Wall clock time and date at job start Tue Mar 31 2020 20:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47447 * 2 1 4 4 C 1.53004 * 109.46776 * 239.99659 * 2 1 3 5 5 C 1.53008 * 109.46689 * 175.00274 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99739 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00310 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47545 * 89.99653 * 15 13 11 17 17 H 1.48498 * 109.47176 * 210.00238 * 15 13 11 18 18 H 1.48507 * 109.47046 * 329.99813 * 15 13 11 19 19 N 1.46499 * 109.46933 * 120.00190 * 2 1 3 20 20 C 1.34778 * 120.00004 * 274.99442 * 19 2 1 21 21 O 1.21532 * 119.99779 * 0.02562 * 20 19 2 22 22 C 1.47996 * 120.00217 * 179.97438 * 20 19 2 23 23 N 1.32812 * 119.75097 * 0.02562 * 22 20 19 24 24 C 1.31426 * 121.66812 * 179.97438 * 23 22 20 25 25 C 1.38688 * 120.97996 * 0.02562 * 24 23 22 26 26 C 1.38444 * 119.39164 * 0.02562 * 25 24 23 27 27 C 1.38963 * 118.47271 * 359.73010 * 26 25 24 28 28 F 1.35098 * 120.50872 * 180.28480 * 27 26 25 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00423 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99722 * 1 2 3 32 32 H 1.09006 * 109.46807 * 55.00633 * 4 2 1 33 33 H 1.08995 * 109.47458 * 295.00251 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 119.99752 * 180.02562 * 14 13 11 41 41 H 0.97003 * 120.00332 * 94.99523 * 19 2 1 42 42 H 1.07995 * 119.51184 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.30080 * 180.02562 * 25 24 23 44 44 H 1.08007 * 120.76044 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0544 -1.3055 -2.5134 7 6 5.5179 -1.2220 -2.6089 8 6 5.9822 -1.9408 -3.8494 9 8 5.1734 -2.4702 -4.5820 10 7 7.2959 -1.9946 -4.1452 11 6 7.7184 -2.6491 -5.2734 12 1 6.9984 -3.1218 -5.9249 13 6 9.0729 -2.7050 -5.5781 14 7 9.4779 -3.3327 -6.6593 15 14 10.3184 -1.8891 -4.4501 16 1 10.7640 -2.8608 -3.4194 17 1 11.4887 -1.4409 -5.2468 18 1 9.6926 -0.7167 -3.7874 19 7 2.0183 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8577 1.1608 2.4118 22 6 2.6398 -0.7161 3.5657 23 7 2.9541 -2.0048 3.5005 24 6 3.3956 -2.6613 4.5500 25 6 3.5505 -2.0288 5.7745 26 6 3.2343 -0.6860 5.8904 27 6 2.7746 -0.0140 4.7642 28 9 2.4596 1.2981 4.8294 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7515 -1.7716 -1.2056 34 1 3.9993 -1.0729 -0.4260 35 1 3.8532 0.4369 -1.3573 36 1 3.7449 -2.2657 -2.5286 37 1 5.8195 -0.1758 -2.6614 38 1 5.9664 -1.6858 -1.7304 39 1 7.9427 -1.5709 -3.5594 40 1 10.4235 -3.3720 -6.8717 41 1 2.2489 -1.6319 1.1526 42 1 3.6405 -3.7091 4.4578 43 1 3.9145 -2.5788 6.6297 44 1 3.3470 -0.1713 6.8332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699154493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:14 Heat of formation + Delta-G solvation = -76.263085 kcal Electronic energy + Delta-G solvation = -27986.022966 eV Core-core repulsion = 23660.064522 eV Total energy + Delta-G solvation = -4325.958444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39868 -40.98303 -39.59430 -38.48604 -37.00407 -35.08003 -33.88349 -33.43080 -32.02823 -31.65777 -31.16130 -29.32800 -26.39773 -25.56929 -24.17468 -23.87993 -22.42611 -21.67498 -20.84027 -19.37414 -18.70248 -18.29796 -18.13940 -17.62894 -16.54846 -16.44356 -16.13453 -15.99872 -15.57388 -15.12551 -14.93726 -14.69000 -14.40597 -14.28467 -14.02798 -13.85878 -13.73127 -13.71599 -13.44977 -13.03185 -12.97996 -12.72847 -12.45618 -12.28950 -12.13412 -11.73230 -11.40265 -11.19811 -11.14349 -11.01425 -10.74684 -10.61606 -10.58872 -10.12184 -9.96951 -9.64837 -9.56566 -9.34459 -8.57760 -8.18849 -8.12112 -6.30488 -3.81812 -0.08099 0.38374 2.26406 2.63495 3.03599 3.07068 3.15416 3.18535 3.42359 3.57031 3.75234 4.00349 4.01938 4.10986 4.15224 4.19733 4.65950 4.70843 4.77003 4.84132 4.99238 5.09480 5.13765 5.20684 5.22702 5.25016 5.32647 5.49719 5.51133 5.63334 5.71499 5.82212 5.86670 5.88532 5.91508 5.97736 6.06016 6.24591 6.92044 7.10197 7.22973 7.58349 7.60226 7.82674 8.15359 8.60668 8.95691 9.43289 9.83700 10.82670 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002138 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.114728 B =13095.403945 C =14423.595249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.125 4.125 5 C 0.058 3.942 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.701 5.701 20 C 0.569 3.431 21 O -0.521 6.521 22 C 0.045 3.955 23 N -0.431 5.431 24 C 0.089 3.911 25 C -0.118 4.118 26 C -0.119 4.119 27 C 0.110 3.890 28 F -0.104 7.104 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.410 0.590 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 4.040 29.115 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.163 4.163 5 C -0.071 4.071 6 N -0.301 5.301 7 C -0.085 4.085 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.353 5.353 20 C 0.353 3.647 21 O -0.396 6.396 22 C -0.094 4.094 23 N -0.142 5.142 24 C -0.072 4.072 25 C -0.138 4.138 26 C -0.146 4.146 27 C 0.087 3.913 28 F -0.082 7.082 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.190 0.810 43 H 0.170 0.830 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.462 4.656 27.223 31.176 hybrid contribution 1.747 0.116 2.410 2.979 sum -12.716 4.772 29.633 32.597 Atomic orbital electron populations 1.22161 0.94749 1.02377 1.02756 1.21093 0.94293 0.97750 0.83176 0.88945 1.21883 0.95777 1.01460 0.97166 1.21980 0.94413 0.99778 0.90944 1.60051 1.09452 1.21879 1.38731 1.21701 0.88858 1.01275 0.96636 1.19714 0.82854 0.85550 0.88270 1.90560 1.52899 1.49332 1.51842 1.42215 1.05996 1.50596 1.24273 1.19436 0.93482 1.30146 1.00258 0.86271 1.25042 0.96997 0.97481 0.96686 1.69625 1.16250 1.41820 1.24476 0.86668 0.81962 0.79775 0.80974 1.19682 1.20161 1.19468 1.45950 1.65699 1.14742 1.08897 1.17649 0.78385 0.86073 0.82639 1.90865 1.49692 1.14662 1.84403 1.21437 1.03034 0.91198 0.93730 1.67640 1.08216 1.06236 1.32082 1.22965 0.95555 1.00896 0.87734 1.22363 0.97459 0.94098 0.99919 1.21768 0.98858 0.95458 0.98474 1.18678 0.98280 0.79870 0.94424 1.91639 1.89339 1.30631 1.96637 0.92266 0.92166 0.91086 0.88831 0.91092 0.95473 0.91056 0.83074 0.89531 0.93852 0.79696 0.91628 0.75323 0.80969 0.82967 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 4 C -0.12 -1.18 5.01 -26.72 -0.13 -1.31 16 5 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 6 N -0.67 -10.30 6.12 -115.05 -0.70 -11.00 16 7 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 8 C 0.45 10.34 7.82 -10.99 -0.09 10.26 16 9 O -0.56 -15.27 15.78 5.55 0.09 -15.18 16 10 N -0.59 -14.25 5.09 -10.97 -0.06 -14.30 16 11 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 14 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 15 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 19 N -0.70 -6.71 4.52 -54.70 -0.25 -6.96 16 20 C 0.57 6.60 7.77 -12.26 -0.10 6.51 16 21 O -0.52 -7.60 14.98 5.34 0.08 -7.52 16 22 C 0.05 0.45 6.75 -82.95 -0.56 -0.11 16 23 N -0.43 -3.54 9.54 -9.76 -0.09 -3.63 16 24 C 0.09 0.46 11.18 -17.56 -0.20 0.26 16 25 C -0.12 -0.44 10.11 -39.34 -0.40 -0.84 16 26 C -0.12 -0.65 10.16 -39.24 -0.40 -1.04 16 27 C 0.11 1.01 7.32 -38.82 -0.28 0.72 16 28 F -0.10 -1.18 15.55 2.25 0.04 -1.15 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.30 7.75 -51.93 -0.40 -0.10 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.35 5.48 8.43 -39.29 -0.33 5.14 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.41 3.47 7.93 -40.82 -0.32 3.15 16 42 H 0.17 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.16 0.45 8.06 -52.48 -0.42 0.02 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -36.01 382.04 -7.25 -43.25 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.89 Total: 12.84 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.27 Total: 8.21 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.33 Total: -60.99 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.01 -7.25 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.009 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds