Wall clock time and date at job start Tue Mar 31 2020 20:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47417 * 2 1 4 4 C 1.53001 * 109.47264 * 240.00075 * 2 1 3 5 5 C 1.52999 * 109.47090 * 175.00297 * 4 2 1 6 6 N 1.46500 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00201 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.47995 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.39903 * 120.94601 * 0.23534 * 9 7 6 11 11 C 1.38041 * 119.03426 * 180.27832 * 10 9 7 12 12 N 1.31859 * 120.98258 * 359.72512 * 11 10 9 13 13 C 1.31716 * 122.09710 * 0.02562 * 12 11 10 14 14 C 1.38538 * 120.84601 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.53935 * 179.97438 * 14 13 12 16 16 N 1.46907 * 109.47110 * 119.99837 * 2 1 3 17 17 C 1.46895 * 111.00083 * 274.99967 * 16 2 1 18 18 C 1.50696 * 109.47072 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00257 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99926 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00255 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99721 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00565 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00274 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47131 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47100 * 119.99975 * 25 23 21 28 28 H 1.48500 * 109.47228 * 239.99832 * 25 23 21 29 29 H 1.09003 * 109.47283 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.47302 * 59.99994 * 1 2 3 31 31 H 1.09005 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47038 * 54.99922 * 4 2 1 33 33 H 1.09005 * 109.46976 * 295.00152 * 4 2 1 34 34 H 1.08994 * 109.47487 * 59.99900 * 5 4 2 35 35 H 1.08999 * 109.46833 * 299.99422 * 5 4 2 36 36 H 0.97008 * 119.99993 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.48201 * 0.02562 * 10 9 7 38 38 H 1.08005 * 119.50718 * 179.75268 * 11 10 9 39 39 H 1.07998 * 119.58275 * 180.02562 * 13 12 11 40 40 H 1.00903 * 110.99684 * 151.04678 * 16 2 1 41 41 H 1.09003 * 109.47029 * 299.99989 * 17 16 2 42 42 H 1.08997 * 109.46860 * 60.00005 * 17 16 2 43 43 H 0.97001 * 120.00471 * 0.02562 * 20 18 17 44 44 H 0.96995 * 120.00218 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3044 -2.5094 7 6 5.3742 -1.3408 -2.7745 8 8 6.1601 -0.7999 -2.0218 9 6 5.8674 -2.0385 -3.9829 10 6 4.9798 -2.6626 -4.8660 11 6 5.4833 -3.3071 -5.9780 12 7 6.7798 -3.3355 -6.2171 13 6 7.6519 -2.7579 -5.4167 14 6 7.2358 -2.0893 -4.2769 15 9 8.1358 -1.4994 -3.4600 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5873 -0.5218 3.5560 19 8 2.8677 -1.6988 3.4703 20 7 2.7282 0.1205 4.7324 21 6 3.1880 -0.5566 5.8324 22 1 3.4369 -1.6048 5.7562 23 6 3.3328 0.1054 7.0454 24 7 3.0295 1.3807 7.1383 25 14 3.9586 -0.8173 8.5442 26 1 4.2273 -2.2312 8.1784 27 1 5.2123 -0.1846 9.0272 28 1 2.9343 -0.7694 9.6183 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.9994 -1.0728 -0.4259 35 1 3.8531 0.4370 -1.3573 36 1 3.4259 -1.7365 -3.1101 37 1 3.9164 -2.6441 -4.6782 38 1 4.8053 -3.7949 -6.6627 39 1 8.7048 -2.8059 -5.6520 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1182 42 1 1.0870 0.6163 2.5525 43 1 2.5043 1.0618 4.8010 44 1 3.1309 1.8429 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713405659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:20 Heat of formation + Delta-G solvation = -79.903280 kcal Electronic energy + Delta-G solvation = -27845.796933 eV Core-core repulsion = 23519.680638 eV Total energy + Delta-G solvation = -4326.116295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.34342 -40.95591 -39.59212 -38.48945 -37.22684 -35.08056 -33.90655 -33.35296 -31.57996 -31.45200 -31.06659 -29.14500 -26.47023 -25.64198 -24.29996 -23.92476 -23.04357 -21.38437 -20.42385 -19.28209 -18.76815 -17.89040 -17.85046 -17.71892 -16.49830 -16.44702 -16.09444 -15.92952 -15.75190 -15.23917 -14.99713 -14.95499 -14.49022 -14.28687 -14.03514 -13.89155 -13.86969 -13.67346 -13.57124 -13.13960 -12.70039 -12.53303 -12.21915 -11.89625 -11.75258 -11.61385 -11.36650 -11.31152 -11.08321 -10.88953 -10.71301 -10.53901 -10.32661 -10.20637 -10.08192 -9.59614 -9.50264 -9.45952 -8.44255 -8.08731 -7.94255 -6.40010 -3.80667 -0.02073 0.28453 2.38752 2.53817 3.12414 3.17979 3.28387 3.35920 3.37931 3.80090 3.92003 3.92772 4.02647 4.08442 4.14936 4.31131 4.49958 4.68890 4.77745 4.84970 4.98142 5.09456 5.11784 5.14818 5.26393 5.32651 5.33528 5.48332 5.64950 5.73584 5.78030 5.83652 5.90348 5.97702 5.99353 6.01835 6.23991 6.33559 6.97266 7.13395 7.21450 7.57308 7.63552 7.71518 8.08389 8.62978 9.19826 9.56175 10.07524 10.77838 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.002005 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.330762 B =13959.660576 C =15383.501519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.112 3.888 6 N -0.717 5.717 7 C 0.553 3.447 8 O -0.509 6.509 9 C -0.125 4.125 10 C -0.112 4.112 11 C 0.083 3.917 12 N -0.441 5.441 13 C 0.072 3.928 14 C 0.107 3.893 15 F -0.103 7.103 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -3.365 -28.528 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.171 4.171 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.338 3.662 8 O -0.384 6.384 9 C -0.137 4.137 10 C -0.133 4.133 11 C -0.073 4.073 12 N -0.150 5.150 13 C -0.087 4.087 14 C 0.084 3.916 15 F -0.081 7.081 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.167 0.833 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.015 -4.282 -28.366 28.688 hybrid contribution 0.407 1.140 1.308 1.782 sum 0.422 -3.142 -27.059 27.244 Atomic orbital electron populations 1.21784 0.94158 1.02544 1.01210 1.21456 0.96338 0.95826 0.88853 0.93653 1.21992 0.93296 1.03006 0.98771 1.21582 0.94575 0.97654 0.87322 1.45798 1.06733 1.57005 1.27459 1.17910 0.82916 0.80647 0.84748 1.90909 1.55049 1.44206 1.48216 1.20636 0.93124 1.02159 0.97781 1.22345 1.00891 0.95931 0.94111 1.22845 0.91799 0.96783 0.95854 1.67604 1.03441 1.15112 1.28825 1.23046 1.01307 0.94746 0.89605 1.18944 0.86314 0.95453 0.90843 1.91651 1.65388 1.80534 1.70529 1.60212 1.34919 1.32184 1.02796 1.21727 1.01310 0.93935 0.91325 1.19810 0.84923 0.88206 0.84450 1.90523 1.55305 1.16165 1.84756 1.41870 1.57759 1.12424 1.08011 1.19753 1.39775 0.96451 0.86768 0.87878 1.25267 0.97704 0.95800 0.99263 1.69620 1.48785 1.08849 1.27079 0.85797 0.78218 0.79638 0.80677 1.19221 1.20764 1.20756 0.92331 0.92861 0.91819 0.90503 0.89894 0.90456 0.90979 0.76450 0.83278 0.81128 0.80671 0.82977 0.93806 0.89546 0.77469 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.15 0.35 -1.06 16 2 C 0.09 0.95 2.65 -67.71 -0.18 0.77 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 4 C -0.13 -1.10 4.92 -26.73 -0.13 -1.23 16 5 C 0.11 1.13 5.50 -4.04 -0.02 1.10 16 6 N -0.72 -6.08 5.51 -61.20 -0.34 -6.42 16 7 C 0.55 6.36 7.79 -12.26 -0.10 6.27 16 8 O -0.51 -8.28 15.48 5.34 0.08 -8.20 16 9 C -0.13 -1.12 5.91 -104.60 -0.62 -1.74 16 10 C -0.11 -0.58 9.61 -39.03 -0.38 -0.96 16 11 C 0.08 0.43 11.17 -17.61 -0.20 0.23 16 12 N -0.44 -3.28 10.33 -13.24 -0.14 -3.42 16 13 C 0.07 0.54 11.17 -17.49 -0.20 0.35 16 14 C 0.11 1.04 7.33 -38.79 -0.28 0.76 16 15 F -0.10 -1.27 15.72 2.25 0.04 -1.23 16 16 N -0.67 -10.41 5.93 -107.99 -0.64 -11.05 16 17 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 18 C 0.44 10.57 7.82 -10.99 -0.09 10.49 16 19 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 20 N -0.56 -14.54 5.29 -10.97 -0.06 -14.60 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.99 6.43 -51.93 -0.33 0.66 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 1.91 6.61 -40.82 -0.27 1.64 16 37 H 0.15 0.26 6.54 -52.49 -0.34 -0.09 16 38 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 39 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.35 5.77 6.17 -39.29 -0.24 5.53 16 41 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.09 1.41 7.44 -51.93 -0.39 1.02 16 43 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -36.36 379.09 -7.24 -43.60 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.58 Total: 11.67 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.11 Total: 7.70 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.45 Total: -59.63 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.21 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.36 -7.24 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713405659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.302 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds