Wall clock time and date at job start Tue Mar 31 2020 20:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46832 * 2 1 4 4 N 1.46503 * 109.46840 * 120.00425 * 2 1 3 5 5 C 1.36942 * 119.99595 * 274.99679 * 4 2 1 6 6 H 1.08001 * 120.00202 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99555 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99710 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46818 * 90.00418 * 9 7 5 11 11 H 1.48503 * 109.46918 * 209.99611 * 9 7 5 12 12 H 1.48494 * 109.47416 * 330.00461 * 9 7 5 13 13 C 1.53001 * 109.46804 * 240.00124 * 2 1 3 14 14 H 1.08998 * 109.51295 * 65.10433 * 13 2 1 15 15 C 1.53714 * 109.44058 * 185.38957 * 13 2 1 16 16 N 1.47151 * 108.16172 * 172.37651 * 15 13 2 17 17 C 1.34778 * 120.98208 * 129.43212 * 16 15 13 18 18 O 1.21278 * 119.99913 * 359.72100 * 17 16 15 19 19 C 1.50697 * 120.00043 * 179.71459 * 17 16 15 20 20 C 1.52997 * 109.47379 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47379 * 179.97438 * 20 19 17 22 22 C 1.33385 * 125.20045 * 90.00013 * 21 20 19 23 23 C 1.38424 * 114.92103 * 180.02562 * 22 21 20 24 24 C 1.33394 * 114.92041 * 359.97438 * 23 22 21 25 25 S 1.75884 * 125.20291 * 270.04439 * 21 20 19 26 26 C 1.47151 * 118.03516 * 309.15611 * 16 15 13 27 27 C 1.53289 * 108.38312 * 50.78368 * 26 16 15 28 28 O 1.42956 * 109.22945 * 307.70026 * 27 26 16 29 29 H 1.08997 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47194 * 299.99908 * 1 2 3 31 31 H 1.08999 * 109.46949 * 59.99976 * 1 2 3 32 32 H 0.96991 * 120.00070 * 95.00037 * 4 2 1 33 33 H 0.96997 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.83887 * 52.68963 * 15 13 2 35 35 H 1.09005 * 109.74676 * 292.00277 * 15 13 2 36 36 H 1.09000 * 109.47164 * 60.00008 * 19 17 16 37 37 H 1.09003 * 109.46997 * 300.00296 * 19 17 16 38 38 H 1.09007 * 109.46748 * 60.00346 * 20 19 17 39 39 H 1.08996 * 109.47430 * 300.00862 * 20 19 17 40 40 H 1.07999 * 122.54451 * 0.02562 * 22 21 20 41 41 H 1.08001 * 122.54347 * 179.97438 * 23 22 21 42 42 H 1.07995 * 125.20296 * 179.73420 * 24 23 22 43 43 H 1.08994 * 109.68133 * 170.51541 * 26 16 15 44 44 H 1.09006 * 109.67943 * 291.03054 * 26 16 15 45 45 H 1.09003 * 109.51223 * 67.62498 * 27 26 16 46 46 H 1.09004 * 109.51541 * 187.72248 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.7375 -0.0054 4.6430 9 14 3.0564 -2.4744 3.4250 10 1 4.4891 -2.6166 3.0607 11 1 2.8175 -3.1044 4.7484 12 1 2.2162 -3.1430 2.3994 13 6 2.0400 -0.7212 -1.2493 14 1 1.7536 -0.1579 -2.1373 15 6 3.5711 -0.8398 -1.1824 16 7 4.0141 -1.6931 -2.2964 17 6 4.9985 -1.2948 -3.1265 18 8 5.5296 -0.2167 -2.9639 19 6 5.4392 -2.1892 -4.2565 20 6 6.5608 -1.5052 -5.0406 21 6 7.0019 -2.3998 -6.1702 22 6 6.4878 -2.3944 -7.4010 23 6 7.0537 -3.3080 -8.2735 24 6 8.0277 -4.0550 -7.7513 25 16 8.2727 -3.6114 -6.0670 26 6 3.3550 -2.9967 -2.4737 27 6 1.8381 -2.7754 -2.4743 28 8 1.4705 -2.0311 -1.3104 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.0608 -0.4627 5.4349 34 1 3.8662 -1.2906 -0.2348 35 1 4.0215 0.1485 -1.2754 36 1 4.5955 -2.3785 -4.9202 37 1 5.8022 -3.1339 -3.8517 38 1 7.4046 -1.3155 -4.3771 39 1 6.1975 -0.5606 -5.4453 40 1 5.6905 -1.7278 -7.6947 41 1 6.7310 -3.4085 -9.2993 42 1 8.5780 -4.8190 -8.2803 43 1 3.6621 -3.4375 -3.4220 44 1 3.6292 -3.6612 -1.6542 45 1 1.5516 -2.2198 -3.3672 46 1 1.3295 -3.7394 -2.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700605729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:54 Heat of formation + Delta-G solvation = -29.494542 kcal Electronic energy + Delta-G solvation = -27187.326665 eV Core-core repulsion = 23397.316682 eV Total energy + Delta-G solvation = -3790.009983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45361 -38.73061 -38.11277 -35.69458 -34.65281 -34.02710 -32.28695 -30.56318 -29.41590 -28.90950 -27.63743 -25.41917 -24.07287 -23.36411 -22.95879 -21.96140 -19.82003 -19.59100 -19.12997 -17.92998 -17.66936 -16.85278 -16.45865 -16.06115 -15.81720 -15.73853 -15.03108 -14.83648 -14.37552 -14.17644 -14.08941 -13.65766 -13.44501 -13.21940 -13.05153 -12.90080 -12.54408 -12.50864 -12.40142 -12.33361 -12.12970 -11.86631 -11.62165 -11.40314 -11.32109 -10.99491 -10.94120 -10.86260 -10.60511 -10.32931 -10.07887 -9.97187 -9.79330 -9.55112 -8.99058 -8.94439 -8.82234 -8.50503 -7.23968 -5.74620 -3.09674 0.63868 1.28960 1.67010 2.38164 2.52932 2.83729 3.39540 3.44584 3.47192 3.82439 4.15684 4.59267 4.61838 4.66424 4.68797 4.70808 4.75945 4.88825 4.98004 5.08348 5.16457 5.19628 5.21836 5.26290 5.35890 5.46433 5.53110 5.56352 5.62538 5.67169 5.74461 5.81460 5.87399 5.94896 6.13083 6.15050 6.21797 6.29611 6.41185 6.49152 6.72468 7.06167 7.28616 7.31522 8.01743 8.06713 8.44578 9.23547 9.95679 10.16450 11.43705 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.002497 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.709092 B =11211.423717 C =11783.629507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.069 0.931 4 N -0.743 5.743 5 C -0.241 4.241 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.075 3.925 14 H 0.061 0.939 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.514 3.486 18 O -0.538 6.538 19 C -0.134 4.134 20 C -0.035 4.035 21 C -0.169 4.169 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.218 4.218 25 S 0.097 5.903 26 C 0.069 3.931 27 C 0.047 3.953 28 O -0.363 6.363 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -9.762 -27.607 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.386 5.386 5 C -0.371 4.371 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.015 3.985 14 H 0.079 0.921 15 C -0.037 4.037 16 N -0.349 5.349 17 C 0.302 3.698 18 O -0.415 6.415 19 C -0.174 4.174 20 C -0.074 4.074 21 C -0.287 4.287 22 C -0.172 4.172 23 C -0.164 4.164 24 C -0.354 4.354 25 S 0.361 5.639 26 C -0.054 4.054 27 C -0.031 4.031 28 O -0.282 6.282 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.180 0.820 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.856 -9.579 -26.055 28.594 hybrid contribution -0.472 -1.028 -1.302 1.725 sum 6.384 -10.607 -27.357 30.027 Atomic orbital electron populations 1.22295 0.97947 1.01614 1.00114 1.20245 0.93024 0.94895 0.84056 0.91281 1.42766 1.79430 1.09581 1.06868 1.19074 1.36790 0.95494 0.85766 0.89131 1.24643 1.01489 0.97328 0.95552 1.69699 1.52665 1.35548 1.00236 0.86617 0.78430 0.87119 0.76920 1.21221 1.21831 1.19927 1.23063 0.91491 0.84078 0.99828 0.92139 1.22514 0.94997 0.97039 0.89141 1.48272 1.36739 1.19219 1.30709 1.20581 0.79155 0.87212 0.82860 1.90719 1.54886 1.23022 1.72869 1.21700 0.99955 0.99566 0.96185 1.19887 0.98111 0.96357 0.93079 1.24558 1.01709 1.03038 0.99353 1.20168 1.02814 1.01631 0.92578 1.20184 0.97696 0.97213 1.01267 1.25631 1.04988 1.06823 0.97957 1.84445 1.36387 1.33369 1.09719 1.22502 0.94393 0.85391 1.03139 1.22894 0.93215 0.97503 0.89475 1.88084 1.70794 1.27497 1.41791 0.92595 0.92327 0.94544 0.80083 0.93112 0.89202 0.88036 0.88598 0.88737 0.89757 0.88980 0.84234 0.84353 0.82008 0.89102 0.90247 0.93006 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.30 37.16 0.35 -2.48 16 2 C 0.19 3.55 2.81 -67.92 -0.19 3.36 16 3 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 4 N -0.74 -17.23 4.05 -53.42 -0.22 -17.45 16 5 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 9 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.58 6.52 56.52 0.37 -6.21 16 13 C 0.07 1.18 2.59 -26.36 -0.07 1.11 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.08 1.39 5.83 -3.32 -0.02 1.37 16 16 N -0.62 -8.18 3.01 -172.02 -0.52 -8.70 16 17 C 0.51 6.79 7.71 -10.99 -0.08 6.70 16 18 O -0.54 -9.14 15.45 5.56 0.09 -9.06 16 19 C -0.13 -1.19 4.06 -27.89 -0.11 -1.30 16 20 C -0.03 -0.32 5.00 -27.89 -0.14 -0.46 16 21 C -0.17 -1.44 5.76 -36.01 -0.21 -1.65 16 22 C -0.14 -1.09 10.05 -41.21 -0.41 -1.51 16 23 C -0.13 -0.93 10.18 -41.21 -0.42 -1.35 16 24 C -0.22 -1.53 11.23 29.04 0.33 -1.21 16 25 S 0.10 0.79 23.33 -107.50 -2.51 -1.72 16 26 C 0.07 0.70 6.54 -3.54 -0.02 0.67 16 27 C 0.05 0.50 6.98 37.31 0.26 0.76 16 28 O -0.36 -5.56 9.24 -35.23 -0.33 -5.88 16 29 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.37 8.56 4.93 -40.82 -0.20 8.36 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 34 H 0.09 1.70 6.94 -51.93 -0.36 1.34 16 35 H 0.10 1.78 7.08 -51.93 -0.37 1.42 16 36 H 0.10 0.67 7.66 -51.93 -0.40 0.27 16 37 H 0.09 0.74 8.02 -51.93 -0.42 0.33 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.09 0.61 6.05 -51.93 -0.31 0.30 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -33.76 383.36 -9.75 -43.51 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.11 Total: 7.37 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.00 Total: -2.78 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.04 Total: -54.72 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.24 Total: -14.94 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.76 -9.75 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700605729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.016 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds