Wall clock time and date at job start Tue Mar 31 2020 20:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 C 1.53004 * 109.47048 * 120.00281 * 2 1 3 5 5 C 1.52995 * 109.47161 * 185.00175 * 4 2 1 6 6 N 1.46499 * 109.47437 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00539 * 179.97438 * 6 5 4 8 8 O 1.21537 * 119.99782 * 359.97438 * 7 6 5 9 9 C 1.47996 * 120.00558 * 179.97438 * 7 6 5 10 10 N 1.32818 * 119.74647 * 0.24396 * 9 7 6 11 11 C 1.31430 * 121.66236 * 180.28739 * 10 9 7 12 12 C 1.38684 * 120.98168 * 359.72922 * 11 10 9 13 13 C 1.38449 * 119.39251 * 0.02562 * 12 11 10 14 14 C 1.38958 * 118.47154 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.50647 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.46909 * 240.00024 * 2 1 3 17 17 C 1.46896 * 111.00172 * 85.00193 * 16 2 1 18 18 C 1.50698 * 109.47261 * 179.97438 * 17 16 2 19 19 O 1.21293 * 119.99968 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99996 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99806 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00076 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99923 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99954 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47167 * 60.00054 * 25 23 21 27 27 H 1.48499 * 109.47014 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47250 * 299.99779 * 25 23 21 29 29 H 1.09007 * 109.47697 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47204 * 300.00294 * 1 2 3 31 31 H 1.09004 * 109.47207 * 59.99992 * 1 2 3 32 32 H 1.08997 * 109.47355 * 64.99838 * 4 2 1 33 33 H 1.09001 * 109.46735 * 304.99974 * 4 2 1 34 34 H 1.09003 * 109.47514 * 59.99234 * 5 4 2 35 35 H 1.09001 * 109.47131 * 299.99556 * 5 4 2 36 36 H 0.97006 * 119.99442 * 359.97438 * 6 5 4 37 37 H 1.08003 * 119.51239 * 179.75069 * 11 10 9 38 38 H 1.07999 * 120.30101 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.76338 * 180.02562 * 13 12 11 40 40 H 1.00900 * 110.99524 * 208.95739 * 16 2 1 41 41 H 1.09000 * 109.47073 * 299.99931 * 17 16 2 42 42 H 1.09004 * 109.46857 * 59.99677 * 17 16 2 43 43 H 0.96993 * 119.99909 * 359.97438 * 20 18 17 44 44 H 0.96995 * 119.99899 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.6134 1.3137 6 7 4.0532 -1.3045 2.5095 7 6 5.3741 -1.3409 2.7747 8 8 6.1601 -0.8006 2.0215 9 6 5.8674 -2.0386 3.9830 10 7 5.0044 -2.6315 4.8002 11 6 5.4006 -3.2568 5.8862 12 6 6.7450 -3.3265 6.2196 13 6 7.6816 -2.7272 5.3948 14 6 7.2361 -2.0716 4.2534 15 9 8.1144 -1.4722 3.4199 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2225 -2.3469 18 6 2.5884 -0.5216 -3.5557 19 8 2.8687 -1.6986 -3.4699 20 7 2.7286 0.1205 -4.7324 21 6 3.1884 -0.5566 -5.8322 22 1 3.4379 -1.6046 -5.7558 23 6 3.3334 0.1055 -7.0452 24 7 3.0303 1.3808 -7.1380 25 14 3.9593 -0.8172 -8.5440 26 1 3.0372 -1.9388 -8.8554 27 1 4.0224 0.1077 -9.7040 28 1 5.3151 -1.3542 -8.2641 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2056 33 1 1.6053 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4260 36 1 3.4258 -1.7361 3.1105 37 1 4.6684 -3.7236 6.5284 38 1 7.0582 -3.8428 7.1150 39 1 8.7342 -2.7682 5.6330 40 1 2.9172 -1.1205 -1.0287 41 1 1.0870 0.6163 -2.5525 42 1 2.7588 1.0461 -2.1182 43 1 2.5034 1.0614 -4.8012 44 1 3.1311 1.8429 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713419643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:55 Heat of formation + Delta-G solvation = -110.268764 kcal Electronic energy + Delta-G solvation = -27861.945268 eV Core-core repulsion = 23534.512227 eV Total energy + Delta-G solvation = -4327.433041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11136 -41.58640 -40.35006 -40.09504 -38.41809 -36.13118 -35.78909 -33.81216 -33.32902 -32.64156 -32.10321 -29.90842 -28.09051 -26.33092 -25.71209 -24.66780 -23.84660 -22.14257 -21.32773 -21.11573 -19.94503 -19.33274 -18.73827 -18.23985 -17.86634 -17.30823 -17.17580 -16.83657 -16.66929 -16.50460 -16.33551 -16.07369 -15.63159 -15.32816 -15.14537 -14.92190 -14.77710 -14.42052 -14.21343 -14.16972 -14.07442 -13.52456 -13.51692 -13.36236 -13.17784 -12.88172 -12.60526 -12.45887 -12.30473 -12.22714 -12.12455 -11.82313 -11.52697 -11.51089 -11.05086 -10.76968 -10.40375 -10.35115 -10.06792 -10.03854 -9.34089 -8.48231 -5.97284 -0.64292 -0.05690 1.38260 1.39542 1.51071 1.53527 1.85322 2.02842 2.27844 2.60074 2.85672 2.91666 3.01330 3.18502 3.49217 3.57759 3.60409 3.75670 3.86357 3.94376 4.06956 4.28707 4.33234 4.42261 4.46831 4.49947 4.53836 4.59451 4.65493 4.79108 4.90376 4.94333 4.99076 5.02196 5.17306 5.25127 5.38604 5.46717 5.47577 5.89844 6.11910 6.24099 6.38165 6.58106 6.58422 6.99113 7.10310 7.53654 8.09287 8.68993 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002018 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.275509 B =13872.578689 C =15293.020059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.054 0.946 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.691 5.691 7 C 0.555 3.445 8 O -0.570 6.570 9 C 0.018 3.982 10 N -0.445 5.445 11 C 0.090 3.910 12 C -0.092 4.092 13 C -0.115 4.115 14 C 0.079 3.921 15 F -0.131 7.131 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.435 3.565 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.423 0.577 37 H 0.213 0.787 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.340 0.660 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -5.173 33.846 34.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.154 4.154 5 C -0.010 4.010 6 N -0.343 5.343 7 C 0.341 3.659 8 O -0.449 6.449 9 C -0.119 4.119 10 N -0.157 5.157 11 C -0.071 4.071 12 C -0.112 4.112 13 C -0.141 4.141 14 C 0.056 3.944 15 F -0.109 7.109 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.230 0.770 38 H 0.218 0.782 39 H 0.199 0.801 40 H 0.160 0.840 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.230 0.770 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.685 -5.569 32.726 33.204 hybrid contribution 1.950 0.702 -0.951 2.280 sum 2.635 -4.868 31.776 32.254 Atomic orbital electron populations 1.21774 0.92920 1.02412 1.02188 1.21636 0.97124 0.96078 0.87797 0.92820 1.21890 0.91587 1.03135 0.98831 1.21479 0.95906 0.96937 0.86682 1.45632 1.06615 1.55371 1.26678 1.18239 0.83294 0.79869 0.84544 1.90860 1.56632 1.47383 1.49979 1.21033 0.89898 1.03353 0.97625 1.67611 1.37073 1.06618 1.04354 1.23769 0.96793 0.94326 0.92222 1.22917 0.92522 0.95368 1.00372 1.22166 1.04424 0.96086 0.91410 1.19186 0.87025 0.96762 0.91431 1.91577 1.67713 1.80971 1.70647 1.60266 1.34527 1.32657 1.04048 1.21586 1.02222 0.93701 0.89296 1.20927 0.83255 0.88019 0.85499 1.90485 1.56712 1.18283 1.85620 1.41925 1.58232 1.12593 1.08227 1.19633 1.42346 0.95954 0.88635 0.90443 1.26075 0.97188 0.96687 1.01426 1.69666 1.48469 1.09646 1.28228 0.84971 0.78647 0.77868 0.76731 1.19578 1.19252 1.19868 0.92520 0.89811 0.93364 0.89879 0.87165 0.91653 0.93673 0.73878 0.77048 0.78158 0.80122 0.83996 0.87558 0.92048 0.76956 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.41 71.98 0.68 -2.02 16 2 C 0.08 1.91 2.65 44.92 0.12 2.03 16 3 H 0.05 1.17 7.80 -2.39 -0.02 1.15 16 4 C -0.12 -2.14 4.92 30.59 0.15 -1.99 16 5 C 0.11 2.75 5.50 86.38 0.48 3.23 16 6 N -0.69 -15.77 5.54 -465.83 -2.58 -18.35 16 7 C 0.55 16.03 7.81 86.83 0.68 16.70 16 8 O -0.57 -21.69 15.32 -3.83 -0.06 -21.75 16 9 C 0.02 0.40 6.75 41.90 0.28 0.68 16 10 N -0.45 -6.89 9.54 -184.78 -1.76 -8.65 16 11 C 0.09 0.58 11.18 84.86 0.95 1.52 16 12 C -0.09 -0.30 10.11 22.43 0.23 -0.08 16 13 C -0.11 -1.12 10.16 22.49 0.23 -0.90 16 14 C 0.08 1.65 7.32 22.76 0.17 1.82 16 15 F -0.13 -3.68 15.55 44.97 0.70 -2.98 16 16 N -0.68 -22.60 5.93 -495.58 -2.94 -25.54 16 17 C 0.06 2.36 5.96 85.56 0.51 2.87 16 18 C 0.44 22.03 7.82 87.66 0.69 22.72 16 19 O -0.62 -36.65 15.78 -3.07 -0.05 -36.70 16 20 N -0.57 -30.93 5.29 -306.98 -1.62 -32.55 16 21 C -0.34 -19.95 9.68 84.04 0.81 -19.13 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -51.20 13.05 21.66 0.28 -50.92 16 25 Si 0.99 44.56 29.55 68.60 2.03 46.59 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.06 1.21 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.06 7.45 -2.38 -0.02 1.04 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.38 6.43 -2.39 -0.02 1.37 16 36 H 0.42 7.24 7.80 -92.70 -0.72 6.52 16 37 H 0.21 -0.43 8.06 -2.91 -0.02 -0.46 16 38 H 0.20 -1.23 8.06 -2.91 -0.02 -1.25 16 39 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.34 12.39 6.17 -89.69 -0.55 11.84 16 41 H 0.11 3.49 7.44 -2.39 -0.02 3.47 16 42 H 0.06 2.05 8.06 -2.39 -0.02 2.03 16 43 H 0.40 20.28 7.90 -92.71 -0.73 19.54 16 44 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -84.97 381.03 -0.51 -85.48 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.94 Total: 38.22 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: 6.43 Total: 27.15 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -8.63 Total: -136.01 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.11 Total: -58.45 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.70 Total: -2.98 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -84.97 -0.51 -85.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713419643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.790 kcal (2) G-P(sol) polarization free energy of solvation -84.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds