Wall clock time and date at job start Tue Mar 31 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47069 * 2 1 4 4 C 1.52996 * 109.47001 * 239.99648 * 2 1 3 5 5 N 1.46504 * 109.47244 * 185.00350 * 4 2 1 6 6 C 1.34772 * 120.00086 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00122 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.46820 * 179.97438 * 8 6 5 10 10 C 1.38236 * 119.58354 * 124.99774 * 9 8 6 11 11 C 1.38591 * 119.18462 * 179.97438 * 10 9 8 12 12 C 1.38882 * 118.40372 * 0.02562 * 11 10 9 13 13 F 1.35096 * 120.44638 * 179.97438 * 12 11 10 14 14 C 1.38422 * 119.10810 * 0.02562 * 12 11 10 15 15 N 1.31845 * 119.59295 * 304.72695 * 9 8 6 16 16 N 1.46901 * 109.46901 * 119.99890 * 2 1 3 17 17 C 1.46900 * 111.00235 * 275.00072 * 16 2 1 18 18 C 1.50695 * 109.47099 * 179.97438 * 17 16 2 19 19 O 1.21296 * 120.00362 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99855 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99910 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00375 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99802 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47199 * 89.99872 * 25 23 21 27 27 H 1.48496 * 109.47077 * 209.99916 * 25 23 21 28 28 H 1.48499 * 109.47400 * 329.99942 * 25 23 21 29 29 H 1.08996 * 109.47502 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47001 * 300.00216 * 1 2 3 31 31 H 1.09003 * 109.46590 * 59.99781 * 1 2 3 32 32 H 1.08999 * 109.46987 * 65.00366 * 4 2 1 33 33 H 1.09002 * 109.47621 * 305.00742 * 4 2 1 34 34 H 0.96997 * 119.99399 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.47353 * 59.99471 * 8 6 5 36 36 H 1.09000 * 109.47019 * 299.99125 * 8 6 5 37 37 H 1.07990 * 120.41190 * 359.97438 * 10 9 8 38 38 H 1.08003 * 120.79863 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.63391 * 180.02562 * 14 12 11 40 40 H 1.00905 * 110.99856 * 151.04123 * 16 2 1 41 41 H 1.09000 * 109.46448 * 299.99918 * 17 16 2 42 42 H 1.09001 * 109.47056 * 59.99601 * 17 16 2 43 43 H 0.96998 * 120.00193 * 0.02562 * 20 18 17 44 44 H 0.96993 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1911 7 8 3.5699 -1.8835 -3.1398 8 6 5.6749 -1.5372 -2.1304 9 6 6.1772 -2.2476 -3.3609 10 6 7.1336 -1.6432 -4.1552 11 6 7.5901 -2.3042 -5.2846 12 6 7.0639 -3.5562 -5.5753 13 9 7.4789 -4.2368 -6.6660 14 6 6.1078 -4.0969 -4.7329 15 7 5.7030 -3.4400 -3.6635 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5872 -0.5219 3.5560 19 8 2.8676 -1.6988 3.4703 20 7 2.7281 0.1204 4.7325 21 6 3.1878 -0.5567 5.8324 22 1 3.4367 -1.6048 5.7562 23 6 3.3326 0.1054 7.0455 24 7 3.0293 1.3806 7.1383 25 14 3.9583 -0.8174 8.5442 26 1 5.4394 -0.7243 8.6002 27 1 3.3779 -0.2178 9.7726 28 1 3.5552 -2.2436 8.4515 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7517 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2952 34 1 3.9824 -0.4623 -0.4319 35 1 5.9629 -2.1007 -1.2429 36 1 6.1099 -0.5388 -2.0839 37 1 7.5204 -0.6681 -3.8990 38 1 8.3370 -1.8564 -5.9234 39 1 5.6932 -5.0701 -4.9506 40 1 2.9173 -1.1206 1.0287 41 1 2.7589 1.0461 2.1182 42 1 1.0870 0.6164 2.5525 43 1 2.5042 1.0617 4.8011 44 1 3.1306 1.8429 7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714248577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:12 Heat of formation + Delta-G solvation = -79.662554 kcal Electronic energy + Delta-G solvation = -27722.563600 eV Core-core repulsion = 23396.457743 eV Total energy + Delta-G solvation = -4326.105856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.32447 -40.76729 -39.56811 -38.42112 -36.97533 -34.15085 -33.74682 -33.11432 -32.84950 -31.34793 -30.86932 -28.65962 -26.67423 -25.83321 -24.33772 -23.97301 -22.85043 -20.71798 -20.55147 -19.34422 -18.08308 -17.95987 -17.78452 -17.27417 -16.84327 -16.22833 -16.11177 -15.91845 -15.55406 -15.37968 -14.91324 -14.51633 -14.43448 -14.22951 -14.16178 -13.88432 -13.51380 -13.40531 -13.24085 -12.87396 -12.80746 -12.58022 -12.48257 -12.09973 -11.92009 -11.75629 -11.67320 -11.44159 -11.10384 -10.88190 -10.42050 -10.32008 -10.25131 -10.08654 -9.83157 -9.54635 -9.23021 -9.16827 -8.51115 -8.15990 -8.00169 -6.45458 -3.86309 0.50198 0.74034 2.52760 2.89455 3.15120 3.24386 3.30396 3.34136 3.60176 3.85696 3.88814 4.01381 4.16836 4.25444 4.35035 4.44243 4.59497 4.70368 4.92763 4.94749 4.97778 5.14923 5.16405 5.21676 5.27354 5.36416 5.44741 5.51479 5.53556 5.65720 5.75051 5.75101 5.92826 5.97071 6.16325 6.21341 6.23473 6.35184 7.12425 7.28367 7.51857 7.53727 7.54951 8.02369 8.08484 8.57023 9.14187 9.50041 10.01271 10.72135 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.001929 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.474750 B =14511.008725 C =15872.778259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.048 0.952 4 C 0.120 3.880 5 N -0.733 5.733 6 C 0.522 3.478 7 O -0.523 6.523 8 C -0.095 4.095 9 C 0.136 3.864 10 C -0.137 4.137 11 C -0.109 4.109 12 C 0.042 3.958 13 F -0.132 7.132 14 C 0.083 3.917 15 N -0.427 5.427 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.348 0.652 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 0.700 -22.687 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 H 0.066 0.934 4 C -0.004 4.004 5 N -0.387 5.387 6 C 0.307 3.693 7 O -0.398 6.398 8 C -0.136 4.136 9 C -0.003 4.003 10 C -0.157 4.157 11 C -0.136 4.136 12 C 0.020 3.980 13 F -0.111 7.111 14 C -0.076 4.076 15 N -0.135 5.135 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.169 0.831 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.863 -0.955 -22.590 23.127 hybrid contribution 1.872 1.264 0.310 2.280 sum 6.735 0.310 -22.280 23.278 Atomic orbital electron populations 1.21739 0.93423 1.02996 1.01519 1.21807 0.97136 0.95866 0.89035 0.93371 1.21586 0.79211 1.02062 0.97501 1.46014 1.08181 1.60591 1.23867 1.20145 0.89145 0.77587 0.82410 1.90740 1.69925 1.46058 1.33113 1.20638 0.93583 1.02202 0.97145 1.20644 0.92936 0.91131 0.95564 1.21872 0.97972 1.01395 0.94475 1.21609 1.00417 0.93408 0.98135 1.18870 0.99267 0.92790 0.87070 1.91521 1.89062 1.79135 1.51344 1.22930 0.93830 1.00624 0.90233 1.67525 1.22436 1.07618 1.15912 1.60110 1.34861 1.32264 1.02696 1.21755 1.01501 0.93763 0.91292 1.19798 0.85099 0.88223 0.84469 1.90537 1.55290 1.16072 1.84738 1.41865 1.57675 1.12417 1.07978 1.19703 1.39959 0.96447 0.86798 0.87901 1.25269 0.97630 0.95798 0.99253 1.69607 1.48547 1.08858 1.27247 0.85854 0.78745 0.79551 0.80132 1.20420 1.20920 1.19384 0.91491 0.91984 0.92524 0.90939 0.90284 0.76582 0.86201 0.86917 0.83604 0.83463 0.81551 0.83113 0.93862 0.89416 0.77473 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.41 37.16 0.35 -1.12 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.08 16 4 C 0.12 1.32 5.31 -4.04 -0.02 1.29 16 5 N -0.73 -7.49 4.99 -60.29 -0.30 -7.79 16 6 C 0.52 6.01 7.76 -10.99 -0.09 5.93 16 7 O -0.52 -8.12 15.34 5.55 0.09 -8.03 16 8 C -0.10 -0.78 6.10 -29.03 -0.18 -0.95 16 9 C 0.14 1.34 5.76 -82.58 -0.48 0.86 16 10 C -0.14 -1.00 9.71 -39.45 -0.38 -1.38 16 11 C -0.11 -0.81 10.16 -39.21 -0.40 -1.21 16 12 C 0.04 0.38 7.35 -39.28 -0.29 0.09 16 13 F -0.13 -1.22 17.28 2.25 0.04 -1.19 16 14 C 0.08 0.85 11.17 -17.47 -0.20 0.65 16 15 N -0.43 -5.16 9.23 -9.42 -0.09 -5.25 16 16 N -0.66 -9.87 5.92 -107.99 -0.64 -10.51 16 17 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 18 C 0.44 9.92 7.82 -10.99 -0.09 9.84 16 19 O -0.58 -15.34 15.78 5.54 0.09 -15.25 16 20 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 25 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 3.46 7.37 -40.82 -0.30 3.16 16 35 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.15 0.59 7.95 -52.49 -0.42 0.18 16 38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.35 5.26 6.41 -39.29 -0.25 5.01 16 41 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 42 H 0.09 1.34 7.44 -51.93 -0.39 0.96 16 43 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -34.93 382.81 -7.39 -42.32 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.77 Total: 13.80 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.22 Total: 7.56 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.36 Total: -60.64 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.93 -7.39 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714248577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.343 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds