Wall clock time and date at job start Tue Mar 31 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00324 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.47266 * 179.97438 * 8 6 5 10 10 C 1.38237 * 119.58856 * 124.99792 * 9 8 6 11 11 C 1.38594 * 119.18791 * 180.02562 * 10 9 8 12 12 C 1.38882 * 118.39915 * 0.02562 * 11 10 9 13 13 F 1.35102 * 120.44084 * 179.97438 * 12 11 10 14 14 C 1.38415 * 119.11522 * 359.97438 * 12 11 10 15 15 N 1.31849 * 119.59120 * 304.72932 * 9 8 6 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47257 * 59.99848 * 25 23 21 27 27 H 1.48495 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46784 * 300.00182 * 25 23 21 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 35 35 H 1.08994 * 109.47278 * 300.00141 * 8 6 5 36 36 H 1.09001 * 109.46716 * 60.00198 * 8 6 5 37 37 H 1.07994 * 120.40338 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.79665 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.64224 * 179.97438 * 14 12 11 40 40 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 44 44 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8828 3.1402 8 6 5.6749 -1.5372 2.1304 9 6 6.1773 -2.2466 3.3614 10 6 6.9711 -3.3701 3.2256 11 6 7.4281 -4.0163 4.3633 12 6 7.0670 -3.5054 5.6032 13 9 7.4891 -4.1029 6.7390 14 6 6.2690 -2.3758 5.6597 15 7 5.8587 -1.7847 4.5545 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 3.0350 -1.9399 -8.8555 27 1 4.0193 0.1074 -9.7049 28 1 5.3129 -1.3534 -8.2655 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 3.9823 -0.4629 0.4315 35 1 5.9629 -2.1007 1.2429 36 1 6.1098 -0.5388 2.0838 37 1 7.2311 -3.7403 2.2450 38 1 8.0501 -4.8959 4.2874 39 1 5.9828 -1.9715 6.6194 40 1 2.9172 -1.1206 -1.0288 41 1 1.0870 0.6165 -2.5525 42 1 2.7588 1.0462 -2.1182 43 1 2.5033 1.0618 -4.8013 44 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714248576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:09 Heat of formation + Delta-G solvation = -80.073457 kcal Electronic energy + Delta-G solvation = -27723.606840 eV Core-core repulsion = 23397.483166 eV Total energy + Delta-G solvation = -4326.123674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.32290 -40.76451 -39.56676 -38.42913 -36.97910 -34.15656 -33.75171 -33.11292 -32.84194 -31.35663 -30.87396 -28.65820 -26.67945 -25.83428 -24.33098 -23.98069 -22.84818 -20.71849 -20.55159 -19.35332 -18.07862 -17.96308 -17.78302 -17.27499 -16.84144 -16.28604 -16.09870 -15.90904 -15.49576 -15.32387 -15.03041 -14.53098 -14.41093 -14.25127 -14.10357 -13.92116 -13.48338 -13.40462 -13.25379 -12.88914 -12.81388 -12.57011 -12.46570 -12.11449 -11.92650 -11.75933 -11.67617 -11.44642 -11.09347 -10.88168 -10.47980 -10.30947 -10.25742 -10.08999 -9.84872 -9.54729 -9.23016 -9.16624 -8.52289 -8.17057 -8.01214 -6.46213 -3.87310 0.50370 0.74509 2.53392 2.89189 3.16543 3.22932 3.26931 3.33575 3.60351 3.84726 3.88326 4.00912 4.18956 4.24550 4.35419 4.45336 4.60181 4.70649 4.92254 4.95014 5.00628 5.15134 5.15979 5.21024 5.27558 5.35071 5.46617 5.52905 5.55665 5.65623 5.74107 5.75193 5.92472 5.96664 6.15920 6.21519 6.22947 6.34950 7.11432 7.28479 7.50565 7.51729 7.53968 8.01066 8.08626 8.55973 9.12990 9.49010 10.00135 10.71223 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.001939 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.699978 B =14434.478595 C =15990.227565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.120 3.880 5 N -0.733 5.733 6 C 0.522 3.478 7 O -0.523 6.523 8 C -0.095 4.095 9 C 0.135 3.865 10 C -0.135 4.135 11 C -0.108 4.108 12 C 0.042 3.958 13 F -0.132 7.132 14 C 0.081 3.919 15 N -0.430 5.430 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -1.802 21.259 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.003 4.003 5 N -0.386 5.386 6 C 0.307 3.693 7 O -0.398 6.398 8 C -0.135 4.135 9 C -0.003 4.003 10 C -0.155 4.155 11 C -0.135 4.135 12 C 0.020 3.980 13 F -0.111 7.111 14 C -0.078 4.078 15 N -0.138 5.138 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.234 0.766 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.168 0.832 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.784 -2.316 21.768 22.408 hybrid contribution 1.740 0.069 -0.936 1.977 sum 6.524 -2.247 20.832 21.945 Atomic orbital electron populations 1.21737 0.93414 1.02962 1.01553 1.21811 0.97133 0.95933 0.89000 0.93313 1.21584 0.79192 1.01978 0.97588 1.46011 1.08181 1.60619 1.23837 1.20148 0.89129 0.77811 0.82201 1.90742 1.69907 1.46638 1.32556 1.20635 0.93564 1.03498 0.95832 1.20635 0.93987 0.93082 0.92643 1.21921 0.98213 0.95542 0.99794 1.21632 1.00162 1.00821 0.90880 1.18863 1.00521 0.95725 0.82850 1.91523 1.88331 1.82749 1.48471 1.22890 0.94582 0.91938 0.98417 1.67501 1.17929 1.30734 0.97600 1.60118 1.34782 1.32296 1.02721 1.21757 1.01525 0.93780 0.91277 1.19790 0.85115 0.88211 0.84463 1.90527 1.55396 1.16087 1.84762 1.41862 1.57624 1.12430 1.07950 1.19649 1.40128 0.96431 0.86813 0.87962 1.25267 0.97601 0.95786 0.99252 1.69604 1.48453 1.08857 1.27296 0.85915 0.79408 0.78859 0.80019 1.19862 1.20974 1.19913 0.91989 0.91528 0.92482 0.90828 0.90400 0.76579 0.86547 0.86593 0.83405 0.83387 0.81633 0.83184 0.89410 0.93832 0.77454 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.41 37.16 0.35 -1.12 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.32 5.31 -4.04 -0.02 1.30 16 5 N -0.73 -7.50 4.99 -60.29 -0.30 -7.80 16 6 C 0.52 6.02 7.76 -10.98 -0.09 5.94 16 7 O -0.52 -8.14 15.34 5.55 0.09 -8.05 16 8 C -0.09 -0.77 6.10 -29.03 -0.18 -0.95 16 9 C 0.13 1.33 5.76 -82.59 -0.48 0.86 16 10 C -0.13 -1.05 9.71 -39.45 -0.38 -1.44 16 11 C -0.11 -0.84 10.16 -39.21 -0.40 -1.24 16 12 C 0.04 0.38 7.34 -39.28 -0.29 0.09 16 13 F -0.13 -1.23 17.28 2.25 0.04 -1.19 16 14 C 0.08 0.80 11.17 -17.47 -0.20 0.60 16 15 N -0.43 -4.98 9.24 -9.42 -0.09 -5.06 16 16 N -0.66 -9.76 5.92 -107.99 -0.64 -10.40 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.44 9.84 7.82 -10.98 -0.09 9.76 16 19 O -0.58 -15.19 15.78 5.55 0.09 -15.10 16 20 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 22 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 25 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.40 3.47 7.37 -40.82 -0.30 3.17 16 35 H 0.12 0.66 7.87 -51.93 -0.41 0.25 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.15 0.75 7.95 -52.49 -0.42 0.33 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.35 5.14 6.41 -39.29 -0.25 4.89 16 41 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 42 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -34.51 382.81 -7.39 -41.90 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.77 Total: 13.92 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.22 Total: 7.39 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.36 Total: -60.17 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.15 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.51 -7.39 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714248576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.169 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds