Wall clock time and date at job start Tue Mar 31 2020 20:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47097 * 2 1 4 4 C 1.50705 * 109.47173 * 240.00653 * 2 1 3 5 5 O 1.21279 * 119.99498 * 335.26463 * 4 2 1 6 6 N 1.34778 * 120.00148 * 155.26413 * 4 2 1 7 7 C 1.46924 * 120.62934 * 355.28420 * 6 4 2 8 8 C 1.53195 * 108.77165 * 126.36970 * 7 6 4 9 9 C 1.53043 * 109.31216 * 54.63565 * 8 7 6 10 10 C 1.53041 * 109.53629 * 298.63314 * 9 8 7 11 11 C 1.53002 * 109.49365 * 181.31811 * 10 9 8 12 12 O 1.42897 * 109.47066 * 65.16556 * 11 10 9 13 13 N 1.46499 * 109.49664 * 301.41429 * 10 9 8 14 14 C 1.36940 * 120.00047 * 299.83556 * 13 10 9 15 15 H 1.07995 * 119.99915 * 0.02562 * 14 13 10 16 16 C 1.38819 * 119.99926 * 179.97438 * 14 13 10 17 17 N 1.31608 * 119.99889 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99798 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46915 * 120.00188 * 18 16 14 21 21 H 1.48497 * 109.47241 * 240.00023 * 18 16 14 22 22 C 1.46920 * 120.62546 * 175.26324 * 6 4 2 23 23 C 1.50697 * 109.47748 * 120.00171 * 2 1 3 24 24 C 1.38422 * 122.53997 * 239.74286 * 23 2 1 25 25 C 1.33393 * 114.91837 * 179.75871 * 24 23 2 26 26 S 1.75890 * 109.59169 * 0.47344 * 25 24 23 27 27 C 1.33388 * 122.53485 * 60.02103 * 23 2 1 28 28 H 1.08997 * 109.46878 * 184.97283 * 1 2 3 29 29 H 1.09005 * 109.47020 * 304.97022 * 1 2 3 30 30 H 1.08998 * 109.47177 * 64.97163 * 1 2 3 31 31 H 1.08997 * 109.58618 * 246.15456 * 7 6 4 32 32 H 1.08999 * 109.58879 * 6.58473 * 7 6 4 33 33 H 1.08999 * 109.49728 * 174.58882 * 8 7 6 34 34 H 1.09000 * 109.49801 * 294.64891 * 8 7 6 35 35 H 1.08997 * 109.45551 * 178.61270 * 9 8 7 36 36 H 1.08998 * 109.45756 * 58.65563 * 9 8 7 37 37 H 1.09001 * 109.46391 * 185.15949 * 11 10 9 38 38 H 1.08995 * 109.47112 * 305.15896 * 11 10 9 39 39 H 0.96704 * 113.99725 * 180.02562 * 12 11 10 40 40 H 0.97001 * 119.99904 * 119.84088 * 13 10 9 41 41 H 0.97006 * 120.00215 * 180.02562 * 17 16 14 42 42 H 1.09009 * 109.58409 * 113.84810 * 22 6 4 43 43 H 1.08999 * 109.59194 * 353.41591 * 22 6 4 44 44 H 1.08001 * 122.54095 * 359.97438 * 24 23 2 45 45 H 1.07996 * 125.20658 * 180.20870 * 25 24 23 46 46 H 1.07995 * 125.20657 * 0.02593 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.3350 -1.5357 -1.7814 6 7 3.2565 -0.4283 -1.7190 7 6 4.0711 0.6408 -1.1256 8 6 5.4425 0.0675 -0.7548 9 6 6.0675 -0.5878 -1.9886 10 6 5.1761 -1.7372 -2.4645 11 6 5.8182 -2.4125 -3.6780 12 8 7.0464 -3.0287 -3.2858 13 7 5.0213 -2.7152 -1.3848 14 6 6.1221 -3.3459 -0.8693 15 1 7.1043 -3.1221 -1.2584 16 6 5.9754 -4.2723 0.1542 17 7 4.7785 -4.5446 0.6287 18 14 7.4771 -5.1322 0.8578 19 1 8.6956 -4.6529 0.1573 20 1 7.5879 -4.8279 2.3072 21 1 7.3415 -6.5988 0.6689 22 6 3.8017 -1.1844 -2.8545 23 6 2.0325 -0.7104 1.2304 24 6 2.8351 -0.0905 2.1725 25 6 3.1877 -0.8594 3.2038 26 16 2.4989 -2.4655 3.0046 27 6 1.7419 -1.9858 1.4913 28 1 -0.3633 -1.0238 0.0891 29 1 -0.3633 0.5890 0.8422 30 1 -0.3633 0.4348 -0.9311 31 1 4.1955 1.4485 -1.8468 32 1 3.5795 1.0205 -0.2299 33 1 6.0894 0.8709 -0.4025 34 1 5.3249 -0.6767 0.0328 35 1 7.0540 -0.9748 -1.7336 36 1 6.1621 0.1517 -2.7838 37 1 5.1412 -3.1703 -4.0724 38 1 6.0156 -1.6658 -4.4471 39 1 7.5094 -3.4769 -4.0068 40 1 4.1391 -2.9160 -1.0351 41 1 4.6760 -5.1916 1.3441 42 1 3.9042 -0.5255 -3.7168 43 1 3.1324 -2.0091 -3.0996 44 1 3.1490 0.9389 2.0813 45 1 3.8055 -0.5453 4.0321 46 1 1.1350 -2.6261 0.8684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700237952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:11 Heat of formation + Delta-G solvation = -47.586790 kcal Electronic energy + Delta-G solvation = -29802.223449 eV Core-core repulsion = 26011.428927 eV Total energy + Delta-G solvation = -3790.794522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58829 -39.68301 -38.52944 -37.10848 -35.45239 -34.03085 -33.39340 -32.61133 -30.47814 -29.60632 -27.22833 -26.59009 -25.73740 -25.36326 -23.47623 -22.93672 -20.66773 -19.87790 -19.09435 -19.07152 -18.63922 -18.13449 -17.85703 -16.77698 -16.60310 -16.17995 -15.76944 -15.55512 -15.36598 -15.02421 -14.79139 -14.73804 -14.49913 -14.00614 -13.91894 -13.68958 -13.49963 -13.40868 -13.23276 -13.19159 -12.95757 -12.86377 -12.65853 -12.54925 -12.49083 -12.24092 -11.90720 -11.68730 -11.64137 -11.44277 -11.42778 -11.19869 -10.79005 -10.58619 -10.51393 -9.53804 -9.45522 -9.12409 -8.73357 -7.64076 -4.87921 0.25778 0.92737 1.27784 1.46020 1.48842 1.56597 1.60696 1.98939 2.18831 2.70222 3.49263 3.63513 3.76612 3.88940 3.89858 4.04380 4.10612 4.19261 4.28149 4.33334 4.36684 4.46508 4.52776 4.56804 4.59968 4.67037 4.72401 4.80704 4.85089 4.93941 4.95073 4.96672 5.06962 5.09718 5.24016 5.30963 5.36590 5.56034 5.61963 5.66949 5.68544 5.77760 6.02890 6.52827 6.56276 7.15865 7.28515 7.62089 8.32175 8.57368 9.57019 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.006671 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.648391 B = 4196.432850 C = 5941.511707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 H 0.133 0.867 4 C 0.519 3.481 5 O -0.587 6.587 6 N -0.595 5.595 7 C 0.109 3.891 8 C -0.122 4.122 9 C -0.109 4.109 10 C 0.177 3.823 11 C 0.075 3.925 12 O -0.563 6.563 13 N -0.708 5.708 14 C -0.177 4.177 15 H 0.088 0.912 16 C -0.081 4.081 17 N -0.954 5.954 18 Si 0.943 3.057 19 H -0.275 1.275 20 H -0.306 1.306 21 H -0.311 1.311 22 C 0.119 3.881 23 C -0.097 4.097 24 C -0.125 4.125 25 C -0.219 4.219 26 S 0.089 5.911 27 C -0.199 4.199 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.372 0.628 40 H 0.364 0.636 41 H 0.235 0.765 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.172 0.828 45 H 0.182 0.818 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 17.459 -2.454 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.064 4.064 3 H 0.151 0.849 4 C 0.308 3.692 5 O -0.468 6.468 6 N -0.326 5.326 7 C -0.013 4.013 8 C -0.160 4.160 9 C -0.149 4.149 10 C 0.085 3.915 11 C -0.005 4.005 12 O -0.368 6.368 13 N -0.347 5.347 14 C -0.309 4.309 15 H 0.106 0.894 16 C -0.273 4.273 17 N -0.607 5.607 18 Si 0.778 3.222 19 H -0.200 1.200 20 H -0.235 1.235 21 H -0.240 1.240 22 C -0.004 4.004 23 C -0.110 4.110 24 C -0.155 4.155 25 C -0.355 4.355 26 S 0.355 5.645 27 C -0.336 4.336 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.219 0.781 40 H 0.196 0.804 41 H 0.045 0.955 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.189 0.811 45 H 0.199 0.801 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.767 15.872 -1.268 16.363 hybrid contribution 0.748 -0.936 -0.706 1.391 sum -3.020 14.937 -1.974 15.366 Atomic orbital electron populations 1.21623 0.91336 1.02156 1.03036 1.20056 0.98238 1.00268 0.87850 0.84911 1.21029 0.81077 0.82098 0.85002 1.90637 1.57735 1.36495 1.61896 1.47957 1.15801 1.35792 1.33020 1.22056 0.90948 0.88630 0.99654 1.21699 0.96178 0.99849 0.98288 1.21759 0.98667 0.96656 0.97782 1.20346 0.92959 0.89826 0.88341 1.22647 0.85918 0.95348 0.96619 1.86823 1.36250 1.74525 1.39208 1.42448 1.05894 1.46348 1.39980 1.19671 0.88945 1.13051 1.09281 0.89423 1.25213 0.97376 1.02805 1.01878 1.69827 1.20947 1.38823 1.31112 0.85466 0.81513 0.77796 0.77444 1.19972 1.23465 1.23968 1.21606 0.93515 0.96138 0.89149 1.18492 1.01611 0.93392 0.97522 1.20147 0.99614 1.02386 0.93363 1.25800 1.08472 0.95581 1.05633 1.84401 1.47114 1.14502 1.18468 1.25254 1.07252 0.99504 1.01560 0.94122 0.89430 0.91553 0.88249 0.88302 0.89642 0.94108 0.93851 0.90415 0.96109 0.91698 0.78084 0.80405 0.95537 0.88023 0.92318 0.81062 0.80119 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.53 71.98 0.61 -2.37 16 2 C -0.04 -1.07 2.16 -12.29 -0.03 -1.10 16 3 H 0.13 2.41 6.18 -2.38 -0.01 2.40 16 4 C 0.52 17.67 6.50 87.66 0.57 18.24 16 5 O -0.59 -25.05 15.62 -3.03 -0.05 -25.10 16 6 N -0.59 -18.15 2.87 -818.90 -2.35 -20.50 16 7 C 0.11 2.49 6.27 86.36 0.54 3.03 16 8 C -0.12 -3.55 5.93 30.67 0.18 -3.37 16 9 C -0.11 -3.46 4.43 30.62 0.14 -3.32 16 10 C 0.18 6.45 0.68 3.68 0.00 6.45 16 11 C 0.08 2.51 6.09 71.98 0.44 2.95 16 12 O -0.56 -20.72 9.91 -148.98 -1.48 -22.20 16 13 N -0.71 -34.49 4.22 -302.99 -1.28 -35.76 16 14 C -0.18 -9.60 8.14 84.03 0.68 -8.92 16 15 H 0.09 4.78 5.29 -2.91 -0.02 4.77 16 16 C -0.08 -4.73 5.50 84.87 0.47 -4.27 16 17 N -0.95 -58.48 13.06 21.65 0.28 -58.20 16 18 Si 0.94 48.66 29.55 68.60 2.03 50.69 16 19 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 21 H -0.31 -16.47 7.11 99.48 0.71 -15.77 16 22 C 0.12 3.89 5.13 86.36 0.44 4.34 16 23 C -0.10 -2.96 4.56 -20.92 -0.10 -3.06 16 24 C -0.12 -3.31 9.39 21.22 0.20 -3.11 16 25 C -0.22 -6.42 11.23 66.72 0.75 -5.67 16 26 S 0.09 3.24 23.34 -56.49 -1.32 1.92 16 27 C -0.20 -7.48 10.06 66.72 0.67 -6.81 16 28 H 0.04 1.19 7.46 -2.39 -0.02 1.17 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.88 4.75 -2.39 -0.01 1.87 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.63 7.53 -2.39 -0.02 1.61 16 35 H 0.04 1.64 6.98 -2.39 -0.02 1.62 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.37 10.00 9.12 -74.05 -0.68 9.32 16 40 H 0.36 20.43 7.65 -92.71 -0.71 19.72 16 41 H 0.24 14.50 8.31 -92.70 -0.77 13.73 16 42 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.06 2.32 7.03 -2.39 -0.02 2.30 16 44 H 0.17 3.12 7.93 -2.91 -0.02 3.09 16 45 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 46 H 0.13 5.60 7.90 -2.91 -0.02 5.57 16 Total: -1.00 -76.27 373.83 1.05 -75.22 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.37 Total: 40.92 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.58 Total: -6.99 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.34 Total: -114.46 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -1.52 Total: -47.29 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.69 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.32 Total: 1.92 kcal Total: -76.27 1.05 -75.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700237952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds