Wall clock time and date at job start Tue Mar 31 2020 20:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00371 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00131 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47087 * 89.99301 * 9 7 5 11 11 H 1.48490 * 109.47356 * 210.00089 * 9 7 5 12 12 H 1.48507 * 109.46606 * 330.00045 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09003 * 109.50747 * 185.10071 * 13 2 1 15 15 C 1.53299 * 109.51355 * 65.00544 * 13 2 1 16 16 N 1.47154 * 108.38601 * 187.77387 * 15 13 2 17 17 C 1.34772 * 120.97964 * 230.55832 * 16 15 13 18 18 O 1.21283 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00155 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47322 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46988 * 179.97438 * 20 19 17 22 22 C 1.33387 * 125.20401 * 89.71956 * 21 20 19 23 23 C 1.38426 * 114.91988 * 179.85445 * 22 21 20 24 24 C 1.33388 * 114.92290 * 0.43549 * 23 22 21 25 25 S 1.75886 * 109.59174 * 359.76235 * 24 23 22 26 26 C 1.47153 * 118.03767 * 50.52811 * 16 15 13 27 27 C 1.53299 * 108.38347 * 309.46531 * 26 16 15 28 28 O 1.42963 * 109.22127 * 52.30803 * 27 26 16 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.67291 * 307.48932 * 15 13 2 35 35 H 1.08992 * 109.68290 * 68.00783 * 15 13 2 36 36 H 1.09006 * 109.46767 * 299.99483 * 19 17 16 37 37 H 1.09000 * 109.47429 * 59.98684 * 19 17 16 38 38 H 1.09006 * 109.47140 * 299.99699 * 20 19 17 39 39 H 1.08999 * 109.47147 * 59.99534 * 20 19 17 40 40 H 1.08002 * 122.54039 * 0.02562 * 22 21 20 41 41 H 1.08000 * 122.53749 * 180.19687 * 23 22 21 42 42 H 1.08001 * 125.20604 * 179.74904 * 24 23 22 43 43 H 1.08996 * 109.68428 * 69.18980 * 26 16 15 44 44 H 1.08995 * 109.68154 * 189.74886 * 26 16 15 45 45 H 1.08998 * 109.50970 * 172.22605 * 27 26 16 46 46 H 1.09001 * 109.51741 * 292.32937 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0053 4.6429 9 14 3.0557 -2.4745 3.4254 10 1 4.4885 -2.6167 3.0620 11 1 2.8156 -3.1048 4.7483 12 1 2.2161 -3.1429 2.3989 13 6 2.0399 -0.7213 -1.2493 14 1 3.1261 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4984 16 7 1.9696 -0.7334 -3.6851 17 6 2.6771 -0.2051 -4.7034 18 8 3.0474 0.9485 -4.6502 19 6 3.0080 -1.0479 -5.9080 20 6 3.8109 -0.2143 -6.9087 21 6 4.1423 -1.0573 -8.1131 22 6 3.3826 -1.1731 -9.2033 23 6 3.8943 -2.0038 -10.1852 24 6 5.0652 -2.5698 -9.8887 25 16 5.5866 -2.0449 -8.2930 26 6 1.5097 -2.1306 -3.7270 27 6 1.9209 -2.8144 -2.4180 28 8 1.4658 -2.0290 -1.3135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.0611 -0.4626 5.4348 34 1 0.5627 0.2647 -2.4776 35 1 2.1793 1.0135 -2.5277 36 1 3.5979 -1.9103 -5.5972 37 1 2.0853 -1.3891 -6.3774 38 1 3.2207 0.6479 -7.2195 39 1 4.7336 0.1271 -6.4395 40 1 2.4409 -0.6557 -9.3128 41 1 3.3823 -2.1833 -11.1191 42 1 5.6096 -3.2470 -10.5301 43 1 0.4249 -2.1571 -3.8299 44 1 1.9716 -2.6441 -4.5701 45 1 1.4720 -3.8064 -2.3688 46 1 3.0066 -2.9038 -2.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700605728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:51 Heat of formation + Delta-G solvation = -29.721463 kcal Electronic energy + Delta-G solvation = -26886.801097 eV Core-core repulsion = 23096.781274 eV Total energy + Delta-G solvation = -3790.019823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56570 -38.78880 -38.16047 -35.71817 -34.68300 -34.10449 -32.49793 -30.72128 -29.42175 -28.84607 -27.35660 -25.52210 -24.53646 -23.43512 -22.96675 -21.83158 -19.85079 -19.62610 -19.23664 -17.99059 -17.63295 -16.89730 -16.54940 -16.12762 -15.91366 -15.71645 -15.18599 -14.84294 -14.51965 -14.27103 -14.21576 -13.60454 -13.38047 -13.29196 -13.06907 -12.85278 -12.76160 -12.54998 -12.51093 -12.41067 -12.28484 -11.97651 -11.60272 -11.43567 -11.28908 -11.03608 -10.94423 -10.78430 -10.65012 -10.38046 -10.11088 -9.95448 -9.88645 -9.56417 -9.03153 -8.91791 -8.85703 -8.61842 -7.24810 -5.74450 -3.09652 0.60171 1.25373 1.63429 2.34132 2.41351 2.70847 3.40786 3.46423 3.48016 3.80796 4.07592 4.53112 4.57928 4.62091 4.62935 4.64225 4.72374 4.80327 4.94581 5.01833 5.04117 5.15434 5.19748 5.21842 5.34199 5.41546 5.53045 5.53934 5.57985 5.68066 5.69843 5.72234 5.77224 5.88408 5.91169 6.10909 6.11778 6.24259 6.34216 6.47825 6.74320 7.06550 7.15510 7.30344 7.94281 8.01765 8.44708 9.23910 9.96231 10.17158 11.43719 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002204 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.259813 B =12702.483437 C =13107.722405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.069 0.931 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.072 3.928 14 H 0.064 0.936 15 C 0.083 3.917 16 N -0.614 5.614 17 C 0.515 3.485 18 O -0.538 6.538 19 C -0.134 4.134 20 C -0.034 4.034 21 C -0.171 4.171 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.218 4.218 25 S 0.098 5.902 26 C 0.072 3.928 27 C 0.044 3.956 28 O -0.362 6.362 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -7.271 -31.478 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.012 3.988 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.415 6.415 19 C -0.174 4.174 20 C -0.074 4.074 21 C -0.288 4.288 22 C -0.171 4.171 23 C -0.164 4.164 24 C -0.353 4.353 25 S 0.361 5.639 26 C -0.051 4.051 27 C -0.034 4.034 28 O -0.280 6.280 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.180 0.820 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.560 -6.843 -30.233 31.037 hybrid contribution -0.749 -1.205 -1.097 1.793 sum 0.811 -8.048 -31.329 32.357 Atomic orbital electron populations 1.22382 0.98149 1.01633 1.00095 1.20175 0.93020 0.94894 0.83920 0.91346 1.42705 1.79588 1.09612 1.06763 1.19078 1.36897 0.95517 0.85730 0.89147 1.24657 1.01442 0.97501 0.95527 1.69701 1.52650 1.35577 1.00252 0.86563 0.78431 0.86919 0.76844 1.21238 1.21829 1.19919 1.23031 0.97608 0.83024 0.95097 0.91778 1.22468 1.02125 0.95862 0.83539 1.48202 1.54686 1.12834 1.19125 1.20610 0.77366 0.87870 0.83805 1.90720 1.52836 1.17951 1.79985 1.21705 1.02353 0.99351 0.94016 1.19884 1.01348 0.95988 0.90191 1.24549 0.98645 1.04824 1.00793 1.20169 1.01710 1.01861 0.93370 1.20184 0.96225 0.99066 1.00916 1.25637 1.01578 1.07885 1.00215 1.84454 1.22683 1.42630 1.14094 1.22504 1.00939 0.81809 0.99874 1.22924 0.99501 0.95218 0.85761 1.88088 1.67704 1.26007 1.46220 0.92393 0.94344 0.92561 0.80101 0.93103 0.89977 0.87992 0.88696 0.88478 0.88981 0.89757 0.84238 0.84341 0.81984 0.90232 0.89067 0.87811 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.06 37.16 0.34 -2.53 16 2 C 0.19 3.63 2.77 -67.93 -0.19 3.45 16 3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 4 N -0.74 -17.75 4.91 -53.42 -0.26 -18.02 16 5 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 9 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.63 6.52 56.52 0.37 -6.26 16 13 C 0.07 1.14 2.61 -26.58 -0.07 1.07 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.08 1.12 5.82 -3.53 -0.02 1.10 16 16 N -0.61 -7.07 3.02 -172.27 -0.52 -7.59 16 17 C 0.52 6.06 7.71 -10.99 -0.08 5.97 16 18 O -0.54 -8.31 15.45 5.55 0.09 -8.22 16 19 C -0.13 -1.06 4.05 -27.89 -0.11 -1.17 16 20 C -0.03 -0.29 5.00 -27.89 -0.14 -0.43 16 21 C -0.17 -1.34 5.76 -36.00 -0.21 -1.55 16 22 C -0.14 -1.01 10.05 -41.21 -0.41 -1.42 16 23 C -0.13 -0.87 10.18 -41.21 -0.42 -1.29 16 24 C -0.22 -1.43 11.23 29.04 0.33 -1.11 16 25 S 0.10 0.74 23.33 -107.50 -2.51 -1.77 16 26 C 0.07 0.62 6.54 -3.53 -0.02 0.60 16 27 C 0.04 0.47 6.98 37.31 0.26 0.73 16 28 O -0.36 -5.56 9.24 -35.23 -0.33 -5.88 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.56 6.42 -51.93 -0.33 0.23 16 31 H 0.06 1.02 7.55 -51.93 -0.39 0.63 16 32 H 0.37 8.79 5.45 -40.82 -0.22 8.57 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.08 1.07 6.27 -51.92 -0.33 0.74 16 35 H 0.10 1.49 7.08 -51.93 -0.37 1.13 16 36 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 37 H 0.10 0.59 8.01 -51.93 -0.42 0.18 16 38 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.53 6.05 -51.93 -0.31 0.21 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -34.28 382.11 -9.72 -44.01 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.00 Total: 6.29 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.01 Total: -3.56 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.01 Total: -54.33 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.24 Total: -14.11 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.28 -9.72 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700605728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.285 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds