Wall clock time and date at job start Tue Mar 31 2020 20:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46832 * 2 1 4 4 N 1.46503 * 109.46840 * 120.00425 * 2 1 3 5 5 C 1.36942 * 119.99595 * 274.99679 * 4 2 1 6 6 H 1.08001 * 120.00202 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99555 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99710 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46818 * 90.00418 * 9 7 5 11 11 H 1.48503 * 109.46918 * 209.99611 * 9 7 5 12 12 H 1.48494 * 109.47416 * 330.00461 * 9 7 5 13 13 C 1.53001 * 109.46804 * 240.00124 * 2 1 3 14 14 H 1.08998 * 109.51295 * 65.10433 * 13 2 1 15 15 C 1.53714 * 109.44058 * 185.38957 * 13 2 1 16 16 N 1.47151 * 108.16172 * 172.37651 * 15 13 2 17 17 C 1.34778 * 120.98208 * 129.43212 * 16 15 13 18 18 O 1.21278 * 119.99913 * 359.72100 * 17 16 15 19 19 C 1.50697 * 120.00043 * 179.71459 * 17 16 15 20 20 C 1.52997 * 109.47379 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47379 * 179.97438 * 20 19 17 22 22 C 1.33385 * 125.20045 * 90.00013 * 21 20 19 23 23 C 1.38424 * 114.92103 * 180.02562 * 22 21 20 24 24 C 1.33394 * 114.92041 * 359.97438 * 23 22 21 25 25 S 1.75884 * 125.20291 * 270.04439 * 21 20 19 26 26 C 1.47151 * 118.03516 * 309.15611 * 16 15 13 27 27 C 1.53289 * 108.38312 * 50.78368 * 26 16 15 28 28 O 1.42956 * 109.22945 * 307.70026 * 27 26 16 29 29 H 1.08997 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47194 * 299.99908 * 1 2 3 31 31 H 1.08999 * 109.46949 * 59.99976 * 1 2 3 32 32 H 0.96991 * 120.00070 * 95.00037 * 4 2 1 33 33 H 0.96997 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.83887 * 52.68963 * 15 13 2 35 35 H 1.09005 * 109.74676 * 292.00277 * 15 13 2 36 36 H 1.09000 * 109.47164 * 60.00008 * 19 17 16 37 37 H 1.09003 * 109.46997 * 300.00296 * 19 17 16 38 38 H 1.09007 * 109.46748 * 60.00346 * 20 19 17 39 39 H 1.08996 * 109.47430 * 300.00862 * 20 19 17 40 40 H 1.07999 * 122.54451 * 0.02562 * 22 21 20 41 41 H 1.08001 * 122.54347 * 179.97438 * 23 22 21 42 42 H 1.07995 * 125.20296 * 179.73420 * 24 23 22 43 43 H 1.08994 * 109.68133 * 170.51541 * 26 16 15 44 44 H 1.09006 * 109.67943 * 291.03054 * 26 16 15 45 45 H 1.09003 * 109.51223 * 67.62498 * 27 26 16 46 46 H 1.09004 * 109.51541 * 187.72248 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.7375 -0.0054 4.6430 9 14 3.0564 -2.4744 3.4250 10 1 4.4891 -2.6166 3.0607 11 1 2.8175 -3.1044 4.7484 12 1 2.2162 -3.1430 2.3994 13 6 2.0400 -0.7212 -1.2493 14 1 1.7536 -0.1579 -2.1373 15 6 3.5711 -0.8398 -1.1824 16 7 4.0141 -1.6931 -2.2964 17 6 4.9985 -1.2948 -3.1265 18 8 5.5296 -0.2167 -2.9639 19 6 5.4392 -2.1892 -4.2565 20 6 6.5608 -1.5052 -5.0406 21 6 7.0019 -2.3998 -6.1702 22 6 6.4878 -2.3944 -7.4010 23 6 7.0537 -3.3080 -8.2735 24 6 8.0277 -4.0550 -7.7513 25 16 8.2727 -3.6114 -6.0670 26 6 3.3550 -2.9967 -2.4737 27 6 1.8381 -2.7754 -2.4743 28 8 1.4705 -2.0311 -1.3104 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.0608 -0.4627 5.4349 34 1 3.8662 -1.2906 -0.2348 35 1 4.0215 0.1485 -1.2754 36 1 4.5955 -2.3785 -4.9202 37 1 5.8022 -3.1339 -3.8517 38 1 7.4046 -1.3155 -4.3771 39 1 6.1975 -0.5606 -5.4453 40 1 5.6905 -1.7278 -7.6947 41 1 6.7310 -3.4085 -9.2993 42 1 8.5780 -4.8190 -8.2803 43 1 3.6621 -3.4375 -3.4220 44 1 3.6292 -3.6612 -1.6542 45 1 1.5516 -2.2198 -3.3672 46 1 1.3295 -3.7394 -2.4666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700605729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:53 Heat of formation + Delta-G solvation = -51.125995 kcal Electronic energy + Delta-G solvation = -27188.264675 eV Core-core repulsion = 23397.316682 eV Total energy + Delta-G solvation = -3790.947993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51631 -39.79996 -38.75542 -37.25494 -35.80812 -34.77267 -34.19504 -32.02906 -30.63021 -30.04787 -28.62084 -26.30167 -25.43309 -24.82330 -23.82736 -22.96438 -21.33248 -20.21778 -20.10298 -19.73686 -18.63875 -17.67226 -17.63157 -17.03172 -16.91722 -16.48500 -16.32747 -16.08944 -15.87781 -15.22173 -15.12678 -14.97805 -14.63142 -14.31713 -14.16571 -14.06568 -13.72008 -13.63871 -13.37465 -13.24243 -13.06859 -13.02482 -12.86496 -12.69540 -12.55402 -12.48577 -12.07788 -12.03030 -11.81433 -11.74618 -11.58834 -11.58004 -11.14979 -11.00178 -10.85596 -9.64753 -9.56064 -9.40033 -9.26613 -8.00686 -5.32339 0.08435 0.72561 1.12971 1.36345 1.38541 1.46765 1.52461 1.76693 1.92111 2.48797 2.76162 3.32033 3.35022 3.54098 3.76325 3.87198 3.94232 3.94953 4.02221 4.12896 4.14688 4.24300 4.29680 4.34652 4.46525 4.55728 4.62577 4.63715 4.73041 4.76828 4.80509 4.84364 4.87479 4.98856 5.03565 5.04619 5.20274 5.26120 5.30559 5.41486 5.58044 5.62343 5.79284 6.19696 6.27281 6.30800 7.05159 7.10014 7.86147 8.06436 9.21050 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.002497 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.709092 B =11211.423717 C =11783.629507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.060 0.940 4 N -0.743 5.743 5 C -0.221 4.221 6 H 0.059 0.941 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.251 1.251 13 C 0.093 3.907 14 H 0.083 0.917 15 C 0.089 3.911 16 N -0.615 5.615 17 C 0.509 3.491 18 O -0.585 6.585 19 C -0.121 4.121 20 C -0.029 4.029 21 C -0.182 4.182 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.215 4.215 25 S 0.072 5.928 26 C 0.066 3.934 27 C 0.041 3.959 28 O -0.386 6.386 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.367 0.633 33 H 0.256 0.744 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.133 0.867 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -12.597 -31.467 34.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 H 0.077 0.923 4 N -0.387 5.387 5 C -0.352 4.352 6 H 0.077 0.923 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.176 1.176 13 C 0.034 3.966 14 H 0.100 0.900 15 C -0.034 4.034 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.161 4.161 20 C -0.069 4.069 21 C -0.300 4.300 22 C -0.169 4.169 23 C -0.170 4.170 24 C -0.350 4.350 25 S 0.335 5.665 26 C -0.056 4.056 27 C -0.036 4.036 28 O -0.304 6.304 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.200 0.800 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.155 -12.448 -29.990 33.050 hybrid contribution -0.270 -0.077 -0.238 0.368 sum 5.885 -12.526 -30.228 33.246 Atomic orbital electron populations 1.22124 0.96460 1.01598 1.00577 1.20487 0.93964 0.94713 0.84055 0.92257 1.42713 1.79708 1.09548 1.06726 1.19041 1.34399 0.94392 0.87359 0.92268 1.25420 1.02756 1.02148 0.95290 1.69877 1.55036 1.37550 1.01113 0.85494 0.78332 0.81550 0.76985 1.20978 1.22393 1.17596 1.22669 0.90541 0.84971 0.98431 0.89952 1.22164 0.95627 0.96385 0.89248 1.48357 1.36944 1.19995 1.29569 1.21390 0.78242 0.87075 0.83341 1.90701 1.56324 1.25344 1.74150 1.21706 1.00793 0.98772 0.94779 1.19745 0.97574 0.96479 0.93127 1.24432 1.02465 1.03563 0.99492 1.20429 1.02775 1.01525 0.92192 1.20462 0.97520 0.96809 1.02229 1.25933 1.04950 1.07078 0.97045 1.84546 1.36889 1.33780 1.11310 1.22785 0.94000 0.83603 1.05231 1.23251 0.93599 0.98374 0.88390 1.88035 1.70956 1.27053 1.44386 0.92731 0.94759 0.91171 0.79921 0.93528 0.92219 0.90216 0.85509 0.87082 0.91768 0.89673 0.82886 0.82194 0.80044 0.84940 0.90666 0.91189 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.30 71.99 0.67 -4.40 16 2 C 0.18 6.62 2.81 44.99 0.13 6.75 16 3 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 4 N -0.74 -34.69 4.05 -322.92 -1.31 -36.00 16 5 C -0.22 -12.64 10.41 84.03 0.87 -11.77 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 9 Si 0.95 46.73 27.74 68.60 1.90 48.63 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.25 -11.31 6.52 99.48 0.65 -10.67 16 13 C 0.09 2.79 2.59 30.83 0.08 2.87 16 14 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.09 2.91 5.83 86.50 0.50 3.41 16 16 N -0.62 -15.20 3.01 -816.55 -2.46 -17.66 16 17 C 0.51 12.76 7.71 87.66 0.68 13.43 16 18 O -0.58 -20.16 15.45 -3.02 -0.05 -20.20 16 19 C -0.12 -1.81 4.06 29.85 0.12 -1.69 16 20 C -0.03 -0.51 5.00 29.85 0.15 -0.36 16 21 C -0.18 -2.74 5.76 24.59 0.14 -2.60 16 22 C -0.14 -1.74 10.05 21.22 0.21 -1.53 16 23 C -0.14 -1.52 10.18 21.22 0.22 -1.30 16 24 C -0.21 -2.44 11.23 66.72 0.75 -1.69 16 25 S 0.07 1.05 23.33 -56.49 -1.32 -0.27 16 26 C 0.07 1.07 6.54 86.35 0.56 1.63 16 27 C 0.04 0.68 6.98 72.08 0.50 1.18 16 28 O -0.39 -10.64 9.24 -148.98 -1.38 -12.01 16 29 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.37 16.92 4.93 -92.72 -0.46 16.46 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.06 2.29 6.94 -2.38 -0.02 2.27 16 35 H 0.08 2.91 7.08 -2.38 -0.02 2.89 16 36 H 0.13 1.17 7.66 -2.39 -0.02 1.15 16 37 H 0.11 1.37 8.02 -2.39 -0.02 1.35 16 38 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 39 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.13 1.05 6.05 -2.39 -0.01 1.04 16 44 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.13 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.22 383.36 2.21 -75.01 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.46 Total: 25.94 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.06 Total: 0.50 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -3.47 Total: -117.59 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.42 Total: -32.22 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.90 Total: 48.63 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.32 Total: -0.27 kcal Total: -77.22 2.21 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700605729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.880 kcal (2) G-P(sol) polarization free energy of solvation -77.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds