Wall clock time and date at job start Tue Mar 31 2020 20:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.47200 * 109.47192 * 119.99635 * 2 1 3 5 5 C 2.64605 * 109.47149 * 119.99547 * 2 1 3 6 6 C 4.07803 * 109.47103 * 119.99638 * 2 1 3 7 7 O 1.21613 * 119.99971 * 282.79622 * 6 5 4 8 8 N 1.34772 * 119.99873 * 102.80055 * 6 5 4 9 9 C 1.47066 * 136.05397 * 179.97438 * 8 6 5 10 10 C 1.53503 * 87.98596 * 152.84244 * 9 8 6 11 11 C 1.53001 * 114.20744 * 139.64985 * 10 9 8 12 12 H 1.09000 * 109.47030 * 300.00664 * 11 10 9 13 13 C 1.52998 * 109.46890 * 60.00530 * 11 10 9 14 14 N 1.46495 * 109.46919 * 179.97438 * 11 10 9 15 15 C 1.34784 * 119.99624 * 155.00267 * 14 11 10 16 16 O 1.21282 * 119.99984 * 0.02562 * 15 14 11 17 17 C 1.50704 * 119.99678 * 180.02562 * 15 14 11 18 18 S 1.81001 * 109.46728 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99800 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00197 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99957 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00101 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00015 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47186 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47157 * 120.00140 * 23 21 19 26 26 H 1.48499 * 109.46843 * 240.00035 * 23 21 19 27 27 C 1.47060 * 136.06000 * 359.94706 * 8 6 5 28 28 H 1.08998 * 109.47354 * 300.00076 * 1 2 3 29 29 H 1.09002 * 109.47123 * 60.00274 * 1 2 3 30 30 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47718 * 239.99535 * 2 1 3 32 32 H 1.09010 * 109.47250 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47028 * 299.99252 * 3 2 1 34 34 H 1.09003 * 109.47646 * 59.99905 * 3 2 1 35 35 H 1.09000 * 113.46827 * 267.61848 * 9 8 6 36 36 H 1.09003 * 113.47151 * 38.06638 * 9 8 6 37 37 H 1.08995 * 114.20536 * 272.48261 * 10 9 8 38 38 H 1.09006 * 109.47379 * 59.99553 * 13 11 10 39 39 H 1.08998 * 109.47601 * 179.97438 * 13 11 10 40 40 H 1.09005 * 109.47164 * 299.99772 * 13 11 10 41 41 H 0.96998 * 120.00269 * 335.00958 * 14 11 10 42 42 H 1.08996 * 109.47139 * 299.99848 * 17 15 14 43 43 H 1.08996 * 109.46921 * 60.00503 * 17 15 14 44 44 H 0.96995 * 120.00199 * 180.02562 * 22 21 19 45 45 H 1.09007 * 113.46761 * 321.93701 * 27 8 6 46 46 H 1.08996 * 113.47187 * 92.31935 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1606 6 6 2.8893 -1.9222 3.3298 7 8 2.4174 -1.6588 4.4193 8 7 3.8616 -2.8493 3.2229 9 6 4.5935 -3.7276 4.1480 10 6 4.7965 -4.7004 2.9781 11 6 6.1858 -5.3391 2.9270 12 1 6.9409 -4.5591 2.8289 13 6 6.4320 -6.1282 4.2144 14 7 6.2653 -6.2439 1.7776 15 6 7.4612 -6.5257 1.2233 16 8 8.4714 -6.0306 1.6764 17 6 7.5429 -7.4560 0.0405 18 16 9.2704 -7.6316 -0.4706 19 6 9.0767 -8.7374 -1.8287 20 1 8.0927 -9.0873 -2.1041 21 6 10.1887 -9.1587 -2.5446 22 7 11.3879 -8.7327 -2.2086 23 14 9.9833 -10.3304 -3.9849 24 1 8.5448 -10.6576 -4.1556 25 1 10.4956 -9.6886 -5.2220 26 1 10.7461 -11.5770 -3.7215 27 6 4.6572 -3.4283 2.1300 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 5.5224 -3.2922 4.5165 36 1 3.9713 -4.1325 4.9462 37 1 3.9854 -5.4165 2.8465 38 1 5.6768 -6.9082 4.3126 39 1 7.4216 -6.5836 4.1780 40 1 6.3726 -5.4553 5.0700 41 1 5.4574 -6.6401 1.4154 42 1 7.1446 -8.4320 0.3177 43 1 6.9601 -7.0467 -0.7846 44 1 12.1649 -9.0268 -2.7091 45 1 4.0890 -3.5786 1.2119 46 1 5.6024 -2.9127 1.9608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701326618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:18 Heat of formation + Delta-G solvation = -20.446163 kcal Electronic energy + Delta-G solvation = -25267.722278 eV Core-core repulsion = 21478.104663 eV Total energy + Delta-G solvation = -3789.617616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84140 -40.54069 -39.24761 -37.37252 -36.18627 -34.56304 -33.33940 -32.62903 -30.48061 -29.56639 -28.10417 -27.65379 -27.23667 -25.52674 -24.07821 -22.30601 -21.61081 -21.02700 -19.76642 -19.07175 -17.93194 -17.73952 -17.69073 -16.86213 -16.83462 -16.45637 -16.35684 -15.93425 -15.57644 -15.20643 -14.99692 -14.63352 -14.58904 -14.37948 -14.25052 -13.97021 -13.61928 -13.31283 -13.20369 -13.13960 -13.12956 -12.98925 -12.90117 -12.79897 -12.56736 -12.48767 -12.37435 -11.95250 -11.75957 -11.64334 -11.53666 -11.43200 -11.23155 -11.14071 -10.86118 -10.22974 -10.08101 -9.97079 -8.62978 -8.32939 -6.09852 0.36580 1.07523 1.30089 1.42530 1.49685 1.59987 1.68092 1.70980 2.25369 2.30597 2.35310 2.83476 3.01428 3.15140 3.36515 3.67383 3.78001 3.93123 4.01096 4.05871 4.12196 4.12872 4.28349 4.34954 4.41254 4.43624 4.45615 4.50518 4.57397 4.63093 4.69122 4.74618 4.82306 4.89857 4.90585 5.00687 5.08042 5.15439 5.28252 5.30187 5.36757 5.44524 5.57286 6.11493 6.22122 6.36077 6.58286 6.77873 7.08983 7.32786 8.76294 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.001983 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.046124 B =14113.839115 C =15911.797058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.146 4.146 4 C -0.041 4.041 5 C -0.273 4.273 6 C 0.659 3.341 7 O -0.573 6.573 8 N -0.640 5.640 9 C 0.115 3.885 10 C -0.108 4.108 11 C 0.160 3.840 12 H 0.077 0.923 13 C -0.162 4.162 14 N -0.707 5.707 15 C 0.538 3.462 16 O -0.563 6.563 17 C -0.131 4.131 18 S -0.153 6.153 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.276 1.276 27 C 0.102 3.898 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.085 0.915 41 H 0.417 0.583 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.094 0.906 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.283 13.594 5.453 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.043 4.043 5 C -0.276 4.276 6 C 0.451 3.549 7 O -0.454 6.454 8 N -0.372 5.372 9 C -0.007 4.007 10 C -0.127 4.127 11 C 0.054 3.946 12 H 0.096 0.904 13 C -0.220 4.220 14 N -0.361 5.361 15 C 0.324 3.676 16 O -0.441 6.441 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.254 0.746 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.856 14.714 6.795 27.210 hybrid contribution -0.923 -1.310 -1.173 1.986 sum -22.779 13.404 5.622 27.021 Atomic orbital electron populations 1.21867 0.91723 1.02959 1.03704 1.18888 0.97109 0.95708 0.89804 1.21869 1.01545 0.93145 1.03741 1.23491 0.93465 0.92968 0.94383 1.20540 1.05815 1.04583 0.96633 1.14226 0.78719 0.77102 0.84897 1.90823 1.60170 1.65526 1.28912 1.49416 1.34731 1.38052 1.15024 1.23208 0.96356 0.86781 0.94377 1.23118 0.97765 0.95520 0.96331 1.20815 0.95910 0.92066 0.85765 0.90439 1.22160 1.01744 1.01335 0.96781 1.45779 1.08321 1.48984 1.33047 1.19968 0.83675 0.80716 0.83270 1.90702 1.36601 1.53051 1.63786 1.23388 1.02816 1.02519 0.99483 1.85579 1.04881 1.62052 1.40030 1.23240 0.96750 1.32104 1.17057 0.89893 1.26113 0.94004 0.98300 1.00844 1.70185 0.99186 1.44257 1.41170 0.84925 0.79065 0.77251 0.76832 1.17964 1.20013 1.20134 1.23385 0.95357 0.90857 0.92381 0.92780 0.88748 0.92231 0.85827 0.92392 0.88705 0.92747 0.87888 0.88762 0.84711 0.90635 0.94489 0.89634 0.74571 0.87340 0.87119 0.92072 0.88741 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.15 71.98 0.66 -0.44 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.02 16 3 C -0.15 -1.16 9.15 71.98 0.66 -0.51 16 4 C -0.04 -0.71 12.56 31.12 0.39 -0.32 16 5 C -0.27 -6.17 13.42 30.01 0.40 -5.77 16 6 C 0.66 16.84 7.90 85.49 0.68 17.51 16 7 O -0.57 -18.88 17.86 -4.07 -0.07 -18.95 16 8 N -0.64 -11.95 3.69 -867.33 -3.20 -15.15 16 9 C 0.11 1.55 7.27 83.18 0.60 2.15 16 10 C -0.11 -1.19 3.66 -10.45 -0.04 -1.23 16 11 C 0.16 2.65 2.47 44.99 0.11 2.76 16 12 H 0.08 1.63 7.33 -2.39 -0.02 1.61 16 13 C -0.16 -2.63 9.29 71.98 0.67 -1.96 16 14 N -0.71 -14.06 5.08 -442.53 -2.25 -16.31 16 15 C 0.54 17.58 7.81 87.66 0.68 18.27 16 16 O -0.56 -23.93 15.53 -3.03 -0.05 -23.98 16 17 C -0.13 -4.77 6.16 71.24 0.44 -4.33 16 18 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 19 C -0.54 -30.19 9.50 67.95 0.65 -29.55 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 23 Si 1.00 42.71 29.55 68.60 2.03 44.73 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 27 C 0.10 1.38 7.94 83.19 0.66 2.04 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.04 7.48 -2.38 -0.02 1.03 16 41 H 0.42 5.38 8.60 -92.71 -0.80 4.58 16 42 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 43 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 44 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.10 1.33 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -84.01 411.44 2.76 -81.25 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.18 Total: 12.81 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.99 Total: -0.24 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -5.16 Total: -86.29 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.12 Total: -42.93 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -84.01 2.76 -81.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701326618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.805 kcal (2) G-P(sol) polarization free energy of solvation -84.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds