Wall clock time and date at job start Tue Mar 31 2020 20:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46896 * 109.47526 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00466 * 179.97438 * 6 5 4 8 8 C 1.50690 * 109.47339 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00431 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.37098 * 119.99743 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00360 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99843 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00126 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99859 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47388 * 90.00030 * 15 13 11 17 17 H 1.48503 * 109.47601 * 209.99585 * 15 13 11 18 18 H 1.48497 * 109.47289 * 330.00057 * 15 13 11 19 19 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 20 20 C 1.34779 * 119.99965 * 85.00573 * 19 2 1 21 21 O 1.21530 * 119.99861 * 359.97438 * 20 19 2 22 22 C 1.48001 * 119.99766 * 179.97438 * 20 19 2 23 23 N 1.32804 * 119.75239 * 359.97438 * 22 20 19 24 24 C 1.31434 * 121.66467 * 179.97438 * 23 22 20 25 25 C 1.38676 * 120.98123 * 0.02562 * 24 23 22 26 26 C 1.38452 * 119.39662 * 359.97438 * 25 24 23 27 27 C 1.38963 * 118.46229 * 359.72989 * 26 25 24 28 28 F 1.35102 * 120.50246 * 180.26276 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 35 35 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 36 36 H 1.00900 * 111.00177 * 303.95766 * 6 5 4 37 37 H 1.09003 * 109.47143 * 300.00889 * 7 6 5 38 38 H 1.09005 * 109.46836 * 60.00240 * 7 6 5 39 39 H 0.96996 * 119.99703 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99798 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99991 * 264.99646 * 19 2 1 42 42 H 1.08002 * 119.50617 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.30344 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.76605 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0544 -1.3053 2.5135 7 6 5.5180 -1.2228 2.6085 8 6 5.9823 -1.9426 3.8483 9 8 5.1736 -2.4718 4.5812 10 7 7.2962 -1.9974 4.1435 11 6 7.7186 -2.6518 5.2718 12 1 6.9985 -3.1237 5.9238 13 6 9.0732 -2.7088 5.5758 14 7 9.4781 -3.3364 6.6570 15 14 10.3187 -1.8932 4.4477 16 1 10.5344 -0.4893 4.8811 17 1 11.6043 -2.6338 4.5117 18 1 9.8079 -1.9078 3.0534 19 7 2.0184 -0.6906 -1.1961 20 6 2.1472 -0.0183 -2.3571 21 8 1.8578 1.1608 -2.4117 22 6 2.6410 -0.7159 -3.5653 23 7 2.9563 -2.0043 -3.4999 24 6 3.3978 -2.6608 -4.5494 25 6 3.5527 -2.0283 -5.7738 26 6 3.2365 -0.6854 -5.8898 27 6 2.7660 -0.0163 -4.7664 28 9 2.4400 1.2930 -4.8345 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4369 1.3574 36 1 3.6166 -0.9396 3.3458 37 1 5.9659 -1.6872 1.7299 38 1 5.8204 -0.1768 2.6605 39 1 7.9429 -1.5732 3.5581 40 1 10.4238 -3.3765 6.8690 41 1 2.2491 -1.6318 -1.1525 42 1 3.6442 -3.7082 -4.4567 43 1 3.9168 -2.5783 -6.6290 44 1 3.3484 -0.1710 -6.8328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699154492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:11 Heat of formation + Delta-G solvation = -105.826167 kcal Electronic energy + Delta-G solvation = -27979.659577 eV Core-core repulsion = 23652.419182 eV Total energy + Delta-G solvation = -4327.240396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.07614 -41.58568 -40.37671 -40.20250 -37.99380 -36.34827 -35.75962 -33.96046 -33.74991 -32.69409 -31.81671 -30.35267 -27.90453 -26.19789 -25.55855 -24.57222 -23.38097 -22.46607 -21.62466 -21.28287 -20.28452 -19.30185 -18.71602 -18.17882 -17.82577 -17.37443 -17.14227 -17.00777 -16.63893 -16.49153 -15.96211 -15.77296 -15.42689 -15.16411 -15.11389 -14.90324 -14.78162 -14.55759 -14.35992 -14.21160 -14.06848 -13.91039 -13.60746 -13.48890 -13.26667 -12.98346 -12.84260 -12.42259 -12.25924 -12.14507 -11.97900 -11.81528 -11.52263 -11.45901 -11.03036 -10.71775 -10.45865 -10.30392 -10.25731 -10.02032 -9.36152 -8.41766 -6.02675 -0.60171 -0.03747 1.30047 1.34900 1.44036 1.59846 1.94011 1.94727 2.22434 2.63653 2.68238 2.89314 3.05712 3.14463 3.34116 3.60828 3.64834 3.87710 3.91443 4.00300 4.07017 4.17832 4.35469 4.37956 4.45772 4.47285 4.56169 4.58658 4.66852 4.79459 4.80483 4.87898 4.92266 5.04182 5.18321 5.28450 5.45677 5.49081 5.52085 5.89234 6.02271 6.31161 6.38012 6.58927 6.62537 6.87113 7.05528 7.38641 7.94724 8.75812 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.002138 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.351803 B =13096.071292 C =14435.086646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.063 3.937 6 N -0.683 5.683 7 C 0.061 3.939 8 C 0.449 3.551 9 O -0.613 6.613 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.056 0.944 13 C -0.015 4.015 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.232 1.232 19 N -0.692 5.692 20 C 0.563 3.437 21 O -0.564 6.564 22 C 0.018 3.982 23 N -0.447 5.447 24 C 0.087 3.913 25 C -0.095 4.095 26 C -0.115 4.115 27 C 0.082 3.918 28 F -0.127 7.127 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.346 0.654 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.418 0.582 42 H 0.205 0.795 43 H 0.197 0.803 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 5.626 -31.949 34.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.316 5.316 7 C -0.072 4.072 8 C 0.237 3.763 9 O -0.497 6.497 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.784 3.216 16 H -0.182 1.182 17 H -0.199 1.199 18 H -0.156 1.156 19 N -0.343 5.343 20 C 0.348 3.652 21 O -0.442 6.442 22 C -0.120 4.120 23 N -0.159 5.159 24 C -0.074 4.074 25 C -0.115 4.115 26 C -0.141 4.141 27 C 0.059 3.941 28 F -0.106 7.106 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.165 0.835 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.222 0.778 43 H 0.214 0.786 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.212 5.078 -30.782 33.880 hybrid contribution 1.116 1.433 -0.304 1.841 sum -12.096 6.511 -31.086 33.986 Atomic orbital electron populations 1.22110 0.93957 1.02920 1.02517 1.21021 0.94852 0.96797 0.83211 0.90517 1.21779 0.94198 1.02335 0.96958 1.22006 0.95807 0.96065 0.92719 1.60065 1.03831 1.61273 1.06384 1.21622 0.90426 0.99465 0.95639 1.20933 0.82034 0.84364 0.88960 1.90540 1.54219 1.51015 1.53920 1.42044 1.07038 1.50845 1.23361 1.19015 0.93225 1.32209 1.01355 0.92558 1.26112 0.99092 0.97611 0.98551 1.69801 1.17307 1.43265 1.27019 0.85369 0.77740 0.78946 0.79504 1.18229 1.19891 1.15565 1.45920 1.64936 1.14971 1.08481 1.18039 0.77794 0.85756 0.83577 1.90821 1.51824 1.16400 1.85186 1.21190 1.05298 0.92209 0.93255 1.67631 1.09052 1.05411 1.33778 1.23674 0.93979 1.02185 0.87569 1.22865 0.94802 0.93208 1.00611 1.22149 0.97518 0.96222 0.98199 1.19099 0.99889 0.79424 0.95718 1.91571 1.89659 1.32558 1.96786 0.93731 0.91336 0.89938 0.89060 0.89844 0.90780 0.94868 0.83518 0.87133 0.90870 0.77513 0.91111 0.74472 0.77832 0.78571 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.15 2.68 2.57 44.99 0.12 2.79 16 3 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -2.03 5.01 30.60 0.15 -1.87 16 5 C 0.06 1.35 5.57 86.31 0.48 1.83 16 6 N -0.68 -19.92 6.12 -517.94 -3.17 -23.10 16 7 C 0.06 1.90 6.17 85.55 0.53 2.43 16 8 C 0.45 20.47 7.82 87.65 0.69 21.15 16 9 O -0.61 -34.11 15.78 -3.07 -0.05 -34.16 16 10 N -0.59 -28.14 5.09 -306.99 -1.56 -29.71 16 11 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 12 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 13 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 14 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 15 Si 0.96 38.92 27.74 68.60 1.90 40.83 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.23 -7.92 6.52 99.48 0.65 -7.28 16 19 N -0.69 -13.44 4.52 -445.26 -2.01 -15.45 16 20 C 0.56 13.63 7.77 86.83 0.67 14.30 16 21 O -0.56 -17.43 14.98 -3.81 -0.06 -17.49 16 22 C 0.02 0.36 6.75 41.90 0.28 0.64 16 23 N -0.45 -6.93 9.54 -184.79 -1.76 -8.69 16 24 C 0.09 0.65 11.18 84.86 0.95 1.60 16 25 C -0.10 -0.35 10.11 22.43 0.23 -0.12 16 26 C -0.11 -0.99 10.16 22.49 0.23 -0.76 16 27 C 0.08 1.49 7.32 22.76 0.17 1.66 16 28 F -0.13 -3.05 15.55 44.97 0.70 -2.35 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.57 7.75 -2.39 -0.02 1.55 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.35 10.63 8.43 -89.69 -0.76 9.87 16 37 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 40 H 0.28 15.40 8.31 -92.71 -0.77 14.62 16 41 H 0.42 7.16 7.93 -92.71 -0.74 6.43 16 42 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 43 H 0.20 -1.00 8.06 -2.91 -0.02 -1.02 16 44 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -85.90 382.04 -0.23 -86.13 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -1.02 Total: 37.21 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.49 Total: 22.86 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -8.21 Total: -133.03 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.11 Total: -51.65 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.70 Total: -2.35 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.83 kcal Total: -85.90 -0.23 -86.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.695 kcal (2) G-P(sol) polarization free energy of solvation -85.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds