Wall clock time and date at job start Tue Mar 31 2020 20:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00371 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00131 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47087 * 89.99301 * 9 7 5 11 11 H 1.48490 * 109.47356 * 210.00089 * 9 7 5 12 12 H 1.48507 * 109.46606 * 330.00045 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09003 * 109.50747 * 185.10071 * 13 2 1 15 15 C 1.53299 * 109.51355 * 65.00544 * 13 2 1 16 16 N 1.47154 * 108.38601 * 187.77387 * 15 13 2 17 17 C 1.34772 * 120.97964 * 230.55832 * 16 15 13 18 18 O 1.21283 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00155 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47322 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46988 * 179.97438 * 20 19 17 22 22 C 1.33387 * 125.20401 * 89.71956 * 21 20 19 23 23 C 1.38426 * 114.91988 * 179.85445 * 22 21 20 24 24 C 1.33388 * 114.92290 * 0.43549 * 23 22 21 25 25 S 1.75886 * 109.59174 * 359.76235 * 24 23 22 26 26 C 1.47153 * 118.03767 * 50.52811 * 16 15 13 27 27 C 1.53299 * 108.38347 * 309.46531 * 26 16 15 28 28 O 1.42963 * 109.22127 * 52.30803 * 27 26 16 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.67291 * 307.48932 * 15 13 2 35 35 H 1.08992 * 109.68290 * 68.00783 * 15 13 2 36 36 H 1.09006 * 109.46767 * 299.99483 * 19 17 16 37 37 H 1.09000 * 109.47429 * 59.98684 * 19 17 16 38 38 H 1.09006 * 109.47140 * 299.99699 * 20 19 17 39 39 H 1.08999 * 109.47147 * 59.99534 * 20 19 17 40 40 H 1.08002 * 122.54039 * 0.02562 * 22 21 20 41 41 H 1.08000 * 122.53749 * 180.19687 * 23 22 21 42 42 H 1.08001 * 125.20604 * 179.74904 * 24 23 22 43 43 H 1.08996 * 109.68428 * 69.18980 * 26 16 15 44 44 H 1.08995 * 109.68154 * 189.74886 * 26 16 15 45 45 H 1.08998 * 109.50970 * 172.22605 * 27 26 16 46 46 H 1.09001 * 109.51741 * 292.32937 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0053 4.6429 9 14 3.0557 -2.4745 3.4254 10 1 4.4885 -2.6167 3.0620 11 1 2.8156 -3.1048 4.7483 12 1 2.2161 -3.1429 2.3989 13 6 2.0399 -0.7213 -1.2493 14 1 3.1261 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4984 16 7 1.9696 -0.7334 -3.6851 17 6 2.6771 -0.2051 -4.7034 18 8 3.0474 0.9485 -4.6502 19 6 3.0080 -1.0479 -5.9080 20 6 3.8109 -0.2143 -6.9087 21 6 4.1423 -1.0573 -8.1131 22 6 3.3826 -1.1731 -9.2033 23 6 3.8943 -2.0038 -10.1852 24 6 5.0652 -2.5698 -9.8887 25 16 5.5866 -2.0449 -8.2930 26 6 1.5097 -2.1306 -3.7270 27 6 1.9209 -2.8144 -2.4180 28 8 1.4658 -2.0290 -1.3135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.0611 -0.4626 5.4348 34 1 0.5627 0.2647 -2.4776 35 1 2.1793 1.0135 -2.5277 36 1 3.5979 -1.9103 -5.5972 37 1 2.0853 -1.3891 -6.3774 38 1 3.2207 0.6479 -7.2195 39 1 4.7336 0.1271 -6.4395 40 1 2.4409 -0.6557 -9.3128 41 1 3.3823 -2.1833 -11.1191 42 1 5.6096 -3.2470 -10.5301 43 1 0.4249 -2.1571 -3.8299 44 1 1.9716 -2.6441 -4.5701 45 1 1.4720 -3.8064 -2.3688 46 1 3.0066 -2.9038 -2.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700605728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:50 Heat of formation + Delta-G solvation = -52.041919 kcal Electronic energy + Delta-G solvation = -26887.768985 eV Core-core repulsion = 23096.781274 eV Total energy + Delta-G solvation = -3790.987711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53379 -39.81341 -38.75242 -37.27023 -35.76601 -34.80581 -34.30389 -32.33480 -30.24735 -30.08581 -28.37232 -26.59751 -25.69161 -24.69892 -23.80148 -22.94564 -21.36068 -20.14415 -20.10140 -19.75930 -18.62275 -17.70572 -17.59115 -17.02108 -16.89970 -16.54153 -16.31846 -16.22942 -15.88666 -15.41852 -15.07237 -14.86737 -14.57696 -14.31132 -14.14840 -14.13227 -13.86941 -13.62619 -13.33180 -13.25932 -13.11655 -12.98667 -12.93316 -12.70752 -12.48140 -12.36458 -12.10837 -12.02083 -11.83256 -11.75122 -11.58918 -11.57617 -11.20204 -10.98262 -10.86011 -9.61286 -9.55823 -9.39542 -9.32451 -8.01856 -5.34753 0.08790 0.73079 1.13154 1.37686 1.40127 1.48743 1.52461 1.76761 1.92061 2.48859 2.74221 3.30278 3.34577 3.42747 3.85215 3.90292 3.92414 3.94480 4.02796 4.08335 4.16591 4.27704 4.29914 4.33858 4.42492 4.55611 4.59296 4.63657 4.65004 4.73413 4.80742 4.82576 4.87982 4.95583 5.04181 5.05700 5.21921 5.26346 5.30067 5.41779 5.58080 5.62582 5.76914 6.18321 6.24370 6.29485 7.05163 7.08191 7.84273 8.04732 9.19516 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002204 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.259813 B =12702.483437 C =13107.722405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.179 3.821 3 H 0.058 0.942 4 N -0.747 5.747 5 C -0.227 4.227 6 H 0.059 0.941 7 C -0.066 4.066 8 N -0.984 5.984 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.253 1.253 13 C 0.088 3.912 14 H 0.047 0.953 15 C 0.091 3.909 16 N -0.615 5.615 17 C 0.511 3.489 18 O -0.583 6.583 19 C -0.122 4.122 20 C -0.030 4.030 21 C -0.182 4.182 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.216 4.216 25 S 0.073 5.927 26 C 0.074 3.926 27 C 0.034 3.966 28 O -0.383 6.383 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -10.083 -34.907 36.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 H 0.076 0.924 4 N -0.391 5.391 5 C -0.358 4.358 6 H 0.077 0.923 7 C -0.257 4.257 8 N -0.634 5.634 9 Si 0.781 3.219 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.177 1.177 13 C 0.029 3.971 14 H 0.065 0.935 15 C -0.033 4.033 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.463 6.463 19 C -0.162 4.162 20 C -0.069 4.069 21 C -0.299 4.299 22 C -0.170 4.170 23 C -0.171 4.171 24 C -0.351 4.351 25 S 0.336 5.664 26 C -0.048 4.048 27 C -0.043 4.043 28 O -0.302 6.302 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.199 0.801 43 H 0.113 0.887 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.697 -9.684 -33.733 35.102 hybrid contribution -0.509 -0.269 -0.143 0.594 sum 0.188 -9.953 -33.876 35.308 Atomic orbital electron populations 1.22194 0.96491 1.01635 1.00561 1.20397 0.94083 0.94605 0.83854 0.92410 1.42697 1.79949 1.09628 1.06791 1.19046 1.34959 0.94428 0.87390 0.92337 1.25478 1.02498 1.02523 0.95190 1.69880 1.54758 1.37655 1.01130 0.85417 0.78449 0.81029 0.76988 1.20673 1.22215 1.17739 1.22558 0.96322 0.83971 0.94262 0.93463 1.22184 1.02296 0.95127 0.83677 1.48302 1.54494 1.13901 1.18148 1.21317 0.76314 0.87656 0.84556 1.90705 1.54491 1.20166 1.80944 1.21712 1.03718 0.98755 0.92050 1.19754 1.00479 0.96097 0.90606 1.24456 0.99015 1.05481 1.00985 1.20426 1.02053 1.01499 0.93016 1.20460 0.96295 0.98715 1.01591 1.25928 1.01673 1.07899 0.99585 1.84544 1.23240 1.43143 1.15493 1.22723 1.02160 0.79904 0.99988 1.23275 0.99767 0.95938 0.85292 1.88034 1.67934 1.25592 1.48656 0.94835 0.90949 0.92659 0.79948 0.93410 0.88994 0.89693 0.87027 0.85688 0.89661 0.91643 0.82912 0.82287 0.80118 0.88723 0.85464 0.85055 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.06 71.98 0.65 -4.50 16 2 C 0.18 6.86 2.77 44.99 0.12 6.99 16 3 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 4 N -0.75 -35.80 4.91 -322.93 -1.59 -37.39 16 5 C -0.23 -13.19 10.41 84.03 0.87 -12.32 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16 9 Si 0.95 46.75 27.74 68.60 1.90 48.65 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.25 -11.38 6.52 99.48 0.65 -10.74 16 13 C 0.09 2.73 2.61 30.69 0.08 2.81 16 14 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 15 C 0.09 2.36 5.82 86.35 0.50 2.86 16 16 N -0.62 -12.69 3.02 -817.35 -2.47 -15.16 16 17 C 0.51 11.16 7.71 87.66 0.68 11.84 16 18 O -0.58 -18.00 15.45 -3.04 -0.05 -18.04 16 19 C -0.12 -1.59 4.05 29.85 0.12 -1.47 16 20 C -0.03 -0.46 5.00 29.85 0.15 -0.31 16 21 C -0.18 -2.53 5.76 24.59 0.14 -2.39 16 22 C -0.14 -1.63 10.05 21.22 0.21 -1.42 16 23 C -0.14 -1.44 10.18 21.22 0.22 -1.22 16 24 C -0.22 -2.31 11.23 66.72 0.75 -1.57 16 25 S 0.07 1.00 23.33 -56.49 -1.32 -0.32 16 26 C 0.07 0.97 6.54 86.35 0.56 1.53 16 27 C 0.03 0.61 6.98 72.08 0.50 1.12 16 28 O -0.38 -10.87 9.24 -148.98 -1.38 -12.24 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.98 6.42 -2.39 -0.02 1.97 16 31 H 0.05 1.92 7.55 -2.39 -0.02 1.90 16 32 H 0.37 17.27 5.45 -92.71 -0.51 16.77 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.09 2.19 6.27 -2.38 -0.01 2.18 16 35 H 0.08 2.51 7.08 -2.39 -0.02 2.50 16 36 H 0.11 1.13 7.66 -2.38 -0.02 1.11 16 37 H 0.13 0.97 8.01 -2.39 -0.02 0.96 16 38 H 0.08 1.42 8.10 -2.38 -0.02 1.40 16 39 H 0.06 1.25 8.10 -2.39 -0.02 1.24 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.13 0.78 6.05 -2.39 -0.01 0.77 16 45 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -77.30 382.11 1.87 -75.44 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.42 Total: 24.40 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.04 Total: -1.54 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.75 Total: -116.34 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.42 Total: -30.29 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.32 Total: -0.32 kcal Total: -77.30 1.87 -75.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700605728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.396 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds