Wall clock time and date at job start Tue Mar 31 2020 20:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47009 * 2 1 4 4 C 1.52994 * 109.47213 * 239.99623 * 2 1 3 5 5 C 1.52999 * 109.47187 * 175.00257 * 4 2 1 6 6 N 1.46495 * 109.47335 * 179.97438 * 5 4 2 7 7 C 1.34779 * 120.00193 * 180.02562 * 6 5 4 8 8 O 1.21543 * 119.99981 * 359.97438 * 7 6 5 9 9 C 1.47996 * 120.00099 * 179.97438 * 7 6 5 10 10 N 1.32808 * 119.75131 * 359.97412 * 9 7 6 11 11 C 1.31432 * 121.66655 * 180.02562 * 10 9 7 12 12 C 1.38685 * 120.98036 * 0.02562 * 11 10 9 13 13 C 1.38452 * 119.39631 * 359.97438 * 12 11 10 14 14 C 1.38964 * 118.46403 * 0.02562 * 13 12 11 15 15 F 1.35099 * 120.49983 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.46859 * 119.99140 * 2 1 3 17 17 C 1.46898 * 111.00502 * 275.00239 * 16 2 1 18 18 C 1.50699 * 109.47353 * 180.02562 * 17 16 2 19 19 O 1.21291 * 119.99911 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00106 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00316 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99415 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00259 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00286 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47319 * 89.99626 * 25 23 21 27 27 H 1.48506 * 109.47013 * 209.99530 * 25 23 21 28 28 H 1.48496 * 109.47266 * 329.99478 * 25 23 21 29 29 H 1.09003 * 109.47330 * 300.00600 * 1 2 3 30 30 H 1.09002 * 109.47020 * 60.00354 * 1 2 3 31 31 H 1.09000 * 109.47470 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47334 * 55.00201 * 4 2 1 33 33 H 1.09000 * 109.46911 * 294.99521 * 4 2 1 34 34 H 1.09005 * 109.47566 * 59.99412 * 5 4 2 35 35 H 1.09008 * 109.47135 * 299.99811 * 5 4 2 36 36 H 0.97003 * 120.00306 * 359.97438 * 6 5 4 37 37 H 1.07997 * 119.51170 * 180.27976 * 11 10 9 38 38 H 1.08003 * 120.29796 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.76366 * 180.02562 * 13 12 11 40 40 H 1.00907 * 110.99860 * 151.04621 * 16 2 1 41 41 H 1.09001 * 109.46866 * 300.00399 * 17 16 2 42 42 H 1.08996 * 109.47270 * 59.99689 * 17 16 2 43 43 H 0.96996 * 119.99858 * 0.02562 * 20 18 17 44 44 H 0.96991 * 120.00274 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0532 -1.3046 -2.5093 7 6 5.3742 -1.3409 -2.7743 8 8 6.1602 -0.7999 -2.0215 9 6 5.8676 -2.0397 -3.9820 10 7 5.0045 -2.6297 -4.8010 11 6 5.4012 -3.2609 -5.8834 12 6 6.7461 -3.3359 -6.2135 13 6 7.6827 -2.7355 -5.3893 14 6 7.2366 -2.0746 -4.2512 15 9 8.1147 -1.4740 -3.4185 16 7 2.0196 -0.6923 1.1995 17 6 2.0823 0.2228 2.3469 18 6 2.5883 -0.5212 3.5558 19 8 2.8695 -1.6979 3.4699 20 7 2.7294 0.1213 4.7322 21 6 3.1892 -0.5557 5.8322 22 1 3.4388 -1.6037 5.7558 23 6 3.3341 0.1065 7.0451 24 7 3.7754 -0.5422 8.0993 25 14 2.9018 1.9190 7.1771 26 1 1.4724 2.0607 7.5540 27 1 3.7526 2.5566 8.2139 28 1 3.1366 2.5805 5.8686 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2053 34 1 3.9995 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.4260 -1.7367 -3.1099 37 1 4.6688 -3.7247 -6.5274 38 1 7.0599 -3.8571 -7.1059 39 1 8.7356 -2.7799 -5.6255 40 1 2.9173 -1.1204 1.0289 41 1 2.7587 1.0464 2.1182 42 1 1.0870 0.6166 2.5525 43 1 2.5049 1.0624 4.8008 44 1 3.8769 -0.0799 8.9458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713419644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:58 Heat of formation + Delta-G solvation = -105.589727 kcal Electronic energy + Delta-G solvation = -27915.717629 eV Core-core repulsion = 23588.487486 eV Total energy + Delta-G solvation = -4327.230143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11449 -41.58644 -40.44304 -40.14069 -38.44122 -36.15457 -35.81583 -33.84933 -33.74559 -32.69911 -32.11809 -29.90501 -28.22627 -26.30124 -25.55301 -24.66012 -23.83220 -22.13916 -21.36853 -21.26458 -20.31414 -19.32778 -18.74018 -18.24155 -17.84506 -17.32842 -17.20988 -16.85408 -16.75070 -16.57965 -16.37763 -15.98880 -15.58220 -15.23207 -15.04072 -14.91897 -14.77468 -14.47915 -14.40396 -14.20979 -14.17734 -13.94586 -13.52384 -13.41707 -13.18659 -12.91519 -12.59419 -12.43800 -12.30585 -12.21942 -11.98795 -11.81556 -11.53438 -11.51030 -11.05309 -10.77208 -10.46455 -10.38069 -10.26947 -10.06744 -9.33860 -8.43133 -6.04241 -0.64455 -0.06016 1.28688 1.34152 1.43081 1.53389 1.85677 1.93111 2.21510 2.59885 2.71699 2.85663 3.01176 3.12671 3.38808 3.57549 3.60162 3.75606 3.86109 3.94243 4.07451 4.14350 4.32990 4.39690 4.44616 4.50103 4.53350 4.57741 4.66087 4.78901 4.90184 4.95396 5.00272 5.02521 5.18126 5.25714 5.46451 5.48868 5.52008 5.89650 6.08091 6.23955 6.36480 6.57723 6.58127 6.85750 6.99030 7.37218 7.94055 8.74668 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002044 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.170195 B =13695.653229 C =14865.070726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.059 0.941 4 C -0.118 4.118 5 C 0.113 3.887 6 N -0.692 5.692 7 C 0.555 3.445 8 O -0.570 6.570 9 C 0.018 3.982 10 N -0.445 5.445 11 C 0.090 3.910 12 C -0.093 4.093 13 C -0.115 4.115 14 C 0.079 3.921 15 F -0.131 7.131 16 N -0.685 5.685 17 C 0.061 3.939 18 C 0.446 3.554 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.254 1.254 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.423 0.577 37 H 0.213 0.787 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.340 0.660 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.390 0.610 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 1.685 -37.504 37.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.077 0.923 4 C -0.156 4.156 5 C -0.011 4.011 6 N -0.343 5.343 7 C 0.341 3.659 8 O -0.448 6.448 9 C -0.119 4.119 10 N -0.156 5.156 11 C -0.071 4.071 12 C -0.112 4.112 13 C -0.141 4.141 14 C 0.056 3.944 15 F -0.109 7.109 16 N -0.320 5.320 17 C -0.071 4.071 18 C 0.234 3.766 19 O -0.500 6.500 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.178 1.178 27 H -0.199 1.199 28 H -0.157 1.157 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.261 0.739 37 H 0.229 0.771 38 H 0.218 0.782 39 H 0.198 0.802 40 H 0.160 0.840 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.226 0.774 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.986 1.129 -36.345 36.417 hybrid contribution 1.846 0.982 0.794 2.237 sum -0.140 2.111 -35.551 35.614 Atomic orbital electron populations 1.21781 0.92887 1.02359 1.02340 1.21631 0.97105 0.96202 0.87555 0.92318 1.21901 0.91572 1.03099 0.99009 1.21499 0.95916 0.97011 0.86628 1.45639 1.06582 1.55373 1.26743 1.18228 0.83320 0.79867 0.84515 1.90861 1.56637 1.47365 1.49972 1.21043 0.89870 1.03380 0.97630 1.67607 1.37087 1.06626 1.04319 1.23765 0.96777 0.94261 0.92311 1.22917 0.92545 0.95426 1.00321 1.22168 1.04412 0.96042 0.91487 1.19189 0.87051 0.96740 0.91449 1.91575 1.67727 1.80922 1.70676 1.60257 1.34664 1.32821 1.04231 1.21693 1.02950 0.93784 0.88719 1.21046 0.82305 0.87955 0.85261 1.90540 1.55364 1.18692 1.85397 1.42031 1.60557 1.11778 1.08868 1.19008 1.42550 0.96024 0.88343 0.92837 1.26154 0.96369 1.05195 0.93811 1.69803 1.46204 1.39659 1.01787 0.85338 0.79572 0.76272 0.80168 1.17820 1.19919 1.15661 0.92968 0.89870 0.92761 0.87170 0.90097 0.93711 0.91443 0.73903 0.77058 0.78188 0.80150 0.83983 0.90989 0.86516 0.77449 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.41 71.98 0.68 -1.71 16 2 C 0.08 1.73 2.65 44.91 0.12 1.85 16 3 H 0.06 1.08 7.80 -2.39 -0.02 1.07 16 4 C -0.12 -1.99 4.92 30.59 0.15 -1.84 16 5 C 0.11 2.59 5.50 86.38 0.48 3.06 16 6 N -0.69 -15.22 5.54 -465.81 -2.58 -17.81 16 7 C 0.56 15.69 7.81 86.83 0.68 16.37 16 8 O -0.57 -21.28 15.32 -3.85 -0.06 -21.34 16 9 C 0.02 0.39 6.75 41.90 0.28 0.67 16 10 N -0.44 -6.75 9.54 -184.79 -1.76 -8.51 16 11 C 0.09 0.56 11.18 84.86 0.95 1.51 16 12 C -0.09 -0.30 10.11 22.43 0.23 -0.07 16 13 C -0.12 -1.11 10.16 22.49 0.23 -0.89 16 14 C 0.08 1.63 7.32 22.76 0.17 1.80 16 15 F -0.13 -3.64 15.55 44.97 0.70 -2.94 16 16 N -0.68 -21.08 5.93 -495.61 -2.94 -24.03 16 17 C 0.06 1.99 5.97 85.56 0.51 2.50 16 18 C 0.45 21.36 7.82 87.66 0.69 22.05 16 19 O -0.62 -36.06 15.78 -3.06 -0.05 -36.10 16 20 N -0.59 -29.27 5.09 -306.99 -1.56 -30.83 16 21 C -0.33 -20.14 10.16 84.04 0.85 -19.29 16 22 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 24 N -0.93 -57.95 13.96 21.66 0.30 -57.65 16 25 Si 0.97 40.20 27.74 68.60 1.90 42.10 16 26 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.23 -8.26 6.52 99.48 0.65 -7.61 16 29 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.32 6.43 -2.38 -0.02 1.30 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.42 6.96 7.80 -92.71 -0.72 6.24 16 37 H 0.21 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.20 -1.23 8.06 -2.91 -0.02 -1.26 16 39 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.34 11.76 6.17 -89.69 -0.55 11.20 16 41 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 42 H 0.12 3.18 7.44 -2.39 -0.02 3.16 16 43 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 44 H 0.28 15.80 8.31 -92.72 -0.77 15.03 16 Total: -1.00 -93.18 377.91 -0.38 -93.55 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.80 Total: 38.05 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 6.47 Total: 25.51 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -8.55 Total: -138.83 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -0.11 Total: -57.44 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.70 Total: -2.94 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.90 Total: 42.10 kcal Total: -93.18 -0.38 -93.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713419644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -93.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds