Wall clock time and date at job start Tue Mar 31 2020 20:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47417 * 2 1 4 4 C 1.53001 * 109.47264 * 240.00075 * 2 1 3 5 5 C 1.52999 * 109.47090 * 175.00297 * 4 2 1 6 6 N 1.46500 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00201 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.47995 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.39903 * 120.94601 * 0.23534 * 9 7 6 11 11 C 1.38041 * 119.03426 * 180.27832 * 10 9 7 12 12 N 1.31859 * 120.98258 * 359.72512 * 11 10 9 13 13 C 1.31716 * 122.09710 * 0.02562 * 12 11 10 14 14 C 1.38538 * 120.84601 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.53935 * 179.97438 * 14 13 12 16 16 N 1.46907 * 109.47110 * 119.99837 * 2 1 3 17 17 C 1.46895 * 111.00083 * 274.99967 * 16 2 1 18 18 C 1.50696 * 109.47072 * 179.97438 * 17 16 2 19 19 O 1.21293 * 120.00257 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99926 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00255 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99721 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00565 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00274 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47131 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47100 * 119.99975 * 25 23 21 28 28 H 1.48500 * 109.47228 * 239.99832 * 25 23 21 29 29 H 1.09003 * 109.47283 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.47302 * 59.99994 * 1 2 3 31 31 H 1.09005 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47038 * 54.99922 * 4 2 1 33 33 H 1.09005 * 109.46976 * 295.00152 * 4 2 1 34 34 H 1.08994 * 109.47487 * 59.99900 * 5 4 2 35 35 H 1.08999 * 109.46833 * 299.99422 * 5 4 2 36 36 H 0.97008 * 119.99993 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.48201 * 0.02562 * 10 9 7 38 38 H 1.08005 * 119.50718 * 179.75268 * 11 10 9 39 39 H 1.07998 * 119.58275 * 180.02562 * 13 12 11 40 40 H 1.00903 * 110.99684 * 151.04678 * 16 2 1 41 41 H 1.09003 * 109.47029 * 299.99989 * 17 16 2 42 42 H 1.08997 * 109.46860 * 60.00005 * 17 16 2 43 43 H 0.97001 * 120.00471 * 0.02562 * 20 18 17 44 44 H 0.96995 * 120.00218 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3044 -2.5094 7 6 5.3742 -1.3408 -2.7745 8 8 6.1601 -0.7999 -2.0218 9 6 5.8674 -2.0385 -3.9829 10 6 4.9798 -2.6626 -4.8660 11 6 5.4833 -3.3071 -5.9780 12 7 6.7798 -3.3355 -6.2171 13 6 7.6519 -2.7579 -5.4167 14 6 7.2358 -2.0893 -4.2769 15 9 8.1358 -1.4994 -3.4600 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5873 -0.5218 3.5560 19 8 2.8677 -1.6988 3.4703 20 7 2.7282 0.1205 4.7324 21 6 3.1880 -0.5566 5.8324 22 1 3.4369 -1.6048 5.7562 23 6 3.3328 0.1054 7.0454 24 7 3.0295 1.3807 7.1383 25 14 3.9586 -0.8173 8.5442 26 1 4.2273 -2.2312 8.1784 27 1 5.2123 -0.1846 9.0272 28 1 2.9343 -0.7694 9.6183 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.9994 -1.0728 -0.4259 35 1 3.8531 0.4370 -1.3573 36 1 3.4259 -1.7365 -3.1101 37 1 3.9164 -2.6441 -4.6782 38 1 4.8053 -3.7949 -6.6627 39 1 8.7048 -2.8059 -5.6520 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1182 42 1 1.0870 0.6163 2.5525 43 1 2.5043 1.0618 4.8010 44 1 3.1309 1.8429 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713405659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:20 Heat of formation + Delta-G solvation = -109.532564 kcal Electronic energy + Delta-G solvation = -27847.081755 eV Core-core repulsion = 23519.680638 eV Total energy + Delta-G solvation = -4327.401117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.11436 -41.61943 -40.40770 -40.16632 -38.42444 -36.17530 -35.83992 -34.03621 -33.32733 -32.48628 -31.99157 -29.95947 -28.09648 -26.42813 -25.74930 -24.73163 -23.81267 -22.20583 -21.31619 -21.11745 -19.95179 -19.46899 -18.50795 -18.40592 -17.85750 -17.27053 -17.15622 -16.84833 -16.76638 -16.51828 -16.30669 -16.07676 -15.61917 -15.43636 -15.27333 -15.02442 -14.73206 -14.62130 -14.43652 -14.28171 -14.08383 -13.53722 -13.36521 -13.21861 -13.16723 -12.89117 -12.59790 -12.44101 -12.29152 -12.21871 -12.12618 -11.83304 -11.54375 -11.52617 -11.16633 -10.73081 -10.38171 -10.30787 -10.12680 -10.04078 -9.33917 -8.49214 -5.98082 -0.64749 -0.21799 1.34508 1.39550 1.54089 1.61121 1.78357 2.02282 2.27235 2.55439 2.80930 2.91867 3.17746 3.27549 3.38153 3.49469 3.53226 3.63542 3.76375 3.94776 4.07685 4.26287 4.28573 4.41974 4.46887 4.48629 4.52841 4.59937 4.60847 4.68282 4.72466 4.96163 4.98516 5.03603 5.16879 5.22045 5.38625 5.41540 5.48879 5.89692 6.11729 6.27562 6.39578 6.57371 6.63740 6.95342 7.10033 7.53326 8.08695 8.68460 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.002005 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.330762 B =13959.660576 C =15383.501519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.696 5.696 7 C 0.547 3.453 8 O -0.570 6.570 9 C -0.142 4.142 10 C -0.093 4.093 11 C 0.093 3.907 12 N -0.457 5.457 13 C 0.074 3.926 14 C 0.073 3.927 15 F -0.130 7.130 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.421 0.579 37 H 0.191 0.809 38 H 0.213 0.787 39 H 0.191 0.809 40 H 0.340 0.660 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -3.661 -30.775 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.155 4.155 5 C -0.010 4.010 6 N -0.349 5.349 7 C 0.334 3.666 8 O -0.449 6.449 9 C -0.153 4.153 10 C -0.113 4.113 11 C -0.063 4.063 12 N -0.165 5.165 13 C -0.084 4.084 14 C 0.050 3.950 15 F -0.108 7.108 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.193 1.193 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.261 0.739 37 H 0.208 0.792 38 H 0.229 0.771 39 H 0.208 0.792 40 H 0.160 0.840 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.165 -4.563 -30.658 31.071 hybrid contribution 0.980 1.194 1.894 2.444 sum -1.184 -3.369 -28.764 28.984 Atomic orbital electron populations 1.21776 0.92986 1.02441 1.02138 1.21655 0.97085 0.96110 0.87982 0.93010 1.21910 0.91401 1.03371 0.98791 1.21458 0.95929 0.96929 0.86659 1.45596 1.06217 1.56056 1.27043 1.18389 0.83262 0.79979 0.84960 1.90875 1.56657 1.46992 1.50417 1.20631 0.93522 1.03392 0.97801 1.22765 1.02221 0.93685 0.92627 1.23586 0.91478 0.95366 0.95906 1.67700 1.04624 1.15327 1.28860 1.23236 1.02322 0.94071 0.88746 1.19341 0.86601 0.97204 0.91832 1.91574 1.66343 1.81375 1.71518 1.60267 1.34529 1.32638 1.04038 1.21579 1.02173 0.93711 0.89341 1.20942 0.83205 0.88024 0.85500 1.90486 1.56680 1.18281 1.85623 1.41947 1.58265 1.12571 1.08291 1.19695 1.42134 0.95916 0.88598 0.90446 1.26065 0.97233 0.96680 1.01423 1.69676 1.48607 1.09654 1.28132 0.84861 0.78204 0.77972 0.77225 1.19890 1.19618 1.19338 0.93668 0.89705 0.92415 0.86691 0.89421 0.93810 0.91805 0.73916 0.79207 0.77084 0.79174 0.83952 0.92093 0.87642 0.76971 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.41 71.98 0.68 -1.69 16 2 C 0.08 1.62 2.65 44.91 0.12 1.74 16 3 H 0.05 1.00 7.80 -2.38 -0.02 0.98 16 4 C -0.12 -1.60 4.92 30.59 0.15 -1.45 16 5 C 0.11 2.22 5.50 86.38 0.48 2.70 16 6 N -0.70 -10.81 5.51 -465.84 -2.57 -13.38 16 7 C 0.55 12.80 7.79 86.83 0.68 13.48 16 8 O -0.57 -19.92 15.48 -3.81 -0.06 -19.98 16 9 C -0.14 -2.47 5.91 -19.85 -0.12 -2.58 16 10 C -0.09 -0.66 9.61 22.63 0.22 -0.44 16 11 C 0.09 0.62 11.17 84.64 0.95 1.57 16 12 N -0.46 -5.85 10.33 -195.82 -2.02 -7.88 16 13 C 0.07 1.09 11.17 84.78 0.95 2.04 16 14 C 0.07 1.48 7.33 22.78 0.17 1.64 16 15 F -0.13 -3.54 15.72 44.97 0.71 -2.83 16 16 N -0.68 -20.96 5.93 -495.58 -2.94 -23.90 16 17 C 0.06 2.26 5.96 85.56 0.51 2.77 16 18 C 0.44 21.47 7.82 87.66 0.69 22.15 16 19 O -0.62 -35.77 15.78 -3.07 -0.05 -35.82 16 20 N -0.57 -30.41 5.29 -306.99 -1.62 -32.03 16 21 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 25 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 29 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.04 1.17 6.43 -2.39 -0.02 1.16 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 2.56 6.61 -92.70 -0.61 1.94 16 37 H 0.19 -0.35 6.54 -2.91 -0.02 -0.37 16 38 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.34 11.50 6.17 -89.69 -0.55 10.95 16 41 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 42 H 0.11 3.32 7.44 -2.39 -0.02 3.30 16 43 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 44 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -84.82 379.09 -0.33 -85.15 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.82 Total: 32.04 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 6.73 Total: 22.88 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -8.87 Total: -127.56 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.11 Total: -55.79 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.71 Total: -2.83 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -84.82 -0.33 -85.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713405659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.382 kcal (2) G-P(sol) polarization free energy of solvation -84.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds