99899 * 264.99762 * 15 2 1 39 39 H 1.07998 * 119.84709 * 180.25257 * 21 19 18 40 40 H 1.07995 * 119.77627 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.92556 * 180.02562 * 23 22 21 42 42 H 0.96997 * 120.00788 * 204.84860 * 25 24 23 43 43 H 0.97000 * 120.00186 * 0.02562 * 27 26 25 44 44 H 0.96998 * 119.99922 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5650 -0.6133 1.3136 6 7 4.0534 -1.3045 2.5093 7 6 5.3954 -1.3404 2.7792 8 1 6.0938 -0.8596 2.1103 9 6 5.8583 -1.9959 3.9120 10 7 5.0072 -2.5823 4.7268 11 14 7.6890 -2.0455 4.2797 12 1 8.2010 -0.6600 4.4325 13 1 7.9209 -2.8000 5.5376 14 1 8.4005 -2.7157 3.1617 15 7 2.0184 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8574 1.1618 -2.4118 18 6 2.6387 -0.7124 -3.5603 19 6 4.0094 -0.7520 -3.8401 20 9 4.8881 -0.1532 -3.0067 21 6 4.4623 -1.4095 -4.9674 22 6 3.5661 -2.0248 -5.8245 23 6 2.2106 -1.9895 -5.5628 24 6 1.7352 -1.3341 -4.4358 25 7 0.3681 -1.2979 -4.1720 26 6 -0.4390 -2.2583 -4.6648 27 7 -1.7740 -2.1634 -4.5064 28 8 0.0374 -3.2103 -5.2522 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -0.2619 2.1370 33 1 1.7518 -1.7715 1.2054 34 1 3.9996 -1.0727 0.4258 35 1 3.8532 0.4370 1.3573 36 1 3.4261 -1.7361 3.1103 37 1 5.3306 -3.0400 5.5186 38 1 2.2491 -1.6316 -1.1528 39 1 5.5204 -1.4435 -5.1811 40 1 3.9295 -2.5362 -6.7035 41 1 1.5190 -2.4728 -6.2370 42 1 -0.0032 -0.5815 -3.6337 43 1 -2.1541 -1.4037 -4.0380 44 1 -2.3548 -2.8548 -4.8608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699137638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:41 Heat of formation + Delta-G solvation = -102.672234 kcal Electronic energy + Delta-G solvation = -29423.813634 eV Core-core repulsion = 25096.710003 eV Total energy + Delta-G solvation = -4327.103631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09250 -42.09310 -40.88084 -39.29959 -37.87298 -36.14598 -35.98154 -34.73075 -33.73630 -32.72947 -31.34937 -30.42093 -29.43655 -26.01764 -25.31437 -24.58684 -23.32745 -22.29858 -22.13058 -21.63540 -19.80842 -19.49499 -19.28073 -18.75709 -17.79507 -17.56810 -17.44104 -16.74953 -16.70734 -16.48244 -16.24773 -16.05717 -15.70995 -15.55185 -15.46072 -15.27824 -15.15525 -14.82127 -14.31801 -14.25643 -13.74090 -13.63390 -13.20085 -13.10991 -12.93144 -12.89321 -12.87175 -12.41620 -12.32671 -12.04736 -11.97469 -11.77407 -11.67854 -11.39059 -11.16033 -10.96868 -10.77831 -10.23481 -9.97704 -9.27387 -9.04434 -7.98816 -5.28066 -0.17195 0.05728 1.25706 1.45116 1.48136 1.51100 1.54488 1.86823 2.02557 2.53299 2.53444 3.09964 3.31918 3.34440 3.43588 3.63256 3.83887 3.90438 4.02475 4.11338 4.21670 4.27452 4.35322 4.52644 4.59436 4.71819 4.73129 4.82726 4.87091 4.96579 5.03455 5.14437 5.21341 5.23843 5.29966 5.31760 5.43789 5.45247 5.62537 5.79443 5.88379 6.23678 6.31566 6.69154 6.96395 7.30389 7.37361 8.04417 8.29661 9.24173 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.002957 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.821663 B = 9466.523971 C =10514.437759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.744 5.744 7 C -0.253 4.253 8 H 0.068 0.932 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.278 1.278 15 N -0.698 5.698 16 C 0.569 3.431 17 O -0.562 6.562 18 C -0.217 4.217 19 C 0.130 3.870 20 F -0.145 7.145 21 C -0.171 4.171 22 C -0.038 4.038 23 C -0.151 4.151 24 C 0.229 3.771 25 N -0.673 5.673 26 C 0.706 3.294 27 N -0.835 5.835 28 O -0.604 6.604 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.006 0.994 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.408 0.592 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.417 0.583 43 H 0.416 0.584 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.328 1.584 -23.978 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.027 3.973 6 N -0.387 5.387 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.801 3.199 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.204 1.204 15 N -0.349 5.349 16 C 0.355 3.645 17 O -0.441 6.441 18 C -0.224 4.224 19 C 0.110 3.890 20 F -0.123 7.123 21 C -0.191 4.191 22 C -0.057 4.057 23 C -0.172 4.172 24 C 0.130 3.870 25 N -0.319 5.319 26 C 0.405 3.595 27 N -0.404 5.404 28 O -0.484 6.484 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.209 0.791 37 H 0.062 0.938 38 H 0.244 0.756 39 H 0.181 0.819 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.255 0.745 43 H 0.247 0.753 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.947 1.762 -24.431 28.695 hybrid contribution 0.681 0.086 1.471 1.623 sum -14.266 1.848 -22.960 27.094 Atomic orbital electron populations 1.22088 0.92423 1.03228 1.03184 1.21000 0.95717 0.96369 0.82636 0.91005 1.21912 0.94339 1.01781 0.97659 1.20748 0.93773 0.94116 0.88669 1.42516 1.04483 1.65285 1.26420 1.19551 0.85310 1.28034 1.05559 0.91384 1.25546 1.02100 1.00971 0.97681 1.69794 1.34676 1.41624 1.15545 0.85235 0.80014 0.77648 0.77023 1.20534 1.21620 1.20378 1.46183 1.65275 1.14461 1.08930 1.18039 0.77112 0.85974 0.83404 1.90801 1.51527 1.16171 1.85623 1.19426 0.92918 1.11198 0.98876 1.17709 0.84778 0.95954 0.90574 1.91539 1.68170 1.81559 1.71038 1.21379 1.03136 1.00754 0.93790 1.21430 0.91190 0.94329 0.98733 1.21615 0.97518 1.01683 0.96387 1.17110 0.81974 0.95491 0.92417 1.42403 1.05062 1.29051 1.55391 1.15999 0.82821 0.81500 0.79169 1.42791 1.03829 1.30713 1.63061 1.90945 1.75184 1.33866 1.48362 0.90971 0.90156 0.92037 0.89536 0.90394 0.96687 0.97562 0.79132 0.93794 0.75604 0.81876 0.80599 0.82311 0.74525 0.75324 0.73590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.48 71.99 0.68 -2.08 16 2 C 0.15 3.73 2.57 44.99 0.12 3.85 16 3 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 4 C -0.12 -3.55 4.87 30.59 0.15 -3.40 16 5 C 0.15 6.34 6.15 86.38 0.53 6.87 16 6 N -0.74 -38.73 5.60 -343.44 -1.92 -40.65 16 7 C -0.25 -14.65 9.99 84.04 0.84 -13.81 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 10 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 11 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 N -0.70 -17.68 4.53 -445.86 -2.02 -19.70 16 16 C 0.57 15.83 5.78 86.64 0.50 16.33 16 17 O -0.56 -18.71 16.77 -4.09 -0.07 -18.78 16 18 C -0.22 -5.45 5.65 -19.95 -0.11 -5.57 16 19 C 0.13 3.35 7.29 22.66 0.17 3.51 16 20 F -0.14 -4.53 16.83 44.97 0.76 -3.77 16 21 C -0.17 -3.18 10.00 22.29 0.22 -2.96 16 22 C -0.04 -0.58 10.02 22.28 0.22 -0.36 16 23 C -0.15 -2.87 8.70 22.36 0.19 -2.68 16 24 C 0.23 4.84 6.44 38.60 0.25 5.09 16 25 N -0.67 -11.13 5.16 -316.63 -1.63 -12.77 16 26 C 0.71 11.45 8.63 179.05 1.55 12.99 16 27 N -0.83 -5.73 8.88 -184.75 -1.64 -7.37 16 28 O -0.60 -14.11 14.33 -3.98 -0.06 -14.17 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.02 0.64 7.75 -2.39 -0.02 0.62 16 35 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 37 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 38 H 0.41 9.86 8.59 -92.71 -0.80 9.06 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.16 3.09 5.78 -2.91 -0.02 3.07 16 42 H 0.42 5.87 7.92 -92.71 -0.73 5.13 16 43 H 0.42 0.60 8.85 -92.71 -0.82 -0.22 16 44 H 0.43 1.88 8.93 -92.71 -0.83 1.05 16 Total: -1.00 -79.11 381.27 -1.28 -80.40 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -2.78 Total: 32.79 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.77 Total: 14.14 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -6.93 Total: -139.62 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.13 Total: -32.95 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.76 Total: -3.77 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -79.11 -1.28 -80.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699137638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.277 kcal (2) G-P(sol) polarization free energy of solvation -79.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds