Wall clock time and date at job start Tue Mar 31 2020 20:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47097 * 2 1 4 4 C 1.50705 * 109.47173 * 240.00653 * 2 1 3 5 5 O 1.21279 * 119.99498 * 335.26463 * 4 2 1 6 6 N 1.34778 * 120.00148 * 155.26413 * 4 2 1 7 7 C 1.46924 * 120.62934 * 355.28420 * 6 4 2 8 8 C 1.53195 * 108.77165 * 126.36970 * 7 6 4 9 9 C 1.53043 * 109.31216 * 54.63565 * 8 7 6 10 10 C 1.53041 * 109.53629 * 298.63314 * 9 8 7 11 11 C 1.53002 * 109.49365 * 181.31811 * 10 9 8 12 12 O 1.42897 * 109.47066 * 65.16556 * 11 10 9 13 13 N 1.46499 * 109.49664 * 301.41429 * 10 9 8 14 14 C 1.36940 * 120.00047 * 299.83556 * 13 10 9 15 15 H 1.07995 * 119.99915 * 0.02562 * 14 13 10 16 16 C 1.38819 * 119.99926 * 179.97438 * 14 13 10 17 17 N 1.31608 * 119.99889 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99798 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46915 * 120.00188 * 18 16 14 21 21 H 1.48497 * 109.47241 * 240.00023 * 18 16 14 22 22 C 1.46920 * 120.62546 * 175.26324 * 6 4 2 23 23 C 1.50697 * 109.47748 * 120.00171 * 2 1 3 24 24 C 1.38422 * 122.53997 * 239.74286 * 23 2 1 25 25 C 1.33393 * 114.91837 * 179.75871 * 24 23 2 26 26 S 1.75890 * 109.59169 * 0.47344 * 25 24 23 27 27 C 1.33388 * 122.53485 * 60.02103 * 23 2 1 28 28 H 1.08997 * 109.46878 * 184.97283 * 1 2 3 29 29 H 1.09005 * 109.47020 * 304.97022 * 1 2 3 30 30 H 1.08998 * 109.47177 * 64.97163 * 1 2 3 31 31 H 1.08997 * 109.58618 * 246.15456 * 7 6 4 32 32 H 1.08999 * 109.58879 * 6.58473 * 7 6 4 33 33 H 1.08999 * 109.49728 * 174.58882 * 8 7 6 34 34 H 1.09000 * 109.49801 * 294.64891 * 8 7 6 35 35 H 1.08997 * 109.45551 * 178.61270 * 9 8 7 36 36 H 1.08998 * 109.45756 * 58.65563 * 9 8 7 37 37 H 1.09001 * 109.46391 * 185.15949 * 11 10 9 38 38 H 1.08995 * 109.47112 * 305.15896 * 11 10 9 39 39 H 0.96704 * 113.99725 * 180.02562 * 12 11 10 40 40 H 0.97001 * 119.99904 * 119.84088 * 13 10 9 41 41 H 0.97006 * 120.00215 * 180.02562 * 17 16 14 42 42 H 1.09009 * 109.58409 * 113.84810 * 22 6 4 43 43 H 1.08999 * 109.59194 * 353.41591 * 22 6 4 44 44 H 1.08001 * 122.54095 * 359.97438 * 24 23 2 45 45 H 1.07996 * 125.20658 * 180.20870 * 25 24 23 46 46 H 1.07995 * 125.20657 * 0.02593 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.3350 -1.5357 -1.7814 6 7 3.2565 -0.4283 -1.7190 7 6 4.0711 0.6408 -1.1256 8 6 5.4425 0.0675 -0.7548 9 6 6.0675 -0.5878 -1.9886 10 6 5.1761 -1.7372 -2.4645 11 6 5.8182 -2.4125 -3.6780 12 8 7.0464 -3.0287 -3.2858 13 7 5.0213 -2.7152 -1.3848 14 6 6.1221 -3.3459 -0.8693 15 1 7.1043 -3.1221 -1.2584 16 6 5.9754 -4.2723 0.1542 17 7 4.7785 -4.5446 0.6287 18 14 7.4771 -5.1322 0.8578 19 1 8.6956 -4.6529 0.1573 20 1 7.5879 -4.8279 2.3072 21 1 7.3415 -6.5988 0.6689 22 6 3.8017 -1.1844 -2.8545 23 6 2.0325 -0.7104 1.2304 24 6 2.8351 -0.0905 2.1725 25 6 3.1877 -0.8594 3.2038 26 16 2.4989 -2.4655 3.0046 27 6 1.7419 -1.9858 1.4913 28 1 -0.3633 -1.0238 0.0891 29 1 -0.3633 0.5890 0.8422 30 1 -0.3633 0.4348 -0.9311 31 1 4.1955 1.4485 -1.8468 32 1 3.5795 1.0205 -0.2299 33 1 6.0894 0.8709 -0.4025 34 1 5.3249 -0.6767 0.0328 35 1 7.0540 -0.9748 -1.7336 36 1 6.1621 0.1517 -2.7838 37 1 5.1412 -3.1703 -4.0724 38 1 6.0156 -1.6658 -4.4471 39 1 7.5094 -3.4769 -4.0068 40 1 4.1391 -2.9160 -1.0351 41 1 4.6760 -5.1916 1.3441 42 1 3.9042 -0.5255 -3.7168 43 1 3.1324 -2.0091 -3.0996 44 1 3.1490 0.9389 2.0813 45 1 3.8055 -0.5453 4.0321 46 1 1.1350 -2.6261 0.8684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700237952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:12 Heat of formation + Delta-G solvation = -24.848337 kcal Electronic energy + Delta-G solvation = -29801.237436 eV Core-core repulsion = 26011.428927 eV Total energy + Delta-G solvation = -3789.808508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26779 -38.29154 -37.18652 -35.69750 -33.75109 -32.68536 -31.82663 -31.19731 -28.65872 -28.35434 -25.93278 -25.29734 -24.39472 -23.42109 -22.21125 -21.62745 -19.33546 -18.43150 -17.80945 -17.39692 -17.24631 -16.84718 -16.23597 -15.40615 -15.09083 -14.66251 -14.23296 -14.10805 -13.82658 -13.59100 -13.48551 -13.23558 -12.98742 -12.75434 -12.56551 -12.35684 -12.20915 -12.00269 -11.93291 -11.76617 -11.69894 -11.35181 -11.29492 -10.94462 -10.74918 -10.65150 -10.31900 -10.26687 -10.16035 -10.01587 -9.81702 -9.44019 -9.36075 -8.91478 -8.67291 -8.25975 -8.14095 -7.79260 -6.74693 -5.50010 -2.76114 1.54002 2.22373 2.53782 2.90504 3.24415 3.41943 3.54483 3.61609 3.63324 4.74962 4.84455 4.94728 5.02067 5.16791 5.25934 5.39787 5.43263 5.50367 5.56686 5.61907 5.66331 5.72880 5.82069 5.86184 5.92013 5.94024 5.99950 6.00601 6.07135 6.10799 6.18129 6.19896 6.31675 6.42539 6.46646 6.59788 6.78307 6.82970 6.87382 6.95480 7.04690 7.16488 7.82389 8.18877 8.40452 8.59693 8.66561 9.79060 10.30192 10.67777 11.71459 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.006671 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.648391 B = 4196.432850 C = 5941.511707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.045 4.045 3 H 0.093 0.907 4 C 0.529 3.471 5 O -0.543 6.543 6 N -0.594 5.594 7 C 0.109 3.891 8 C -0.127 4.127 9 C -0.116 4.116 10 C 0.189 3.811 11 C 0.074 3.926 12 O -0.534 6.534 13 N -0.701 5.701 14 C -0.205 4.205 15 H 0.090 0.910 16 C -0.020 4.020 17 N -0.927 5.927 18 Si 0.895 3.105 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.299 1.299 22 C 0.116 3.884 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.225 4.225 26 S 0.143 5.857 27 C -0.171 4.171 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.349 0.651 40 H 0.384 0.616 41 H 0.247 0.753 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.156 0.844 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 13.112 -1.331 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.069 4.069 3 H 0.111 0.889 4 C 0.316 3.684 5 O -0.421 6.421 6 N -0.326 5.326 7 C -0.013 4.013 8 C -0.165 4.165 9 C -0.156 4.156 10 C 0.096 3.904 11 C -0.007 4.007 12 O -0.336 6.336 13 N -0.341 5.341 14 C -0.336 4.336 15 H 0.107 0.893 16 C -0.214 4.214 17 N -0.577 5.577 18 Si 0.728 3.272 19 H -0.209 1.209 20 H -0.227 1.227 21 H -0.226 1.226 22 C -0.007 4.007 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.361 4.361 26 S 0.409 5.591 27 C -0.307 4.307 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.194 0.806 40 H 0.218 0.782 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.148 0.852 45 H 0.174 0.826 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.035 11.476 -0.098 12.533 hybrid contribution 1.068 0.359 -0.912 1.449 sum -3.967 11.835 -1.010 12.523 Atomic orbital electron populations 1.21638 0.92250 1.03176 1.01449 1.19936 0.97418 0.99080 0.90466 0.88900 1.20401 0.80941 0.82530 0.84486 1.90655 1.56306 1.34610 1.60490 1.47801 1.15899 1.35563 1.33330 1.21800 0.92919 0.88919 0.97709 1.21784 0.93999 1.00306 1.00387 1.21868 1.00935 0.96750 0.96062 1.19930 0.91071 0.90093 0.89336 1.22721 0.86632 0.94757 0.96586 1.86945 1.35681 1.73921 1.37064 1.42350 1.07726 1.45265 1.38745 1.19527 0.88337 1.14797 1.10920 0.89263 1.24666 0.95761 1.00783 1.00225 1.69679 1.19767 1.37844 1.30417 0.86275 0.83151 0.79355 0.78402 1.20913 1.22681 1.22646 1.21674 0.95523 0.96063 0.87474 1.18194 1.02767 0.94282 0.97047 1.19775 1.00771 1.00762 0.94533 1.25458 1.08662 0.97490 1.04480 1.84283 1.45573 1.11469 1.17738 1.25375 1.05706 0.98442 1.01196 0.91466 0.92078 0.92420 0.92352 0.90235 0.92553 0.89074 0.90896 0.94256 0.94706 0.95993 0.80597 0.78207 0.94275 0.91969 0.89067 0.85184 0.82647 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.53 37.16 0.32 -1.32 16 2 C -0.05 -0.65 2.16 -92.92 -0.20 -0.85 16 3 H 0.09 1.09 6.18 -51.93 -0.32 0.77 16 4 C 0.53 9.28 6.50 -10.98 -0.07 9.20 16 5 O -0.54 -11.29 15.62 5.56 0.09 -11.20 16 6 N -0.59 -9.82 2.87 -172.77 -0.50 -10.31 16 7 C 0.11 1.52 6.27 -3.71 -0.02 1.50 16 8 C -0.13 -2.07 5.93 -26.61 -0.16 -2.23 16 9 C -0.12 -2.04 4.43 -26.69 -0.12 -2.16 16 10 C 0.19 3.62 0.68 -131.70 -0.09 3.53 16 11 C 0.07 1.32 6.09 37.16 0.23 1.55 16 12 O -0.53 -10.25 9.91 -35.23 -0.35 -10.60 16 13 N -0.70 -16.86 4.22 -47.12 -0.20 -17.06 16 14 C -0.20 -5.48 8.14 -15.06 -0.12 -5.61 16 15 H 0.09 2.44 5.29 -52.49 -0.28 2.16 16 16 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 17 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 18 Si 0.89 23.00 29.55 -169.99 -5.02 17.98 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 22 C 0.12 2.01 5.13 -3.71 -0.02 1.99 16 23 C -0.11 -1.74 4.56 -106.25 -0.48 -2.23 16 24 C -0.13 -1.86 9.39 -41.21 -0.39 -2.25 16 25 C -0.22 -3.44 11.23 29.04 0.33 -3.12 16 26 S 0.14 2.47 23.34 -107.50 -2.51 -0.04 16 27 C -0.17 -3.05 10.06 29.04 0.29 -2.75 16 28 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.99 4.75 -51.93 -0.25 0.74 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.90 7.53 -51.93 -0.39 1.51 16 35 H 0.07 1.47 6.98 -51.93 -0.36 1.10 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.35 5.02 9.12 45.56 0.42 5.44 16 40 H 0.38 10.36 7.65 -40.82 -0.31 10.05 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 43 H 0.09 1.79 7.03 -51.93 -0.37 1.42 16 44 H 0.13 1.55 7.93 -52.49 -0.42 1.13 16 45 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.16 3.00 7.90 -52.49 -0.41 2.59 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.40 373.83 -8.76 -41.16 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.02 Total: 16.25 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.61 Total: -5.39 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.03 Total: -53.80 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.26 Total: -21.80 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.51 Total: -0.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.40 -8.76 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700237952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.316 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds