Wall clock time and date at job start Tue Mar 31 2020 20:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46896 * 109.47526 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00466 * 179.97438 * 6 5 4 8 8 C 1.50690 * 109.47339 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00431 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.37098 * 119.99743 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00360 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99843 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00126 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99859 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47388 * 90.00030 * 15 13 11 17 17 H 1.48503 * 109.47601 * 209.99585 * 15 13 11 18 18 H 1.48497 * 109.47289 * 330.00057 * 15 13 11 19 19 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 20 20 C 1.34779 * 119.99965 * 85.00573 * 19 2 1 21 21 O 1.21530 * 119.99861 * 359.97438 * 20 19 2 22 22 C 1.48001 * 119.99766 * 179.97438 * 20 19 2 23 23 N 1.32804 * 119.75239 * 359.97438 * 22 20 19 24 24 C 1.31434 * 121.66467 * 179.97438 * 23 22 20 25 25 C 1.38676 * 120.98123 * 0.02562 * 24 23 22 26 26 C 1.38452 * 119.39662 * 359.97438 * 25 24 23 27 27 C 1.38963 * 118.46229 * 359.72989 * 26 25 24 28 28 F 1.35102 * 120.50246 * 180.26276 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 35 35 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 36 36 H 1.00900 * 111.00177 * 303.95766 * 6 5 4 37 37 H 1.09003 * 109.47143 * 300.00889 * 7 6 5 38 38 H 1.09005 * 109.46836 * 60.00240 * 7 6 5 39 39 H 0.96996 * 119.99703 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99798 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99991 * 264.99646 * 19 2 1 42 42 H 1.08002 * 119.50617 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.30344 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.76605 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0544 -1.3053 2.5135 7 6 5.5180 -1.2228 2.6085 8 6 5.9823 -1.9426 3.8483 9 8 5.1736 -2.4718 4.5812 10 7 7.2962 -1.9974 4.1435 11 6 7.7186 -2.6518 5.2718 12 1 6.9985 -3.1237 5.9238 13 6 9.0732 -2.7088 5.5758 14 7 9.4781 -3.3364 6.6570 15 14 10.3187 -1.8932 4.4477 16 1 10.5344 -0.4893 4.8811 17 1 11.6043 -2.6338 4.5117 18 1 9.8079 -1.9078 3.0534 19 7 2.0184 -0.6906 -1.1961 20 6 2.1472 -0.0183 -2.3571 21 8 1.8578 1.1608 -2.4117 22 6 2.6410 -0.7159 -3.5653 23 7 2.9563 -2.0043 -3.4999 24 6 3.3978 -2.6608 -4.5494 25 6 3.5527 -2.0283 -5.7738 26 6 3.2365 -0.6854 -5.8898 27 6 2.7660 -0.0163 -4.7664 28 9 2.4400 1.2930 -4.8345 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4369 1.3574 36 1 3.6166 -0.9396 3.3458 37 1 5.9659 -1.6872 1.7299 38 1 5.8204 -0.1768 2.6605 39 1 7.9429 -1.5732 3.5581 40 1 10.4238 -3.3765 6.8690 41 1 2.2491 -1.6318 -1.1525 42 1 3.6442 -3.7082 -4.4567 43 1 3.9168 -2.5783 -6.6290 44 1 3.3484 -0.1710 -6.8328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699154492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:11 Heat of formation + Delta-G solvation = -76.360778 kcal Electronic energy + Delta-G solvation = -27978.381862 eV Core-core repulsion = 23652.419182 eV Total energy + Delta-G solvation = -4325.962680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.37849 -40.95811 -39.57407 -38.48516 -36.99476 -35.08153 -33.88306 -33.40673 -32.00617 -31.65765 -31.14256 -29.32825 -26.40043 -25.54543 -24.15538 -23.87194 -22.41088 -21.68361 -20.80377 -19.37837 -18.69534 -18.28256 -18.11808 -17.60603 -16.58305 -16.41252 -16.07589 -15.97040 -15.61640 -15.13640 -14.91656 -14.66776 -14.38103 -14.22577 -14.03634 -13.80035 -13.74112 -13.63116 -13.54095 -13.02182 -12.97560 -12.75402 -12.46718 -12.29989 -12.14540 -11.69728 -11.33480 -11.30232 -11.14112 -10.97555 -10.72316 -10.59046 -10.58988 -10.09821 -9.96960 -9.62405 -9.56590 -9.31470 -8.58371 -8.19015 -8.12565 -6.30513 -3.81817 -0.05520 0.41098 2.28597 2.65563 3.03331 3.07287 3.15392 3.21114 3.44763 3.59888 3.75185 4.00560 4.04014 4.10971 4.17552 4.22486 4.67407 4.72204 4.77855 4.92090 4.95145 5.03206 5.15726 5.21419 5.26190 5.27787 5.32485 5.49237 5.55226 5.60806 5.67785 5.82281 5.87928 5.90556 5.92428 5.96578 6.06628 6.24991 6.95261 7.10063 7.26202 7.58221 7.60070 7.84910 8.15298 8.60641 8.95675 9.43252 9.83670 10.82643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.002138 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.351803 B =13096.071292 C =14435.086646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.058 3.942 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.700 5.700 20 C 0.569 3.431 21 O -0.523 6.523 22 C 0.045 3.955 23 N -0.429 5.429 24 C 0.090 3.910 25 C -0.119 4.119 26 C -0.119 4.119 27 C 0.110 3.890 28 F -0.105 7.105 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.413 0.587 42 H 0.174 0.826 43 H 0.153 0.847 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 5.524 -28.151 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.071 4.071 6 N -0.301 5.301 7 C -0.085 4.085 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.352 5.352 20 C 0.353 3.647 21 O -0.398 6.398 22 C -0.094 4.094 23 N -0.140 5.140 24 C -0.071 4.071 25 C -0.139 4.139 26 C -0.146 4.146 27 C 0.087 3.913 28 F -0.083 7.083 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.191 0.809 43 H 0.170 0.830 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.493 4.981 -26.970 31.020 hybrid contribution 1.598 1.619 -1.488 2.718 sum -12.894 6.600 -28.458 31.932 Atomic orbital electron populations 1.22164 0.94770 1.02464 1.02670 1.21071 0.94275 0.97557 0.83364 0.89176 1.21876 0.95569 1.02213 0.96696 1.21976 0.94647 0.96137 0.94375 1.60053 1.04638 1.60060 1.05371 1.21698 0.89377 0.98722 0.98682 1.19714 0.82938 0.85785 0.87948 1.90562 1.52993 1.49266 1.51813 1.42214 1.05992 1.50686 1.24186 1.19435 0.93505 1.30498 0.99889 0.86269 1.25040 0.96986 0.97474 0.96698 1.69621 1.16265 1.41719 1.24561 0.86670 0.81933 0.80164 0.80617 1.19665 1.20164 1.19486 1.45941 1.65602 1.14884 1.08780 1.17654 0.78358 0.86056 0.82658 1.90860 1.49812 1.14698 1.84426 1.21428 1.03058 0.91249 0.93641 1.67653 1.08120 1.06151 1.32101 1.22976 0.95478 1.00935 0.87700 1.22365 0.97510 0.94069 0.99913 1.21763 0.98823 0.95487 0.98509 1.18681 0.98248 0.79957 0.94438 1.91637 1.89102 1.30938 1.96626 0.92146 0.92138 0.91236 0.89934 0.89944 0.91071 0.95498 0.83021 0.89569 0.93814 0.79698 0.91626 0.75061 0.80926 0.82979 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.33 2.57 -67.93 -0.17 1.16 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -1.19 5.01 -26.73 -0.13 -1.32 16 5 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 6 N -0.67 -10.30 6.12 -115.06 -0.70 -11.00 16 7 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 8 C 0.45 10.34 7.82 -10.99 -0.09 10.25 16 9 O -0.56 -15.26 15.78 5.55 0.09 -15.17 16 10 N -0.59 -14.24 5.09 -10.97 -0.06 -14.30 16 11 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 15 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.45 6.52 56.52 0.37 -5.09 16 19 N -0.70 -6.85 4.52 -54.70 -0.25 -7.09 16 20 C 0.57 6.68 7.77 -12.26 -0.10 6.58 16 21 O -0.52 -7.65 14.98 5.34 0.08 -7.57 16 22 C 0.05 0.46 6.75 -82.95 -0.56 -0.10 16 23 N -0.43 -3.64 9.54 -9.76 -0.09 -3.73 16 24 C 0.09 0.48 11.18 -17.56 -0.20 0.29 16 25 C -0.12 -0.46 10.11 -39.34 -0.40 -0.86 16 26 C -0.12 -0.66 10.16 -39.23 -0.40 -1.06 16 27 C 0.11 1.01 7.32 -38.82 -0.28 0.73 16 28 F -0.10 -1.20 15.55 2.25 0.04 -1.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.41 3.67 7.93 -40.82 -0.32 3.34 16 42 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.15 0.08 8.06 -52.48 -0.42 -0.34 16 44 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -35.94 382.04 -7.25 -43.19 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.89 Total: 13.12 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.27 Total: 8.28 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.33 Total: -61.22 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.94 -7.25 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.170 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds