Wall clock time and date at job start Tue Mar 31 2020 20:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47166 * 2 1 4 4 C 1.53002 * 109.47072 * 120.00268 * 2 1 3 5 5 N 1.46498 * 109.47034 * 175.31490 * 4 2 1 6 6 C 1.34774 * 119.99833 * 175.18498 * 5 4 2 7 7 O 1.21531 * 120.00050 * 0.02562 * 6 5 4 8 8 C 1.48049 * 119.99910 * 179.97438 * 6 5 4 9 9 C 1.39384 * 119.69454 * 179.97438 * 8 6 5 10 10 C 1.38459 * 119.09925 * 180.02562 * 9 8 6 11 11 C 1.38898 * 118.46613 * 359.97438 * 10 9 8 12 12 F 1.35108 * 120.35240 * 180.02562 * 11 10 9 13 13 C 1.38878 * 119.29989 * 359.97438 * 11 10 9 14 14 N 1.31463 * 120.85737 * 0.03024 * 13 11 10 15 15 N 1.46901 * 109.46799 * 239.99934 * 2 1 3 16 16 C 1.46900 * 110.99839 * 72.50163 * 15 2 1 17 17 C 1.46896 * 111.00541 * 308.53998 * 15 2 1 18 18 C 1.50691 * 109.47363 * 190.00075 * 17 15 2 19 19 O 1.21293 * 120.00211 * 359.97438 * 18 17 15 20 20 N 1.34780 * 120.00114 * 180.02562 * 18 17 15 21 21 C 1.37097 * 119.99852 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00399 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99693 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46874 * 90.00105 * 25 23 21 27 27 H 1.48501 * 109.46834 * 209.99822 * 25 23 21 28 28 H 1.48498 * 109.46971 * 330.00099 * 25 23 21 29 29 H 1.08999 * 109.46950 * 59.99553 * 1 2 3 30 30 H 1.08996 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46898 * 299.99624 * 1 2 3 32 32 H 1.09004 * 109.46814 * 55.31450 * 4 2 1 33 33 H 1.09000 * 109.46863 * 295.31552 * 4 2 1 34 34 H 0.96995 * 120.00134 * 355.19460 * 5 4 2 35 35 H 1.08007 * 120.44882 * 359.97438 * 9 8 6 36 36 H 1.07996 * 120.76638 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.57426 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.47636 * 53.75752 * 16 15 2 39 39 H 1.09000 * 109.46913 * 173.76089 * 16 15 2 40 40 H 1.09007 * 109.46786 * 293.75623 * 16 15 2 41 41 H 1.09001 * 109.47065 * 310.00699 * 17 15 2 42 42 H 1.09005 * 109.47000 * 69.99748 * 17 15 2 43 43 H 0.96999 * 119.99717 * 0.02562 * 20 18 17 44 44 H 0.96995 * 119.99922 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5007 -0.8198 1.1941 6 6 4.1813 -1.3331 2.2380 7 8 3.5833 -1.7148 3.2248 8 6 5.6573 -1.4332 2.1821 9 6 6.3549 -1.9646 3.2655 10 6 7.7352 -2.0519 3.2003 11 6 8.3733 -1.6042 2.0507 12 9 9.7186 -1.6720 1.9461 13 6 7.6137 -1.0871 1.0093 14 7 6.3041 -1.0168 1.1002 15 7 2.0197 -0.6925 -1.1995 16 6 1.8063 0.1233 -2.4023 17 6 1.3896 -2.0121 -1.3397 18 6 2.0860 -2.7882 -2.4275 19 8 3.0155 -2.2910 -3.0274 20 7 1.6753 -4.0347 -2.7346 21 6 2.3086 -4.7406 -3.7246 22 1 3.1367 -4.2981 -4.2582 23 6 1.8848 -6.0255 -4.0416 24 7 0.8774 -6.5641 -3.3920 25 14 2.7481 -6.9876 -5.3901 26 1 3.8660 -7.7689 -4.8026 27 1 1.7817 -7.9135 -6.0337 28 1 3.2827 -6.0454 -6.4057 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6098 -1.7219 1.2921 33 1 1.7468 -0.1613 2.1372 34 1 3.9779 -0.5154 0.4065 35 1 5.8259 -2.3030 4.1443 36 1 8.3026 -2.4587 4.0243 37 1 8.1053 -0.7380 0.1132 38 1 2.2480 1.1090 -2.2559 39 1 2.2756 -0.3617 -3.2582 40 1 0.7368 0.2280 -2.5853 41 1 1.4695 -2.5548 -0.3978 42 1 0.3381 -1.8870 -1.5987 43 1 0.9312 -4.4319 -2.2556 44 1 0.5814 -7.4608 -3.6135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700456225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:32 Heat of formation + Delta-G solvation = -66.809549 kcal Electronic energy + Delta-G solvation = -29088.864312 eV Core-core repulsion = 24763.315804 eV Total energy + Delta-G solvation = -4325.548508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35220 -40.74728 -39.39451 -38.59620 -37.19292 -34.43992 -33.81551 -32.84186 -31.59657 -31.22636 -30.69778 -28.04876 -26.79411 -25.04638 -24.53520 -24.10355 -23.52587 -20.81828 -20.44118 -18.94529 -18.30879 -17.83142 -17.74831 -17.53729 -16.64068 -16.18682 -15.87979 -15.54870 -15.30753 -14.83402 -14.77603 -14.59999 -14.20226 -14.13019 -14.04745 -13.75548 -13.51362 -13.45995 -13.36450 -12.87217 -12.69472 -12.65461 -12.25833 -12.04510 -11.80189 -11.46594 -11.23321 -11.14158 -10.87467 -10.77239 -10.42760 -10.38649 -10.33750 -10.20305 -9.84280 -9.45818 -9.35457 -8.93970 -8.45352 -7.96490 -7.84256 -6.40027 -3.80636 0.21867 0.74461 2.53513 3.04971 3.18590 3.27108 3.32596 3.55782 3.60205 3.90092 3.93198 4.01070 4.24703 4.34668 4.42318 4.58543 4.69314 4.95411 5.02708 5.11000 5.22175 5.27902 5.34973 5.46525 5.47727 5.47909 5.50550 5.61866 5.76419 5.79812 5.88345 5.95430 6.00221 6.14563 6.18025 6.29720 6.46127 6.56514 7.23665 7.25841 7.34849 7.56686 7.67169 8.08105 8.19880 8.63782 9.20061 9.56657 10.08569 10.77815 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.003344 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.195731 B = 8372.326172 C =10486.152015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.126 3.874 5 N -0.689 5.689 6 C 0.569 3.431 7 O -0.542 6.542 8 C 0.072 3.928 9 C -0.084 4.084 10 C -0.117 4.117 11 C 0.067 3.933 12 F -0.126 7.126 13 C 0.079 3.921 14 N -0.422 5.422 15 N -0.511 5.511 16 C 0.022 3.978 17 C 0.042 3.958 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.423 0.577 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.017 0.983 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 12.965 12.908 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 H 0.108 0.892 4 C 0.002 3.998 5 N -0.340 5.340 6 C 0.353 3.647 7 O -0.420 6.420 8 C -0.066 4.066 9 C -0.105 4.105 10 C -0.144 4.144 11 C 0.045 3.955 12 F -0.104 7.104 13 C -0.082 4.082 14 N -0.132 5.132 15 N -0.235 5.235 16 C -0.125 4.125 17 C -0.090 4.090 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.193 0.807 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.036 0.964 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.433 13.118 12.507 19.232 hybrid contribution 0.015 -1.049 -0.169 1.063 sum 6.447 12.069 12.337 18.424 Atomic orbital electron populations 1.22405 0.96398 1.03060 1.02559 1.22050 0.93564 0.98396 0.90519 0.89245 1.21497 0.79835 1.01241 0.97214 1.45692 1.07594 1.61437 1.19274 1.17701 0.85246 0.78322 0.83398 1.90783 1.69028 1.49561 1.32633 1.21306 0.95002 0.99273 0.91030 1.22049 0.93132 0.95640 0.99688 1.21668 0.95019 0.99868 0.97797 1.19097 0.78288 1.01305 0.96800 1.91551 1.28632 1.93921 1.96309 1.23002 0.89182 0.97736 0.98299 1.67672 1.09070 1.13028 1.23457 1.61781 1.57150 1.02213 1.02329 1.22548 0.98619 0.97139 0.94242 1.21937 0.96373 0.90753 0.99899 1.19728 0.87114 0.83259 0.86865 1.90477 1.31069 1.69406 1.55115 1.41862 1.31662 1.12783 1.33866 1.19684 1.14498 0.96365 1.12189 0.87950 1.25248 0.96667 0.97134 0.98878 1.69612 1.26431 1.16588 1.41727 0.85879 0.78709 0.79263 0.80563 1.20443 1.20962 1.19433 0.91822 0.91604 0.91871 0.91192 0.90718 0.73858 0.82369 0.82789 0.80691 0.92297 0.88402 0.96412 0.89535 0.93066 0.77580 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.41 37.16 0.31 -1.55 16 2 C 0.06 0.74 2.47 -67.71 -0.17 0.57 16 3 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 4 C 0.13 1.56 4.94 -4.04 -0.02 1.54 16 5 N -0.69 -9.47 5.40 -61.18 -0.33 -9.80 16 6 C 0.57 8.30 7.81 -12.24 -0.10 8.21 16 7 O -0.54 -8.93 16.32 5.34 0.09 -8.84 16 8 C 0.07 0.94 6.75 -83.02 -0.56 0.38 16 9 C -0.08 -0.88 9.63 -39.07 -0.38 -1.26 16 10 C -0.12 -1.02 10.15 -39.26 -0.40 -1.42 16 11 C 0.07 0.65 7.36 -39.10 -0.29 0.36 16 12 F -0.13 -1.21 17.28 2.25 0.04 -1.17 16 13 C 0.08 0.84 11.17 -17.47 -0.20 0.64 16 14 N -0.42 -5.43 9.53 -9.74 -0.09 -5.52 16 15 N -0.51 -7.74 3.82 -236.33 -0.90 -8.64 16 16 C 0.02 0.33 8.90 60.06 0.53 0.87 16 17 C 0.04 0.72 4.31 -4.98 -0.02 0.70 16 18 C 0.44 10.30 7.52 -10.99 -0.08 10.21 16 19 O -0.58 -15.04 13.88 5.55 0.08 -14.97 16 20 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.64 6.92 -51.93 -0.36 0.28 16 30 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.95 6.65 -51.93 -0.35 0.60 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.42 6.04 7.40 -40.82 -0.30 5.74 16 35 H 0.16 1.48 7.64 -52.48 -0.40 1.08 16 36 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.06 0.74 7.98 -51.93 -0.41 0.33 16 39 H 0.10 1.83 5.92 -51.93 -0.31 1.52 16 40 H 0.02 0.24 6.96 -51.92 -0.36 -0.12 16 41 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 42 H 0.05 0.82 6.81 -51.93 -0.35 0.46 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -32.38 372.88 -6.91 -39.29 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.45 Total: 14.87 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -1.60 Total: 11.32 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.66 Total: -62.23 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.16 Total: -23.81 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.38 -6.91 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700456225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.521 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds