Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 N 1.46502 * 109.46970 * 240.00261 * 2 1 3 5 5 C 1.34777 * 120.00057 * 85.00269 * 4 2 1 6 6 O 1.21697 * 120.00154 * 359.97438 * 5 4 2 7 7 C 1.46665 * 120.00167 * 180.02562 * 5 4 2 8 8 C 1.37924 * 126.21495 * 179.97438 * 7 5 4 9 9 C 1.39917 * 107.10862 * 180.27763 * 8 7 5 10 10 F 1.35101 * 126.08106 * 179.73418 * 9 8 7 11 11 C 1.35570 * 107.84269 * 359.57135 * 9 8 7 12 12 N 1.35744 * 108.83319 * 0.43454 * 11 9 8 13 13 H 0.97005 * 125.67893 * 179.72547 * 12 11 9 14 14 C 1.53004 * 109.47274 * 120.00576 * 2 1 3 15 15 C 1.53929 * 113.73039 * 281.72877 * 14 2 1 16 16 N 1.47956 * 86.18275 * 221.91966 * 15 14 2 17 17 C 1.46904 * 111.00361 * 137.58245 * 16 15 14 18 18 C 1.50692 * 109.47260 * 90.64238 * 17 16 15 19 19 O 1.21295 * 119.99783 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00397 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00331 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99946 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99910 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99910 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47190 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47087 * 119.99934 * 25 23 21 28 28 H 1.48495 * 109.47258 * 240.00144 * 25 23 21 29 29 C 1.47968 * 90.76002 * 24.69044 * 16 15 14 30 30 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46740 * 300.05481 * 1 2 3 32 32 H 1.08996 * 109.46804 * 60.05488 * 1 2 3 33 33 H 0.97005 * 120.00174 * 265.00149 * 4 2 1 34 34 H 1.08004 * 126.44624 * 0.02562 * 8 7 5 35 35 H 1.08004 * 125.58242 * 180.17255 * 11 9 8 36 36 H 1.08999 * 112.93663 * 53.43486 * 14 2 1 37 37 H 1.09004 * 113.76628 * 336.23507 * 15 14 2 38 38 H 1.08999 * 113.76428 * 107.60298 * 15 14 2 39 39 H 1.09003 * 109.47073 * 210.64267 * 17 16 15 40 40 H 1.09001 * 109.46953 * 330.64055 * 17 16 15 41 41 H 0.96997 * 119.99525 * 359.97438 * 20 18 17 42 42 H 0.96999 * 120.00066 * 179.97438 * 24 23 21 43 43 H 1.08998 * 113.75517 * 220.99342 * 29 16 15 44 44 H 1.08997 * 113.76075 * 89.63165 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8573 1.1625 -2.4119 7 6 2.6354 -0.7096 -3.5549 8 6 2.8151 -0.1499 -4.8026 9 6 3.2869 -1.1632 -5.6442 10 9 3.5859 -1.0337 -6.9553 11 6 3.3941 -2.2973 -4.9092 12 7 2.9971 -2.0348 -3.6379 13 1 2.9726 -2.6747 -2.9093 14 6 2.0401 -0.7214 1.2492 15 6 1.9765 0.1336 2.5276 16 7 3.3110 -0.4205 2.8459 17 6 4.2040 0.6234 3.3663 18 6 4.0866 0.6824 4.8675 19 8 3.3327 -0.0707 5.4469 20 7 4.8184 1.5726 5.5663 21 6 4.7112 1.6267 6.9320 22 1 4.0405 0.9555 7.4479 23 6 5.4661 2.5441 7.6524 24 7 6.2825 3.3604 7.0246 25 14 5.3194 2.6182 9.5131 26 1 4.3392 1.6020 9.9733 27 1 6.6436 2.3408 10.1255 28 1 4.8594 3.9702 9.9200 29 6 3.5701 -0.6731 1.4112 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3633 0.5130 -0.8905 33 1 2.2490 -1.6318 -1.1527 34 1 2.6234 0.8764 -5.0791 35 1 3.7350 -3.2542 -5.2762 36 1 1.6179 -1.7195 1.3654 37 1 1.9804 1.2071 2.3388 38 1 1.1959 -0.1741 3.2234 39 1 5.2330 0.3916 3.0912 40 1 3.9227 1.5871 2.9417 41 1 5.4210 2.1751 5.1029 42 1 6.8093 4.0012 7.5276 43 1 4.0627 -1.6254 1.2150 44 1 4.0401 0.1644 0.8957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700543840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = -62.126797 kcal Electronic energy + Delta-G solvation = -28092.578056 eV Core-core repulsion = 23767.232607 eV Total energy + Delta-G solvation = -4325.345449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.52913 -42.37136 -41.45227 -40.19482 -39.48899 -36.49446 -35.90313 -33.33910 -32.86707 -31.84873 -30.91568 -29.82435 -27.45664 -27.05497 -25.76896 -24.47159 -22.65810 -21.68785 -21.47884 -21.02454 -20.94232 -19.97295 -19.74576 -17.87273 -17.47983 -17.29001 -16.80954 -16.73940 -16.59428 -16.49059 -16.19868 -16.03101 -15.82677 -15.58255 -15.33778 -14.93753 -14.81927 -14.53840 -14.40498 -14.10856 -14.03676 -13.70415 -13.52615 -13.42294 -13.01453 -12.91051 -12.71598 -12.47229 -12.41863 -12.13656 -11.96465 -11.86777 -11.62490 -11.50907 -11.27535 -10.39636 -10.30881 -10.01984 -9.99143 -9.64022 -9.31052 -8.47641 -5.96572 0.25143 1.35649 1.38916 1.40569 1.55004 1.85192 2.00746 2.04844 2.20287 2.27695 2.76533 3.18385 3.30906 3.38444 3.49844 3.64969 3.86279 4.07317 4.08224 4.15927 4.20051 4.26738 4.32180 4.39408 4.47397 4.49722 4.52325 4.54294 4.74076 4.77024 4.83117 4.88703 4.97135 5.17733 5.28935 5.34929 5.39398 5.41985 5.44933 5.72509 5.88993 6.07578 6.29098 6.48436 6.59575 7.07073 7.12215 7.55713 8.11859 8.70074 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.001796 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.477884 B =15583.758847 C =16005.759310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.071 0.929 4 N -0.703 5.703 5 C 0.592 3.408 6 O -0.569 6.569 7 C -0.037 4.037 8 C -0.152 4.152 9 C -0.034 4.034 10 F -0.139 7.139 11 C 0.040 3.960 12 N -0.504 5.504 13 H 0.445 0.555 14 C -0.097 4.097 15 C 0.013 3.987 16 N -0.481 5.481 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.011 3.989 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.413 0.587 34 H 0.145 0.855 35 H 0.226 0.774 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.108 0.892 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 -13.138 -24.924 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.090 0.910 4 N -0.354 5.354 5 C 0.379 3.621 6 O -0.447 6.447 7 C -0.152 4.152 8 C -0.179 4.179 9 C -0.059 4.059 10 F -0.118 7.118 11 C -0.099 4.099 12 N -0.103 5.103 13 H 0.288 0.712 14 C -0.116 4.116 15 C -0.116 4.116 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.230 3.770 19 O -0.503 6.503 20 N -0.215 5.215 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.118 4.118 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.250 0.750 34 H 0.163 0.837 35 H 0.242 0.758 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.786 -13.261 -23.844 28.115 hybrid contribution 0.564 1.046 0.323 1.232 sum -6.223 -12.215 -23.521 27.224 Atomic orbital electron populations 1.22110 0.94050 1.03310 1.02248 1.20919 0.94837 0.96292 0.82539 0.91040 1.45672 1.66787 1.14405 1.08527 1.17082 0.77040 0.85715 0.82218 1.90869 1.52128 1.16789 1.84951 1.19910 1.14330 0.85625 0.95322 1.21427 1.04392 1.00348 0.91747 1.16763 1.13377 0.96021 0.79757 1.91425 1.92296 1.96448 1.31643 1.22360 1.03686 1.00470 0.83405 1.41690 1.48810 1.08612 1.11148 0.71168 1.23143 0.95608 1.00978 0.91892 1.23963 0.93290 0.98136 0.96253 1.68350 1.02458 1.33112 1.16399 1.22352 1.00456 0.96326 0.91762 1.20801 0.83241 0.82585 0.90405 1.90479 1.42438 1.44913 1.72453 1.41981 1.39171 1.33400 1.06967 1.19693 1.24359 1.19039 0.83075 0.90367 1.26060 0.95314 0.95100 1.04991 1.69682 1.26581 1.21809 1.38225 0.84859 0.78326 0.78271 0.76802 1.19763 1.19559 1.19605 1.24085 0.96543 1.03321 0.87811 0.90476 0.91115 0.93368 0.75010 0.83744 0.75779 0.85699 0.91171 0.90380 0.87664 0.90710 0.77136 0.91330 0.87344 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.44 71.98 0.68 -1.70 16 2 C 0.16 2.47 2.29 44.99 0.10 2.57 16 3 H 0.07 1.49 7.48 -2.39 -0.02 1.48 16 4 N -0.70 -8.17 4.94 -446.50 -2.21 -10.38 16 5 C 0.59 10.76 7.75 86.44 0.67 11.43 16 6 O -0.57 -15.80 16.54 -4.34 -0.07 -15.88 16 7 C -0.04 -0.54 7.05 40.36 0.28 -0.26 16 8 C -0.15 -2.77 10.66 22.60 0.24 -2.53 16 9 C -0.03 -0.53 7.98 22.06 0.18 -0.35 16 10 F -0.14 -2.58 17.32 44.97 0.78 -1.80 16 11 C 0.04 0.26 11.90 83.47 0.99 1.26 16 12 N -0.50 -2.74 6.00 -183.38 -1.10 -3.84 16 13 H 0.45 -1.12 8.19 -92.70 -0.76 -1.88 16 14 C -0.10 -1.56 3.35 -10.15 -0.03 -1.60 16 15 C 0.01 0.33 7.41 86.40 0.64 0.97 16 16 N -0.48 -14.37 5.65 -912.44 -5.15 -19.53 16 17 C 0.02 0.78 5.28 85.55 0.45 1.23 16 18 C 0.44 21.38 7.83 87.65 0.69 22.07 16 19 O -0.62 -34.77 16.01 -3.08 -0.05 -34.82 16 20 N -0.58 -30.13 5.29 -307.00 -1.62 -31.76 16 21 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.02 -0.82 5.50 84.92 0.47 -0.36 16 24 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 25 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 C 0.01 0.20 7.38 86.40 0.64 0.84 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.41 1.69 7.73 -92.70 -0.72 0.97 16 34 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.23 -0.40 8.06 -2.91 -0.02 -0.42 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.79 7.36 -2.38 -0.02 1.77 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16 40 H 0.07 2.31 7.38 -2.39 -0.02 2.29 16 41 H 0.39 19.61 7.90 -92.71 -0.73 18.87 16 42 H 0.28 14.12 8.31 -92.71 -0.77 13.34 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.35 7.88 -2.39 -0.02 1.34 16 Total: -1.00 -81.59 381.56 -1.44 -83.03 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.13 Total: 24.38 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.81 Total: 15.27 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -9.80 Total: -115.53 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.12 Total: -50.69 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -81.59 -1.44 -83.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700543840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.900 kcal (2) G-P(sol) polarization free energy of solvation -81.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds