Wall clock time and date at job start Tue Mar 31 2020 20:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.47200 * 109.47192 * 119.99635 * 2 1 3 5 5 C 2.64605 * 109.47149 * 119.99547 * 2 1 3 6 6 C 4.07803 * 109.47103 * 119.99638 * 2 1 3 7 7 O 1.21613 * 119.99971 * 282.79622 * 6 5 4 8 8 N 1.34772 * 119.99873 * 102.80055 * 6 5 4 9 9 C 1.47066 * 136.05397 * 179.97438 * 8 6 5 10 10 C 1.53503 * 87.98596 * 152.84244 * 9 8 6 11 11 C 1.53001 * 114.20744 * 139.64985 * 10 9 8 12 12 H 1.09000 * 109.47030 * 300.00664 * 11 10 9 13 13 C 1.52998 * 109.46890 * 60.00530 * 11 10 9 14 14 N 1.46495 * 109.46919 * 179.97438 * 11 10 9 15 15 C 1.34784 * 119.99624 * 155.00267 * 14 11 10 16 16 O 1.21282 * 119.99984 * 0.02562 * 15 14 11 17 17 C 1.50704 * 119.99678 * 180.02562 * 15 14 11 18 18 S 1.81001 * 109.46728 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99800 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00197 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99957 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00101 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00015 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47186 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47157 * 120.00140 * 23 21 19 26 26 H 1.48499 * 109.46843 * 240.00035 * 23 21 19 27 27 C 1.47060 * 136.06000 * 359.94706 * 8 6 5 28 28 H 1.08998 * 109.47354 * 300.00076 * 1 2 3 29 29 H 1.09002 * 109.47123 * 60.00274 * 1 2 3 30 30 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47718 * 239.99535 * 2 1 3 32 32 H 1.09010 * 109.47250 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47028 * 299.99252 * 3 2 1 34 34 H 1.09003 * 109.47646 * 59.99905 * 3 2 1 35 35 H 1.09000 * 113.46827 * 267.61848 * 9 8 6 36 36 H 1.09003 * 113.47151 * 38.06638 * 9 8 6 37 37 H 1.08995 * 114.20536 * 272.48261 * 10 9 8 38 38 H 1.09006 * 109.47379 * 59.99553 * 13 11 10 39 39 H 1.08998 * 109.47601 * 179.97438 * 13 11 10 40 40 H 1.09005 * 109.47164 * 299.99772 * 13 11 10 41 41 H 0.96998 * 120.00269 * 335.00958 * 14 11 10 42 42 H 1.08996 * 109.47139 * 299.99848 * 17 15 14 43 43 H 1.08996 * 109.46921 * 60.00503 * 17 15 14 44 44 H 0.96995 * 120.00199 * 180.02562 * 22 21 19 45 45 H 1.09007 * 113.46761 * 321.93701 * 27 8 6 46 46 H 1.08996 * 113.47187 * 92.31935 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1606 6 6 2.8893 -1.9222 3.3298 7 8 2.4174 -1.6588 4.4193 8 7 3.8616 -2.8493 3.2229 9 6 4.5935 -3.7276 4.1480 10 6 4.7965 -4.7004 2.9781 11 6 6.1858 -5.3391 2.9270 12 1 6.9409 -4.5591 2.8289 13 6 6.4320 -6.1282 4.2144 14 7 6.2653 -6.2439 1.7776 15 6 7.4612 -6.5257 1.2233 16 8 8.4714 -6.0306 1.6764 17 6 7.5429 -7.4560 0.0405 18 16 9.2704 -7.6316 -0.4706 19 6 9.0767 -8.7374 -1.8287 20 1 8.0927 -9.0873 -2.1041 21 6 10.1887 -9.1587 -2.5446 22 7 11.3879 -8.7327 -2.2086 23 14 9.9833 -10.3304 -3.9849 24 1 8.5448 -10.6576 -4.1556 25 1 10.4956 -9.6886 -5.2220 26 1 10.7461 -11.5770 -3.7215 27 6 4.6572 -3.4283 2.1300 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 5.5224 -3.2922 4.5165 36 1 3.9713 -4.1325 4.9462 37 1 3.9854 -5.4165 2.8465 38 1 5.6768 -6.9082 4.3126 39 1 7.4216 -6.5836 4.1780 40 1 6.3726 -5.4553 5.0700 41 1 5.4574 -6.6401 1.4154 42 1 7.1446 -8.4320 0.3177 43 1 6.9601 -7.0467 -0.7846 44 1 12.1649 -9.0268 -2.7091 45 1 4.0890 -3.5786 1.2119 46 1 5.6024 -2.9127 1.9608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701326618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:19 Heat of formation + Delta-G solvation = 4.178690 kcal Electronic energy + Delta-G solvation = -25266.654465 eV Core-core repulsion = 21478.104663 eV Total energy + Delta-G solvation = -3788.549802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04940 -39.33143 -38.26767 -36.84313 -35.11227 -32.55635 -32.45816 -31.58544 -29.43796 -28.48455 -27.73558 -26.57877 -25.51534 -24.77104 -23.37343 -21.53748 -20.61227 -20.09295 -18.35165 -17.86738 -16.99786 -16.85351 -16.39227 -16.23126 -15.45460 -15.14745 -15.02044 -14.83323 -14.48155 -14.14804 -14.10600 -13.85767 -13.58835 -13.25456 -13.08393 -12.82609 -12.78446 -12.60886 -12.60312 -12.51592 -12.07201 -12.00273 -11.93369 -11.79505 -11.17892 -11.09770 -11.05219 -11.01489 -10.80411 -10.74899 -10.72934 -10.47282 -9.83507 -9.45680 -9.19499 -9.10916 -8.98032 -8.26701 -6.53272 -6.24852 -3.95428 1.19403 1.81832 2.46095 2.94412 3.03240 3.16356 3.19233 3.25154 3.29346 3.49778 3.60400 3.90026 4.17398 4.35779 4.38894 4.44128 4.55992 4.58310 4.76843 4.78625 5.00444 5.04244 5.08372 5.10497 5.11584 5.13166 5.22829 5.24543 5.25721 5.29201 5.37291 5.48445 5.53383 5.63110 5.66242 5.66668 5.68726 5.84714 5.93457 6.10021 6.14299 6.57511 6.85348 7.17102 7.56928 7.63972 7.65943 8.32374 8.55476 9.20800 10.82586 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.001983 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.046124 B =14113.839115 C =15911.797058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.223 4.223 6 C 0.664 3.336 7 O -0.525 6.525 8 N -0.640 5.640 9 C 0.120 3.880 10 C -0.132 4.132 11 C 0.157 3.843 12 H 0.094 0.906 13 C -0.165 4.165 14 N -0.735 5.735 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.105 3.895 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.083 0.917 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.735 14.091 6.951 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.204 4.204 4 C -0.070 4.070 5 C -0.226 4.226 6 C 0.455 3.545 7 O -0.402 6.402 8 N -0.375 5.375 9 C -0.002 4.002 10 C -0.151 4.151 11 C 0.051 3.949 12 H 0.112 0.888 13 C -0.223 4.223 14 N -0.389 5.389 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.268 15.231 8.297 25.925 hybrid contribution -1.633 -1.539 -1.675 2.801 sum -20.902 13.692 6.622 25.850 Atomic orbital electron populations 1.21855 0.92681 1.02893 1.02987 1.18560 0.96405 0.95410 0.90757 1.21853 1.01860 0.93706 1.02994 1.22671 0.95337 0.94588 0.94415 1.20449 1.03753 1.02697 0.95710 1.14003 0.78497 0.76935 0.85086 1.90869 1.58312 1.63760 1.27292 1.49337 1.35558 1.39062 1.13517 1.23009 0.96083 0.87027 0.94104 1.23292 0.98913 0.95837 0.97070 1.20747 0.94834 0.92774 0.86503 0.88819 1.22191 1.03164 1.00626 0.96351 1.46065 1.09488 1.49896 1.33459 1.20308 0.82743 0.81195 0.83718 1.90706 1.34589 1.51187 1.62510 1.23537 1.08439 1.00619 0.97876 1.85402 0.97202 1.61582 1.39201 1.22904 0.96178 1.32227 1.17026 0.90880 1.24998 0.94469 0.96466 0.97697 1.70021 0.98147 1.42561 1.39519 0.86117 0.78360 0.79992 0.81029 1.19624 1.20562 1.20570 1.23234 0.95521 0.90847 0.92201 0.91904 0.91016 0.91952 0.87872 0.91864 0.90964 0.91934 0.88726 0.89489 0.86910 0.92291 0.91273 0.91698 0.76797 0.89218 0.89241 0.92219 0.89904 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.15 37.16 0.34 -0.37 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16 3 C -0.15 -0.72 9.15 37.16 0.34 -0.38 16 4 C -0.07 -0.62 12.56 -37.12 -0.47 -1.09 16 5 C -0.22 -2.52 13.42 -38.84 -0.52 -3.05 16 6 C 0.66 8.38 7.90 -14.34 -0.11 8.26 16 7 O -0.52 -8.35 17.86 5.27 0.09 -8.26 16 8 N -0.64 -6.28 3.69 -188.12 -0.69 -6.97 16 9 C 0.12 0.91 7.27 -8.51 -0.06 0.85 16 10 C -0.13 -0.90 3.66 -90.09 -0.33 -1.23 16 11 C 0.16 1.46 2.47 -67.93 -0.17 1.29 16 12 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 13 C -0.16 -1.49 9.29 37.16 0.35 -1.14 16 14 N -0.73 -8.18 5.08 -53.81 -0.27 -8.45 16 15 C 0.53 8.99 7.81 -10.98 -0.09 8.90 16 16 O -0.52 -10.79 15.53 5.56 0.09 -10.70 16 17 C -0.15 -2.91 6.16 36.01 0.22 -2.68 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.10 0.81 7.94 -8.50 -0.07 0.74 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.46 7.48 -51.93 -0.39 0.08 16 41 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 LS Contribution 411.44 15.07 6.20 6.20 Total: -1.00 -36.62 411.44 -9.18 -45.81 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.42 Total: -2.03 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.68 Total: -2.80 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.23 Total: -40.40 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.62 -9.18 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701326618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.984 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds