Wall clock time and date at job start Tue Mar 31 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 14 14 H 1.09003 * 109.51181 * 299.89720 * 13 2 1 15 15 C 1.53297 * 109.51406 * 179.74926 * 13 2 1 16 16 N 1.47151 * 108.38536 * 187.77092 * 15 13 2 17 17 C 1.34774 * 120.98533 * 230.50938 * 16 15 13 18 18 O 1.21278 * 119.99567 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99993 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46719 * 180.02562 * 19 17 16 21 21 C 1.50702 * 109.47034 * 180.02562 * 20 19 17 22 22 C 1.33385 * 125.20533 * 89.71996 * 21 20 19 23 23 C 1.38426 * 114.92429 * 179.86123 * 22 21 20 24 24 C 1.33387 * 114.91803 * 0.42885 * 23 22 21 25 25 S 1.75882 * 125.20223 * 270.02451 * 21 20 19 26 26 C 1.47157 * 118.03518 * 50.53267 * 16 15 13 27 27 C 1.53301 * 108.38394 * 309.46586 * 26 16 15 28 28 O 1.42955 * 109.51700 * 59.99747 * 13 2 1 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 33 33 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.67723 * 307.49216 * 15 13 2 35 35 H 1.09001 * 109.68316 * 68.04471 * 15 13 2 36 36 H 1.08998 * 109.47441 * 299.99769 * 19 17 16 37 37 H 1.08996 * 109.46986 * 60.00684 * 19 17 16 38 38 H 1.08997 * 109.47528 * 299.99741 * 20 19 17 39 39 H 1.09004 * 109.47498 * 60.00122 * 20 19 17 40 40 H 1.08005 * 122.53750 * 0.02562 * 22 21 20 41 41 H 1.08004 * 122.54110 * 180.19862 * 23 22 21 42 42 H 1.08001 * 125.20210 * 179.75091 * 24 23 22 43 43 H 1.09001 * 109.68362 * 189.74315 * 26 16 15 44 44 H 1.08995 * 109.71122 * 69.20662 * 26 16 15 45 45 H 1.08998 * 109.51127 * 292.37741 * 27 26 16 46 46 H 1.09001 * 109.55376 * 172.25265 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 3.7570 1.3957 -4.9279 11 1 3.3164 -0.6440 -6.1637 12 1 1.4824 0.8102 -5.5308 13 6 2.0400 -0.7213 1.2492 14 1 1.6786 -0.2069 2.1397 15 6 3.5730 -0.7273 1.2470 16 7 4.0353 -1.5829 2.3514 17 6 4.9545 -1.1417 3.2328 18 8 5.4128 -0.0243 3.1227 19 6 5.4126 -2.0369 4.3552 20 6 6.4500 -1.2996 5.2045 21 6 6.9086 -2.1950 6.3265 22 6 7.9354 -3.0439 6.2622 23 6 8.1721 -3.7621 7.4217 24 6 7.3319 -3.5028 8.4247 25 16 6.1672 -2.2858 7.9189 26 6 3.4649 -2.9346 2.4646 27 6 1.9371 -2.8210 2.4075 28 8 1.5640 -2.0693 1.2502 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.2571 -2.3939 -4.2397 34 1 3.9371 -1.1230 0.2989 35 1 3.9443 0.2877 1.3887 36 1 4.5589 -2.3055 4.9774 37 1 5.8585 -2.9407 3.9401 38 1 7.3038 -1.0306 4.5827 39 1 6.0038 -0.3958 5.6196 40 1 8.5382 -3.1602 5.3736 41 1 8.9739 -4.4808 7.5064 42 1 7.3621 -3.9691 9.3984 43 1 3.7646 -3.3814 3.4126 44 1 3.8181 -3.5530 1.6395 45 1 1.5761 -2.3145 3.3026 46 1 1.4990 -3.8175 2.3513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700605727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:48 Heat of formation + Delta-G solvation = -53.881907 kcal Electronic energy + Delta-G solvation = -27051.837127 eV Core-core repulsion = 23260.769628 eV Total energy + Delta-G solvation = -3791.067498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48494 -39.74864 -38.74805 -37.08983 -35.76017 -34.76478 -34.13444 -31.73855 -30.25874 -29.98562 -28.59745 -26.31101 -25.65640 -24.84445 -23.81763 -22.93197 -21.24322 -20.13289 -20.09030 -19.30575 -18.62341 -17.61678 -17.59804 -17.03826 -16.87800 -16.42739 -16.26411 -15.97324 -15.95401 -15.13898 -15.07449 -15.00739 -14.66187 -14.16548 -14.09878 -13.96361 -13.63571 -13.48884 -13.23230 -13.18185 -13.06476 -12.95533 -12.74178 -12.67230 -12.50406 -12.48442 -12.22494 -12.02415 -11.79356 -11.68038 -11.58450 -11.50792 -11.09039 -10.93671 -10.82813 -9.59531 -9.55437 -9.37280 -8.94438 -7.89423 -5.16435 0.08816 0.73515 1.12826 1.47736 1.50259 1.53709 1.55881 1.78357 1.93160 2.58166 2.81910 3.36308 3.44088 3.71232 3.89174 3.94325 3.97550 3.98830 4.03205 4.16822 4.20079 4.29644 4.30610 4.35576 4.47620 4.57591 4.63329 4.65029 4.73022 4.80895 4.84180 4.86945 4.88057 5.03023 5.05441 5.09915 5.21256 5.26795 5.33194 5.42438 5.53911 5.60929 5.61939 6.27711 6.33618 6.34326 7.06162 7.39384 8.15580 8.41204 9.33615 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002279 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.207036 B =12285.686472 C =12844.264520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.094 3.906 14 H 0.076 0.924 15 C 0.094 3.906 16 N -0.613 5.613 17 C 0.509 3.491 18 O -0.586 6.586 19 C -0.121 4.121 20 C -0.029 4.029 21 C -0.183 4.183 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.214 4.214 25 S 0.086 5.914 26 C 0.069 3.931 27 C 0.041 3.959 28 O -0.385 6.385 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.378 0.622 33 H 0.249 0.751 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.184 0.816 43 H 0.132 0.868 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -6.387 27.041 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.205 1.205 13 C 0.035 3.965 14 H 0.094 0.906 15 C -0.029 4.029 16 N -0.346 5.346 17 C 0.300 3.700 18 O -0.466 6.466 19 C -0.161 4.161 20 C -0.068 4.068 21 C -0.300 4.300 22 C -0.174 4.174 23 C -0.172 4.172 24 C -0.350 4.350 25 S 0.349 5.651 26 C -0.053 4.053 27 C -0.036 4.036 28 O -0.304 6.304 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.210 0.790 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.201 0.799 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.186 -5.034 27.441 28.211 hybrid contribution 1.600 -0.451 -1.907 2.530 sum 5.785 -5.485 25.533 26.749 Atomic orbital electron populations 1.22166 0.96974 1.01131 1.00504 1.20510 0.93708 0.94576 0.84941 0.92501 1.42471 1.78005 1.10475 1.05677 1.19583 1.34575 0.94122 0.88503 0.90785 1.25475 1.03236 0.96865 1.01194 1.69820 1.52580 1.10104 1.29275 0.85294 0.77844 0.77308 0.79818 1.20739 1.22375 1.20533 1.22588 0.91415 0.84051 0.98467 0.90610 1.22027 0.95488 0.96035 0.89398 1.48330 1.41666 1.16420 1.28206 1.21376 0.77833 0.87659 0.83164 1.90683 1.57446 1.22926 1.75576 1.21704 1.01109 0.98849 0.94419 1.19741 0.98776 0.95706 0.92620 1.24442 1.02179 1.04653 0.98776 1.20422 0.98738 0.97659 1.00562 1.20430 1.01875 1.02469 0.92430 1.25943 1.00325 1.03888 1.04811 1.84383 1.33931 1.39807 1.06958 1.22723 0.95070 0.82317 1.05178 1.23227 0.93391 0.98372 0.88628 1.88064 1.75386 1.23536 1.43379 0.94354 0.93543 0.91427 0.78970 0.94266 0.92493 0.90304 0.86307 0.86496 0.90285 0.91047 0.83503 0.82433 0.79876 0.84985 0.91006 0.91344 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.35 71.98 0.67 -4.67 16 2 C 0.17 6.85 2.74 44.99 0.12 6.97 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.73 -36.68 4.29 -322.93 -1.38 -38.07 16 5 C -0.24 -13.17 9.93 84.04 0.83 -12.34 16 6 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 9 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.09 3.14 2.53 30.69 0.08 3.22 16 14 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.09 3.36 5.86 86.35 0.51 3.87 16 16 N -0.61 -17.04 3.02 -817.34 -2.47 -19.51 16 17 C 0.51 13.87 7.71 87.66 0.68 14.54 16 18 O -0.59 -21.07 15.45 -3.02 -0.05 -21.12 16 19 C -0.12 -2.06 4.06 29.85 0.12 -1.94 16 20 C -0.03 -0.53 5.00 29.85 0.15 -0.38 16 21 C -0.18 -2.97 5.76 24.59 0.14 -2.83 16 22 C -0.14 -2.11 10.05 21.22 0.21 -1.90 16 23 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16 24 C -0.21 -2.54 11.23 66.72 0.75 -1.79 16 25 S 0.09 1.24 23.33 -56.49 -1.32 -0.08 16 26 C 0.07 1.39 6.54 86.35 0.56 1.96 16 27 C 0.04 0.86 6.99 72.08 0.50 1.36 16 28 O -0.38 -12.49 9.22 -148.98 -1.37 -13.86 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.38 20.82 7.20 -92.71 -0.67 20.16 16 33 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 34 H 0.06 2.49 7.26 -2.39 -0.02 2.47 16 35 H 0.08 3.03 7.08 -2.39 -0.02 3.02 16 36 H 0.12 1.46 7.66 -2.39 -0.02 1.44 16 37 H 0.12 1.58 8.02 -2.39 -0.02 1.56 16 38 H 0.08 1.65 8.10 -2.39 -0.02 1.64 16 39 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.13 1.50 6.05 -2.39 -0.01 1.48 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.12 387.04 2.05 -71.08 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.31 Total: 31.42 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.02 Total: 0.61 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.57 Total: -117.09 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.42 Total: -34.98 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Total: -73.12 2.05 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700605727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.197 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds