Wall clock time and date at job start Tue Mar 31 2020 20:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47447 * 2 1 4 4 C 1.53004 * 109.46776 * 239.99659 * 2 1 3 5 5 C 1.53008 * 109.46689 * 175.00274 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99739 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00310 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47545 * 89.99653 * 15 13 11 17 17 H 1.48498 * 109.47176 * 210.00238 * 15 13 11 18 18 H 1.48507 * 109.47046 * 329.99813 * 15 13 11 19 19 N 1.46499 * 109.46933 * 120.00190 * 2 1 3 20 20 C 1.34778 * 120.00004 * 274.99442 * 19 2 1 21 21 O 1.21532 * 119.99779 * 0.02562 * 20 19 2 22 22 C 1.47996 * 120.00217 * 179.97438 * 20 19 2 23 23 N 1.32812 * 119.75097 * 0.02562 * 22 20 19 24 24 C 1.31426 * 121.66812 * 179.97438 * 23 22 20 25 25 C 1.38688 * 120.97996 * 0.02562 * 24 23 22 26 26 C 1.38444 * 119.39164 * 0.02562 * 25 24 23 27 27 C 1.38963 * 118.47271 * 359.73010 * 26 25 24 28 28 F 1.35098 * 120.50872 * 180.28480 * 27 26 25 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00423 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99722 * 1 2 3 32 32 H 1.09006 * 109.46807 * 55.00633 * 4 2 1 33 33 H 1.08995 * 109.47458 * 295.00251 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 119.99752 * 180.02562 * 14 13 11 41 41 H 0.97003 * 120.00332 * 94.99523 * 19 2 1 42 42 H 1.07995 * 119.51184 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.30080 * 180.02562 * 25 24 23 44 44 H 1.08007 * 120.76044 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0544 -1.3055 -2.5134 7 6 5.5179 -1.2220 -2.6089 8 6 5.9822 -1.9408 -3.8494 9 8 5.1734 -2.4702 -4.5820 10 7 7.2959 -1.9946 -4.1452 11 6 7.7184 -2.6491 -5.2734 12 1 6.9984 -3.1218 -5.9249 13 6 9.0729 -2.7050 -5.5781 14 7 9.4779 -3.3327 -6.6593 15 14 10.3184 -1.8891 -4.4501 16 1 10.7640 -2.8608 -3.4194 17 1 11.4887 -1.4409 -5.2468 18 1 9.6926 -0.7167 -3.7874 19 7 2.0183 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8577 1.1608 2.4118 22 6 2.6398 -0.7161 3.5657 23 7 2.9541 -2.0048 3.5005 24 6 3.3956 -2.6613 4.5500 25 6 3.5505 -2.0288 5.7745 26 6 3.2343 -0.6860 5.8904 27 6 2.7746 -0.0140 4.7642 28 9 2.4596 1.2981 4.8294 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7515 -1.7716 -1.2056 34 1 3.9993 -1.0729 -0.4260 35 1 3.8532 0.4369 -1.3573 36 1 3.7449 -2.2657 -2.5286 37 1 5.8195 -0.1758 -2.6614 38 1 5.9664 -1.6858 -1.7304 39 1 7.9427 -1.5709 -3.5594 40 1 10.4235 -3.3720 -6.8717 41 1 2.2489 -1.6319 1.1526 42 1 3.6405 -3.7091 4.4578 43 1 3.9145 -2.5788 6.6297 44 1 3.3470 -0.1713 6.8332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699154493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:13 Heat of formation + Delta-G solvation = -105.816747 kcal Electronic energy + Delta-G solvation = -27987.304509 eV Core-core repulsion = 23660.064522 eV Total energy + Delta-G solvation = -4327.239987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08530 -41.59679 -40.38169 -40.20798 -38.00005 -36.34643 -35.75798 -33.97120 -33.74939 -32.70480 -31.82463 -30.35364 -27.90260 -26.20583 -25.56117 -24.58390 -23.38868 -22.45617 -21.66059 -21.27807 -20.27798 -19.31071 -18.72440 -18.19067 -17.81586 -17.38624 -17.16627 -16.97826 -16.64584 -16.50431 -15.95242 -15.76143 -15.40899 -15.30141 -15.00174 -14.97546 -14.84844 -14.51520 -14.38643 -14.20486 -14.04111 -13.86972 -13.58032 -13.49902 -13.29198 -12.98623 -12.84208 -12.42510 -12.29452 -12.09567 -11.98400 -11.83697 -11.52047 -11.46685 -11.04107 -10.73362 -10.46912 -10.31037 -10.25647 -10.03406 -9.34350 -8.41761 -6.02692 -0.61337 -0.04960 1.30311 1.34707 1.44110 1.59009 1.93418 1.94099 2.22472 2.62409 2.68465 2.88280 3.04407 3.14486 3.34798 3.59832 3.63795 3.86369 3.86637 3.99484 4.14945 4.18340 4.34415 4.40092 4.40743 4.48104 4.54766 4.58261 4.66971 4.78346 4.79284 4.90723 4.92556 5.04889 5.17340 5.28330 5.45427 5.48115 5.52083 5.89410 6.02564 6.29683 6.39911 6.58983 6.60938 6.87118 7.04767 7.38689 7.94759 8.75820 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002138 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.114728 B =13095.403945 C =14423.595249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.685 5.685 7 C 0.061 3.939 8 C 0.449 3.551 9 O -0.613 6.613 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.056 0.944 13 C -0.015 4.015 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.234 1.234 19 N -0.691 5.691 20 C 0.563 3.437 21 O -0.563 6.563 22 C 0.018 3.982 23 N -0.447 5.447 24 C 0.087 3.913 25 C -0.095 4.095 26 C -0.115 4.115 27 C 0.082 3.918 28 F -0.127 7.127 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.347 0.653 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.417 0.583 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 3.946 32.987 35.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.065 4.065 6 N -0.317 5.317 7 C -0.071 4.071 8 C 0.237 3.763 9 O -0.497 6.497 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.157 1.157 19 N -0.343 5.343 20 C 0.348 3.652 21 O -0.442 6.442 22 C -0.120 4.120 23 N -0.159 5.159 24 C -0.074 4.074 25 C -0.115 4.115 26 C -0.141 4.141 27 C 0.059 3.941 28 F -0.106 7.106 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.222 0.778 43 H 0.214 0.786 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.160 4.561 31.106 34.082 hybrid contribution 1.258 -0.013 1.206 1.743 sum -11.902 4.548 32.312 34.733 Atomic orbital electron populations 1.22107 0.93963 1.02931 1.02484 1.21018 0.94846 0.96917 0.83106 0.90518 1.21776 0.94359 1.02098 0.96962 1.22000 0.95571 0.99226 0.89748 1.60049 1.08639 1.22029 1.41004 1.21619 0.89958 1.01618 0.93928 1.20937 0.81951 0.84098 0.89315 1.90539 1.54131 1.51076 1.53958 1.42046 1.07041 1.50783 1.23421 1.19017 0.93202 1.31908 1.01677 0.92561 1.26115 0.99101 0.97629 0.98527 1.69804 1.17294 1.43336 1.26963 0.85367 0.77890 0.79765 0.78522 1.17952 1.20007 1.15728 1.45905 1.65012 1.14886 1.08491 1.18042 0.77813 0.85767 0.83581 1.90826 1.51731 1.16423 1.85179 1.21189 1.05284 0.92185 0.93300 1.67621 1.09106 1.05426 1.33726 1.23674 0.93996 1.02172 0.87565 1.22867 0.94751 0.93217 1.00656 1.22151 0.97589 0.96216 0.98143 1.19103 0.99960 0.79318 0.95742 1.91572 1.89902 1.32294 1.96803 0.91255 0.93743 0.90039 0.88969 0.90009 0.94440 0.91146 0.83416 0.87357 0.90647 0.77510 0.91115 0.74560 0.77786 0.78576 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.48 71.98 0.68 -1.91 16 2 C 0.15 2.67 2.57 44.99 0.12 2.79 16 3 H 0.08 1.68 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.01 5.01 30.60 0.15 -1.86 16 5 C 0.06 1.36 5.57 86.31 0.48 1.84 16 6 N -0.68 -19.97 6.12 -517.91 -3.17 -23.14 16 7 C 0.06 1.91 6.17 85.56 0.53 2.44 16 8 C 0.45 20.47 7.82 87.66 0.69 21.16 16 9 O -0.61 -34.13 15.78 -3.05 -0.05 -34.18 16 10 N -0.59 -28.15 5.09 -307.00 -1.56 -29.71 16 11 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 12 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 13 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 14 N -0.93 -56.40 13.96 21.66 0.30 -56.10 16 15 Si 0.96 38.93 27.74 68.60 1.90 40.83 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 19 N -0.69 -13.03 4.52 -445.26 -2.01 -15.05 16 20 C 0.56 13.44 7.77 86.83 0.67 14.12 16 21 O -0.56 -17.37 14.98 -3.82 -0.06 -17.43 16 22 C 0.02 0.35 6.75 41.90 0.28 0.63 16 23 N -0.45 -6.61 9.54 -184.79 -1.76 -8.38 16 24 C 0.09 0.60 11.18 84.86 0.95 1.55 16 25 C -0.10 -0.31 10.11 22.43 0.23 -0.08 16 26 C -0.11 -0.95 10.16 22.49 0.23 -0.73 16 27 C 0.08 1.47 7.32 22.76 0.17 1.64 16 28 F -0.13 -3.03 15.55 44.97 0.70 -2.33 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.04 0.74 7.75 -2.39 -0.02 0.73 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.35 10.48 8.43 -89.70 -0.76 9.72 16 37 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.39 15.38 5.76 -92.71 -0.53 14.84 16 40 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.42 6.66 7.93 -92.71 -0.74 5.92 16 42 H 0.21 -0.03 8.06 -2.91 -0.02 -0.05 16 43 H 0.20 -1.07 8.06 -2.91 -0.02 -1.10 16 44 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -86.17 382.04 -0.23 -86.40 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -1.02 Total: 36.40 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 6.50 Total: 22.68 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -8.21 Total: -132.37 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.11 Total: -51.61 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.70 Total: -2.33 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -86.17 -0.23 -86.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699154493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.412 kcal (2) G-P(sol) polarization free energy of solvation -86.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds