Wall clock time and date at job start Tue Mar 31 2020 20:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 C 1.53004 * 109.47048 * 120.00281 * 2 1 3 5 5 C 1.52995 * 109.47161 * 185.00175 * 4 2 1 6 6 N 1.46499 * 109.47437 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00539 * 179.97438 * 6 5 4 8 8 O 1.21537 * 119.99782 * 359.97438 * 7 6 5 9 9 C 1.47996 * 120.00558 * 179.97438 * 7 6 5 10 10 N 1.32818 * 119.74647 * 0.24396 * 9 7 6 11 11 C 1.31430 * 121.66236 * 180.28739 * 10 9 7 12 12 C 1.38684 * 120.98168 * 359.72922 * 11 10 9 13 13 C 1.38449 * 119.39251 * 0.02562 * 12 11 10 14 14 C 1.38958 * 118.47154 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.50647 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.46909 * 240.00024 * 2 1 3 17 17 C 1.46896 * 111.00172 * 85.00193 * 16 2 1 18 18 C 1.50698 * 109.47261 * 179.97438 * 17 16 2 19 19 O 1.21293 * 119.99968 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99996 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99806 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00076 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99923 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99954 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47167 * 60.00054 * 25 23 21 27 27 H 1.48499 * 109.47014 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47250 * 299.99779 * 25 23 21 29 29 H 1.09007 * 109.47697 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47204 * 300.00294 * 1 2 3 31 31 H 1.09004 * 109.47207 * 59.99992 * 1 2 3 32 32 H 1.08997 * 109.47355 * 64.99838 * 4 2 1 33 33 H 1.09001 * 109.46735 * 304.99974 * 4 2 1 34 34 H 1.09003 * 109.47514 * 59.99234 * 5 4 2 35 35 H 1.09001 * 109.47131 * 299.99556 * 5 4 2 36 36 H 0.97006 * 119.99442 * 359.97438 * 6 5 4 37 37 H 1.08003 * 119.51239 * 179.75069 * 11 10 9 38 38 H 1.07999 * 120.30101 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.76338 * 180.02562 * 13 12 11 40 40 H 1.00900 * 110.99524 * 208.95739 * 16 2 1 41 41 H 1.09000 * 109.47073 * 299.99931 * 17 16 2 42 42 H 1.09004 * 109.46857 * 59.99677 * 17 16 2 43 43 H 0.96993 * 119.99909 * 359.97438 * 20 18 17 44 44 H 0.96995 * 119.99899 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.6134 1.3137 6 7 4.0532 -1.3045 2.5095 7 6 5.3741 -1.3409 2.7747 8 8 6.1601 -0.8006 2.0215 9 6 5.8674 -2.0386 3.9830 10 7 5.0044 -2.6315 4.8002 11 6 5.4006 -3.2568 5.8862 12 6 6.7450 -3.3265 6.2196 13 6 7.6816 -2.7272 5.3948 14 6 7.2361 -2.0716 4.2534 15 9 8.1144 -1.4722 3.4199 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2225 -2.3469 18 6 2.5884 -0.5216 -3.5557 19 8 2.8687 -1.6986 -3.4699 20 7 2.7286 0.1205 -4.7324 21 6 3.1884 -0.5566 -5.8322 22 1 3.4379 -1.6046 -5.7558 23 6 3.3334 0.1055 -7.0452 24 7 3.0303 1.3808 -7.1380 25 14 3.9593 -0.8172 -8.5440 26 1 3.0372 -1.9388 -8.8554 27 1 4.0224 0.1077 -9.7040 28 1 5.3151 -1.3542 -8.2641 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2056 33 1 1.6053 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4260 36 1 3.4258 -1.7361 3.1105 37 1 4.6684 -3.7236 6.5284 38 1 7.0582 -3.8428 7.1150 39 1 8.7342 -2.7682 5.6330 40 1 2.9172 -1.1205 -1.0287 41 1 1.0870 0.6163 -2.5525 42 1 2.7588 1.0461 -2.1182 43 1 2.5034 1.0614 -4.8012 44 1 3.1311 1.8429 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713419643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:56 Heat of formation + Delta-G solvation = -80.819161 kcal Electronic energy + Delta-G solvation = -27860.668237 eV Core-core repulsion = 23534.512227 eV Total energy + Delta-G solvation = -4326.156010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.32035 -40.89594 -39.38253 -38.41600 -37.13310 -34.88759 -33.85251 -33.23980 -31.78190 -31.37795 -30.99600 -29.00553 -26.40204 -25.51384 -24.22100 -23.89569 -22.98562 -21.21797 -20.34179 -19.22648 -18.55071 -18.06656 -17.83195 -17.61050 -16.47003 -16.39151 -15.96666 -15.90062 -15.66099 -15.21452 -14.91712 -14.58312 -14.44197 -14.11361 -14.03788 -13.78980 -13.70459 -13.59101 -13.38370 -13.07609 -12.93942 -12.46220 -12.13002 -11.82422 -11.66314 -11.53710 -11.27781 -11.21793 -11.00750 -10.80179 -10.66232 -10.57389 -10.39867 -10.16095 -10.06087 -9.59562 -9.44671 -9.24037 -8.38721 -8.01934 -7.90276 -6.36324 -3.76877 -0.03478 0.42396 2.33197 2.68897 3.24007 3.24573 3.29528 3.34412 3.47452 3.61385 3.96962 4.04927 4.13955 4.19352 4.22742 4.36890 4.63612 4.70716 4.88962 4.97473 5.04067 5.16589 5.18265 5.27659 5.30416 5.42251 5.44190 5.57479 5.74150 5.84617 5.87232 5.91001 5.93908 6.04950 6.10348 6.18266 6.30167 6.40187 6.95427 7.27353 7.29886 7.60282 7.71468 7.90600 8.11803 8.67184 9.23335 9.60155 10.11954 10.81444 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002018 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.275509 B =13872.578689 C =15293.020059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.111 3.889 6 N -0.705 5.705 7 C 0.564 3.436 8 O -0.515 6.515 9 C 0.048 3.952 10 N -0.432 5.432 11 C 0.087 3.913 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.112 3.888 15 F -0.103 7.103 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.411 0.589 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.349 0.651 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -4.492 30.872 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.012 4.012 6 N -0.357 5.357 7 C 0.348 3.652 8 O -0.390 6.390 9 C -0.092 4.092 10 N -0.143 5.143 11 C -0.074 4.074 12 C -0.140 4.140 13 C -0.145 4.145 14 C 0.089 3.911 15 F -0.081 7.081 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.190 0.810 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.580 -4.914 29.726 30.171 hybrid contribution 1.719 0.571 -0.220 1.825 sum 3.299 -4.342 29.506 30.006 Atomic orbital electron populations 1.21783 0.94222 1.02528 1.01136 1.21457 0.96288 0.95806 0.88898 0.93689 1.21981 0.93388 1.03020 0.98623 1.21577 0.94576 0.97581 0.87505 1.45728 1.06916 1.56033 1.26989 1.17664 0.83160 0.80401 0.83998 1.90910 1.55349 1.44843 1.47864 1.21416 0.89177 1.01158 0.97405 1.67630 1.37341 1.05957 1.03370 1.22933 0.94997 0.96042 0.93378 1.22344 0.93663 0.97818 1.00132 1.21772 1.02478 0.97265 0.92993 1.18690 0.87365 0.95061 0.89955 1.91658 1.66982 1.80037 1.69383 1.60207 1.34955 1.32156 1.02810 1.21724 1.01265 0.93953 0.91341 1.19826 0.84869 0.88207 0.84452 1.90521 1.55279 1.16159 1.84760 1.41851 1.57813 1.12445 1.07970 1.19654 1.39933 0.96409 0.86823 0.88001 1.25260 0.97719 0.95791 0.99235 1.69605 1.48749 1.08827 1.27211 0.85914 0.79431 0.78811 0.80036 1.19915 1.21012 1.19925 0.91828 0.92874 0.92394 0.89885 0.90491 0.91101 0.90582 0.75334 0.81049 0.83016 0.82630 0.82941 0.89568 0.93828 0.77468 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.41 37.16 0.35 -1.19 16 2 C 0.09 1.04 2.65 -67.71 -0.18 0.86 16 3 H 0.05 0.53 7.80 -51.93 -0.40 0.13 16 4 C -0.13 -1.30 4.92 -26.73 -0.13 -1.43 16 5 C 0.11 1.29 5.50 -4.05 -0.02 1.27 16 6 N -0.70 -7.75 5.54 -61.20 -0.34 -8.09 16 7 C 0.56 7.56 7.81 -12.26 -0.10 7.46 16 8 O -0.52 -8.89 15.32 5.33 0.08 -8.81 16 9 C 0.05 0.52 6.75 -82.95 -0.56 -0.04 16 10 N -0.43 -3.64 9.54 -9.76 -0.09 -3.73 16 11 C 0.09 0.44 11.18 -17.56 -0.20 0.24 16 12 C -0.12 -0.46 10.11 -39.34 -0.40 -0.85 16 13 C -0.12 -0.70 10.16 -39.24 -0.40 -1.10 16 14 C 0.11 1.13 7.32 -38.82 -0.28 0.85 16 15 F -0.10 -1.31 15.55 2.25 0.04 -1.28 16 16 N -0.67 -10.97 5.93 -107.99 -0.64 -11.62 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.81 7.82 -10.99 -0.09 10.72 16 19 O -0.58 -16.39 15.78 5.55 0.09 -16.30 16 20 N -0.56 -14.78 5.29 -10.96 -0.06 -14.83 16 21 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 22 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 25 Si 0.93 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 36 H 0.41 3.59 7.80 -40.82 -0.32 3.27 16 37 H 0.17 0.29 8.06 -52.48 -0.42 -0.14 16 38 H 0.15 0.05 8.06 -52.49 -0.42 -0.38 16 39 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.35 6.09 6.17 -39.29 -0.24 5.85 16 41 H 0.09 1.45 7.44 -51.93 -0.39 1.07 16 42 H 0.04 0.73 8.06 -51.93 -0.42 0.32 16 43 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -36.06 381.03 -7.46 -43.52 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.71 Total: 13.73 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -2.27 Total: 9.44 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.41 Total: -62.67 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.17 Total: -25.11 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.06 -7.46 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713419643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.294 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds