Wall clock time and date at job start Tue Mar 31 2020 20:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47069 * 2 1 4 4 C 1.52996 * 109.47001 * 239.99648 * 2 1 3 5 5 N 1.46504 * 109.47244 * 185.00350 * 4 2 1 6 6 C 1.34772 * 120.00086 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00122 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.46820 * 179.97438 * 8 6 5 10 10 C 1.38236 * 119.58354 * 124.99774 * 9 8 6 11 11 C 1.38591 * 119.18462 * 179.97438 * 10 9 8 12 12 C 1.38882 * 118.40372 * 0.02562 * 11 10 9 13 13 F 1.35096 * 120.44638 * 179.97438 * 12 11 10 14 14 C 1.38422 * 119.10810 * 0.02562 * 12 11 10 15 15 N 1.31845 * 119.59295 * 304.72695 * 9 8 6 16 16 N 1.46901 * 109.46901 * 119.99890 * 2 1 3 17 17 C 1.46900 * 111.00235 * 275.00072 * 16 2 1 18 18 C 1.50695 * 109.47099 * 179.97438 * 17 16 2 19 19 O 1.21296 * 120.00362 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99855 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99910 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00375 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99802 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47199 * 89.99872 * 25 23 21 27 27 H 1.48496 * 109.47077 * 209.99916 * 25 23 21 28 28 H 1.48499 * 109.47400 * 329.99942 * 25 23 21 29 29 H 1.08996 * 109.47502 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47001 * 300.00216 * 1 2 3 31 31 H 1.09003 * 109.46590 * 59.99781 * 1 2 3 32 32 H 1.08999 * 109.46987 * 65.00366 * 4 2 1 33 33 H 1.09002 * 109.47621 * 305.00742 * 4 2 1 34 34 H 0.96997 * 119.99399 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.47353 * 59.99471 * 8 6 5 36 36 H 1.09000 * 109.47019 * 299.99125 * 8 6 5 37 37 H 1.07990 * 120.41190 * 359.97438 * 10 9 8 38 38 H 1.08003 * 120.79863 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.63391 * 180.02562 * 14 12 11 40 40 H 1.00905 * 110.99856 * 151.04123 * 16 2 1 41 41 H 1.09000 * 109.46448 * 299.99918 * 17 16 2 42 42 H 1.09001 * 109.47056 * 59.99601 * 17 16 2 43 43 H 0.96998 * 120.00193 * 0.02562 * 20 18 17 44 44 H 0.96993 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1911 7 8 3.5699 -1.8835 -3.1398 8 6 5.6749 -1.5372 -2.1304 9 6 6.1772 -2.2476 -3.3609 10 6 7.1336 -1.6432 -4.1552 11 6 7.5901 -2.3042 -5.2846 12 6 7.0639 -3.5562 -5.5753 13 9 7.4789 -4.2368 -6.6660 14 6 6.1078 -4.0969 -4.7329 15 7 5.7030 -3.4400 -3.6635 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5872 -0.5219 3.5560 19 8 2.8676 -1.6988 3.4703 20 7 2.7281 0.1204 4.7325 21 6 3.1878 -0.5567 5.8324 22 1 3.4367 -1.6048 5.7562 23 6 3.3326 0.1054 7.0455 24 7 3.0293 1.3806 7.1383 25 14 3.9583 -0.8174 8.5442 26 1 5.4394 -0.7243 8.6002 27 1 3.3779 -0.2178 9.7726 28 1 3.5552 -2.2436 8.4515 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.7517 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2952 34 1 3.9824 -0.4623 -0.4319 35 1 5.9629 -2.1007 -1.2429 36 1 6.1099 -0.5388 -2.0839 37 1 7.5204 -0.6681 -3.8990 38 1 8.3370 -1.8564 -5.9234 39 1 5.6932 -5.0701 -4.9506 40 1 2.9173 -1.1206 1.0287 41 1 2.7589 1.0461 2.1182 42 1 1.0870 0.6164 2.5525 43 1 2.5042 1.0617 4.8011 44 1 3.1306 1.8429 7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714248577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:11 Heat of formation + Delta-G solvation = -106.875294 kcal Electronic energy + Delta-G solvation = -27723.743632 eV Core-core repulsion = 23396.457743 eV Total energy + Delta-G solvation = -4327.285889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.01724 -41.48664 -40.49099 -40.03776 -38.14697 -35.95608 -34.91027 -33.81776 -33.48431 -33.24806 -32.02221 -29.37400 -28.11240 -26.88599 -25.62381 -24.95906 -23.55022 -21.64944 -21.42642 -21.07385 -19.90133 -18.76530 -18.54164 -18.18526 -17.67551 -17.47318 -16.91012 -16.87072 -16.74835 -16.43962 -16.33522 -15.99265 -15.57327 -15.25794 -14.99010 -14.89119 -14.84376 -14.30076 -14.05195 -13.98981 -13.71316 -13.66245 -13.47155 -13.27043 -13.17867 -12.90469 -12.84974 -12.75695 -12.54708 -12.38953 -12.11675 -11.85467 -11.48550 -11.01228 -10.91611 -10.52925 -10.31764 -10.11534 -9.99059 -9.85922 -9.33491 -8.44990 -5.93067 -0.15551 0.13343 1.39076 1.43563 1.55647 1.67189 2.07611 2.12194 2.30404 2.65229 2.90304 2.96185 3.22801 3.26076 3.51277 3.60565 3.73174 3.77297 3.85356 3.96692 4.19799 4.28569 4.32704 4.42210 4.45762 4.49045 4.62226 4.63403 4.66189 4.75319 4.86979 4.87312 4.94299 4.95389 5.07113 5.34040 5.43250 5.48472 5.59857 5.91003 6.12020 6.39906 6.48262 6.62538 6.87386 7.15203 7.25049 7.59233 8.14730 8.72147 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.001929 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.474750 B =14511.008725 C =15872.778259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.073 0.927 4 C 0.125 3.875 5 N -0.725 5.725 6 C 0.517 3.483 7 O -0.570 6.570 8 C -0.091 4.091 9 C 0.113 3.887 10 C -0.127 4.127 11 C -0.106 4.106 12 C 0.032 3.968 13 F -0.136 7.136 14 C 0.062 3.938 15 N -0.469 5.469 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.344 0.656 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 2.990 -22.941 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.090 0.910 4 C 0.001 3.999 5 N -0.379 5.379 6 C 0.304 3.696 7 O -0.448 6.448 8 C -0.131 4.131 9 C -0.025 4.025 10 C -0.146 4.146 11 C -0.132 4.132 12 C 0.010 3.990 13 F -0.115 7.115 14 C -0.097 4.097 15 N -0.177 5.177 16 N -0.318 5.318 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.245 0.755 35 H 0.144 0.856 36 H 0.173 0.827 37 H 0.203 0.797 38 H 0.195 0.805 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.965 1.372 -22.837 23.643 hybrid contribution 1.499 0.542 0.331 1.628 sum 7.464 1.914 -22.506 23.789 Atomic orbital electron populations 1.21759 0.92996 1.02337 1.02594 1.21836 0.97325 0.96554 0.87224 0.90957 1.21474 0.79693 1.00843 0.97856 1.45972 1.07916 1.60097 1.23894 1.20771 0.90585 0.76518 0.81689 1.90721 1.71131 1.48008 1.34968 1.20766 0.91001 1.04482 0.96819 1.21082 0.93832 0.90908 0.96677 1.22268 0.96485 1.02490 0.93340 1.22010 1.00339 0.92435 0.98400 1.18990 0.99424 0.93662 0.86898 1.91506 1.89081 1.79421 1.51493 1.23048 0.94785 1.01178 0.90656 1.67471 1.23923 1.09259 1.17039 1.60091 1.34949 1.33004 1.03752 1.21611 1.02586 0.93696 0.88823 1.20918 0.83169 0.87969 0.85488 1.90510 1.56642 1.18270 1.85628 1.41921 1.58261 1.12589 1.08186 1.19634 1.42010 0.95887 0.88618 0.90436 1.25993 0.97330 0.96625 1.01272 1.69660 1.48585 1.09588 1.28129 0.84964 0.78561 0.77960 0.77089 1.19501 1.19716 1.20045 0.93077 0.92216 0.90115 0.89927 0.92759 0.75450 0.85589 0.82658 0.79671 0.80479 0.81261 0.83495 0.90608 0.87893 0.76905 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.41 71.98 0.68 -2.00 16 2 C 0.08 1.61 2.81 44.91 0.13 1.73 16 3 H 0.07 1.17 7.80 -2.39 -0.02 1.16 16 4 C 0.13 2.61 5.31 86.38 0.46 3.07 16 5 N -0.73 -13.83 4.99 -463.06 -2.31 -16.14 16 6 C 0.52 11.51 7.76 87.66 0.68 12.19 16 7 O -0.57 -17.93 15.34 -3.04 -0.05 -17.98 16 8 C -0.09 -1.31 6.10 29.10 0.18 -1.14 16 9 C 0.11 2.11 5.76 42.56 0.24 2.36 16 10 C -0.13 -1.50 9.71 22.35 0.22 -1.29 16 11 C -0.11 -1.34 10.16 22.51 0.23 -1.11 16 12 C 0.03 0.57 7.35 22.47 0.17 0.73 16 13 F -0.14 -2.51 17.28 44.97 0.78 -1.73 16 14 C 0.06 1.32 11.17 84.73 0.95 2.27 16 15 N -0.47 -11.62 9.23 -183.70 -1.70 -13.32 16 16 N -0.68 -19.32 5.92 -495.59 -2.94 -22.26 16 17 C 0.06 1.99 5.97 85.56 0.51 2.50 16 18 C 0.44 19.67 7.82 87.66 0.69 20.35 16 19 O -0.62 -33.42 15.78 -3.08 -0.05 -33.47 16 20 N -0.57 -28.08 5.29 -306.98 -1.62 -29.70 16 21 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.19 13.05 21.67 0.28 -47.90 16 25 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 6.24 7.37 -92.71 -0.68 5.56 16 35 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.16 0.82 7.87 -2.39 -0.02 0.80 16 37 H 0.19 0.63 7.95 -2.92 -0.02 0.60 16 38 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 40 H 0.34 10.08 6.41 -89.69 -0.58 9.51 16 41 H 0.08 1.87 8.06 -2.39 -0.02 1.85 16 42 H 0.10 2.89 7.44 -2.39 -0.02 2.87 16 43 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 44 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -78.53 382.81 -0.09 -78.63 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.92 Total: 37.81 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 6.40 Total: 21.96 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -8.28 Total: -129.32 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.10 Total: -51.45 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -78.53 -0.09 -78.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714248577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.249 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds