Wall clock time and date at job start Tue Mar 31 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00324 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.47266 * 179.97438 * 8 6 5 10 10 C 1.38237 * 119.58856 * 124.99792 * 9 8 6 11 11 C 1.38594 * 119.18791 * 180.02562 * 10 9 8 12 12 C 1.38882 * 118.39915 * 0.02562 * 11 10 9 13 13 F 1.35102 * 120.44084 * 179.97438 * 12 11 10 14 14 C 1.38415 * 119.11522 * 359.97438 * 12 11 10 15 15 N 1.31849 * 119.59120 * 304.72932 * 9 8 6 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47257 * 59.99848 * 25 23 21 27 27 H 1.48495 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46784 * 300.00182 * 25 23 21 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 35 35 H 1.08994 * 109.47278 * 300.00141 * 8 6 5 36 36 H 1.09001 * 109.46716 * 60.00198 * 8 6 5 37 37 H 1.07994 * 120.40338 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.79665 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.64224 * 179.97438 * 14 12 11 40 40 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 44 44 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8828 3.1402 8 6 5.6749 -1.5372 2.1304 9 6 6.1773 -2.2466 3.3614 10 6 6.9711 -3.3701 3.2256 11 6 7.4281 -4.0163 4.3633 12 6 7.0670 -3.5054 5.6032 13 9 7.4891 -4.1029 6.7390 14 6 6.2690 -2.3758 5.6597 15 7 5.8587 -1.7847 4.5545 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 3.0350 -1.9399 -8.8555 27 1 4.0193 0.1074 -9.7049 28 1 5.3129 -1.3534 -8.2655 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 3.9823 -0.4629 0.4315 35 1 5.9629 -2.1007 1.2429 36 1 6.1098 -0.5388 2.0838 37 1 7.2311 -3.7403 2.2450 38 1 8.0501 -4.8959 4.2874 39 1 5.9828 -1.9715 6.6194 40 1 2.9172 -1.1206 -1.0288 41 1 1.0870 0.6165 -2.5525 42 1 2.7588 1.0462 -2.1182 43 1 2.5033 1.0618 -4.8013 44 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714248576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:09 Heat of formation + Delta-G solvation = -106.607112 kcal Electronic energy + Delta-G solvation = -27724.757426 eV Core-core repulsion = 23397.483166 eV Total energy + Delta-G solvation = -4327.274260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.01766 -41.48927 -40.49091 -40.03311 -38.14700 -35.94736 -34.91010 -33.82148 -33.48778 -33.24035 -32.02187 -29.37691 -28.10727 -26.88563 -25.61897 -24.96283 -23.55506 -21.65201 -21.42928 -21.06751 -19.89247 -18.76768 -18.54073 -18.18010 -17.68927 -17.48402 -16.95194 -16.82366 -16.73763 -16.38896 -16.32656 -16.03708 -15.56589 -15.28725 -15.00912 -14.91940 -14.78290 -14.29732 -14.03489 -14.01273 -13.73474 -13.65420 -13.46104 -13.26499 -13.14430 -12.93382 -12.85764 -12.74382 -12.54240 -12.39801 -12.11063 -11.85637 -11.47184 -11.01666 -10.92375 -10.55453 -10.30898 -10.11826 -9.98585 -9.86050 -9.33961 -8.44044 -5.92352 -0.16265 0.11858 1.41711 1.44249 1.54448 1.67561 2.08105 2.11320 2.30913 2.64125 2.90447 2.95733 3.23772 3.24420 3.52067 3.59971 3.72970 3.76948 3.84143 3.96746 4.19505 4.29182 4.31300 4.42169 4.46548 4.49197 4.60861 4.63574 4.66141 4.74490 4.86467 4.86798 4.94379 4.95780 5.06795 5.33716 5.43629 5.48185 5.58824 5.90909 6.11717 6.40886 6.47892 6.63024 6.84638 7.15598 7.24599 7.59876 8.14906 8.72800 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.001939 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.699978 B =14434.478595 C =15990.227565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.070 0.930 4 C 0.126 3.874 5 N -0.725 5.725 6 C 0.518 3.482 7 O -0.570 6.570 8 C -0.091 4.091 9 C 0.115 3.885 10 C -0.132 4.132 11 C -0.107 4.107 12 C 0.032 3.968 13 F -0.136 7.136 14 C 0.065 3.935 15 N -0.463 5.463 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.409 0.591 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.345 0.655 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -1.291 20.773 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.087 0.913 4 C 0.002 3.998 5 N -0.379 5.379 6 C 0.305 3.695 7 O -0.448 6.448 8 C -0.130 4.130 9 C -0.023 4.023 10 C -0.151 4.151 11 C -0.133 4.133 12 C 0.010 3.990 13 F -0.115 7.115 14 C -0.094 4.094 15 N -0.171 5.171 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.196 0.804 38 H 0.192 0.808 39 H 0.192 0.808 40 H 0.166 0.834 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.230 0.770 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.568 -1.768 21.279 22.066 hybrid contribution 1.464 -0.112 -0.723 1.637 sum 7.032 -1.880 20.555 21.806 Atomic orbital electron populations 1.21754 0.92950 1.02419 1.02538 1.21828 0.97357 0.96483 0.87310 0.91261 1.21469 0.79677 1.00963 0.97730 1.45969 1.07927 1.60098 1.23884 1.20757 0.90521 0.76786 0.81457 1.90723 1.71104 1.48651 1.34331 1.20747 0.90861 1.05113 0.96316 1.21036 0.94579 0.94070 0.92641 1.22259 0.97127 0.94519 1.01195 1.21988 0.99797 1.01325 0.90206 1.18981 1.00808 0.95816 0.83361 1.91509 1.88389 1.82764 1.48802 1.23090 0.95074 0.92546 0.98666 1.67475 1.19050 1.32015 0.98563 1.60102 1.34937 1.32895 1.03621 1.21613 1.02544 0.93726 0.88925 1.20875 0.83180 0.87975 0.85422 1.90499 1.56633 1.18153 1.85615 1.41929 1.58270 1.12594 1.08198 1.19611 1.42045 0.95948 0.88569 0.90274 1.26004 0.97336 0.96608 1.01325 1.69664 1.48610 1.09646 1.28113 0.85020 0.78780 0.77784 0.76960 1.19963 1.19721 1.19522 0.92242 0.92880 0.90248 0.90275 0.92356 0.75451 0.83705 0.84568 0.80383 0.80809 0.80759 0.83406 0.87960 0.90782 0.76958 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.41 71.98 0.68 -1.99 16 2 C 0.08 1.60 2.81 44.91 0.13 1.73 16 3 H 0.07 1.17 7.80 -2.39 -0.02 1.16 16 4 C 0.13 2.61 5.31 86.38 0.46 3.07 16 5 N -0.73 -13.82 4.99 -463.05 -2.31 -16.13 16 6 C 0.52 11.50 7.76 87.66 0.68 12.18 16 7 O -0.57 -17.85 15.34 -3.05 -0.05 -17.90 16 8 C -0.09 -1.31 6.10 29.10 0.18 -1.14 16 9 C 0.11 2.15 5.76 42.56 0.24 2.39 16 10 C -0.13 -1.80 9.71 22.35 0.22 -1.58 16 11 C -0.11 -1.49 10.16 22.51 0.23 -1.26 16 12 C 0.03 0.57 7.34 22.47 0.17 0.73 16 13 F -0.14 -2.49 17.28 44.97 0.78 -1.71 16 14 C 0.07 1.30 11.17 84.73 0.95 2.25 16 15 N -0.46 -10.74 9.24 -183.71 -1.70 -12.43 16 16 N -0.68 -18.84 5.92 -495.58 -2.94 -21.78 16 17 C 0.06 1.94 5.97 85.56 0.51 2.45 16 18 C 0.44 19.43 7.82 87.66 0.69 20.11 16 19 O -0.62 -32.60 15.78 -3.05 -0.05 -32.65 16 20 N -0.57 -27.85 5.29 -306.99 -1.62 -29.48 16 21 C -0.33 -18.16 9.68 84.04 0.81 -17.34 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 24 N -0.92 -48.09 13.05 21.66 0.28 -47.81 16 25 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 H 0.06 1.18 7.45 -2.39 -0.02 1.17 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 6.25 7.37 -92.71 -0.68 5.56 16 35 H 0.15 1.22 7.87 -2.39 -0.02 1.20 16 36 H 0.14 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.18 1.23 7.95 -2.91 -0.02 1.20 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.35 9.73 6.41 -89.69 -0.58 9.15 16 41 H 0.10 2.86 7.44 -2.39 -0.02 2.85 16 42 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 43 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 44 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -76.09 382.81 -0.10 -76.19 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.92 Total: 38.62 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.40 Total: 21.40 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -8.28 Total: -127.62 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.10 Total: -50.55 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.71 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -76.09 -0.10 -76.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714248576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.419 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds